data_8Q1W # _model_server_result.job_id GuzY2kLyZ31I50vWboyU9Q _model_server_result.datetime_utc '2024-10-10 09:29:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8q1w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":102}' # _entry.id 8Q1W # _exptl.entry_id 8Q1W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90.48 _cell.angle_beta 90.591 _cell.angle_gamma 94.481 _cell.entry_id 8Q1W _cell.length_a 38.548 _cell.length_b 38.659 _cell.length_c 44.049 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8Q1W _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 64 A CYS 64 1_555 A SG CYS 68 A CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? disulf ? disulf2 B SG CYS 64 B CYS 64 1_555 B SG CYS 68 B CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? disulf ? disulf3 C SG CYS 64 C CYS 64 1_555 C SG CYS 68 C CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? covale ? covale1 A SG CYS 20 A CYS 20 1_555 D CBB HEC . A HEC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.674 ? covale ? covale2 B SG CYS 20 B CYS 20 1_555 G CBB HEC . B HEC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.665 ? covale ? covale3 C SG CYS 20 C CYS 20 1_555 I CBB HEC . C HEC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.713 ? metalc ? metalc1 A NE2 HIS 24 A HIS 24 1_555 D FE HEC . A HEC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc2 A O ILE 52 A ILE 52 1_555 F NA NA . A NA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc3 A O ALA 53 A ALA 53 1_555 F NA NA . A NA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc4 A SD MET 56 A MET 56 1_555 D FE HEC . A HEC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc5 A O MET 56 A MET 56 1_555 F NA NA . A NA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc6 A O PRO 61 A PRO 61 1_555 F NA NA . A NA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc7 A O CYS 64 A CYS 64 1_555 F NA NA . A NA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc8 B NE2 HIS 24 B HIS 24 1_555 G FE HEC . B HEC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc9 B O ILE 52 B ILE 52 1_555 H NA NA . B NA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc10 B O ALA 53 B ALA 53 1_555 H NA NA . B NA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc11 B SD MET 56 B MET 56 1_555 G FE HEC . B HEC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc12 B O MET 56 B MET 56 1_555 H NA NA . B NA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc13 B O PRO 61 B PRO 61 1_555 H NA NA . B NA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc14 B O CYS 64 B CYS 64 1_555 H NA NA . B NA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc15 C NE2 HIS 24 C HIS 24 1_555 I FE HEC . C HEC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc16 C O ILE 52 C ILE 52 1_555 K NA NA . C NA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc17 C O ALA 53 C ALA 53 1_555 K NA NA . C NA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc18 C SD MET 56 C MET 56 1_555 I FE HEC . C HEC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc19 C O MET 56 C MET 56 1_555 K NA NA . C NA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc20 C O PRO 61 C PRO 61 1_555 K NA NA . C NA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc21 C O CYS 64 C CYS 64 1_555 K NA NA . C NA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8Q1W _atom_sites.fract_transf_matrix[1][1] 0.025942 _atom_sites.fract_transf_matrix[1][2] 0.002033 _atom_sites.fract_transf_matrix[1][3] 0.000286 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025947 _atom_sites.fract_transf_matrix[2][3] 0.000239 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022704 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 HEC A 1 101 101 HEC HEC . E 3 CL A 1 102 102 CL CL . F 4 NA A 1 103 103 NA NA . G 2 HEC B 1 101 101 HEC HEC . H 4 NA B 1 102 102 NA NA . I 2 HEC C 1 101 101 HEC HEC . J 3 CL C 1 102 102 CL CL . K 4 NA C 1 103 103 NA NA . L 5 HOH A 1 201 201 HOH HOH . L 5 HOH A 2 202 202 HOH HOH . L 5 HOH A 3 203 204 HOH HOH . L 5 HOH A 4 204 205 HOH HOH . L 5 HOH A 5 205 203 HOH HOH . L 5 HOH A 6 206 206 HOH HOH . L 5 HOH A 7 207 207 HOH HOH . L 5 HOH A 8 208 211 HOH HOH . L 5 HOH A 9 209 210 HOH HOH . L 5 HOH A 10 210 209 HOH HOH . L 5 HOH A 11 211 208 HOH HOH . L 5 HOH A 12 212 212 HOH HOH . L 5 HOH A 13 213 213 HOH HOH . L 5 HOH A 14 214 223 HOH HOH . L 5 HOH A 15 215 215 HOH HOH . L 5 HOH A 16 216 214 HOH HOH . L 5 HOH A 17 217 218 HOH HOH . L 5 HOH A 18 218 216 HOH HOH . L 5 HOH A 19 219 217 HOH HOH . L 5 HOH A 20 220 220 HOH HOH . L 5 HOH A 21 221 221 HOH HOH . L 5 HOH A 22 222 222 HOH HOH . L 5 HOH A 23 223 225 HOH HOH . L 5 HOH A 24 224 226 HOH HOH . L 5 HOH A 25 225 219 HOH HOH . L 5 HOH A 26 226 224 HOH HOH . L 5 HOH A 27 227 228 HOH HOH . L 5 HOH A 28 228 229 HOH HOH . L 5 HOH A 29 229 230 HOH HOH . L 5 HOH A 30 230 227 HOH HOH . L 5 HOH A 31 231 232 HOH HOH . L 5 HOH A 32 232 235 HOH HOH . L 5 HOH A 33 233 233 HOH HOH . L 5 HOH A 34 234 234 HOH HOH . L 5 HOH A 35 235 231 HOH HOH . L 5 HOH A 36 236 236 HOH HOH . L 5 HOH A 37 237 237 HOH HOH . L 5 HOH A 38 238 238 HOH HOH . L 5 HOH A 39 239 240 HOH HOH . L 5 HOH A 40 240 239 HOH HOH . L 5 HOH A 41 241 241 HOH HOH . L 5 HOH A 42 242 242 HOH HOH . L 5 HOH A 43 243 243 HOH HOH . M 5 HOH B 1 201 201 HOH HOH . M 5 HOH B 2 202 202 HOH HOH . M 5 HOH B 3 203 203 HOH HOH . M 5 HOH B 4 204 204 HOH HOH . M 5 HOH B 5 205 205 HOH HOH . M 5 HOH B 6 206 206 HOH HOH . M 5 HOH B 7 207 207 HOH HOH . M 5 HOH B 8 208 216 HOH HOH . M 5 HOH B 9 209 208 HOH HOH . M 5 HOH B 10 210 210 HOH HOH . M 5 HOH B 11 211 209 HOH HOH . M 5 HOH B 12 212 215 HOH HOH . M 5 HOH B 13 213 211 HOH HOH . M 5 HOH B 14 214 217 HOH HOH . M 5 HOH B 15 215 212 HOH HOH . M 5 HOH B 16 216 213 HOH HOH . M 5 HOH B 17 217 214 HOH HOH . M 5 HOH B 18 218 222 HOH HOH . M 5 HOH B 19 219 218 HOH HOH . M 5 HOH B 20 220 221 HOH HOH . M 5 HOH B 21 221 225 HOH HOH . M 5 HOH B 22 222 223 HOH HOH . M 5 HOH B 23 223 219 HOH HOH . M 5 HOH B 24 224 226 HOH HOH . M 5 HOH B 25 225 220 HOH HOH . M 5 HOH B 26 226 229 HOH HOH . M 5 HOH B 27 227 224 HOH HOH . M 5 HOH B 28 228 228 HOH HOH . M 5 HOH B 29 229 227 HOH HOH . M 5 HOH B 30 230 231 HOH HOH . M 5 HOH B 31 231 230 HOH HOH . M 5 HOH B 32 232 232 HOH HOH . M 5 HOH B 33 233 233 HOH HOH . M 5 HOH B 34 234 236 HOH HOH . M 5 HOH B 35 235 234 HOH HOH . M 5 HOH B 36 236 238 HOH HOH . M 5 HOH B 37 237 235 HOH HOH . M 5 HOH B 38 238 239 HOH HOH . M 5 HOH B 39 239 237 HOH HOH . M 5 HOH B 40 240 240 HOH HOH . M 5 HOH B 41 241 241 HOH HOH . M 5 HOH B 42 242 244 HOH HOH . M 5 HOH B 43 243 242 HOH HOH . M 5 HOH B 44 244 243 HOH HOH . M 5 HOH B 45 245 245 HOH HOH . M 5 HOH B 46 246 246 HOH HOH . M 5 HOH B 47 247 248 HOH HOH . M 5 HOH B 48 248 236 HOH HOH . M 5 HOH B 49 249 247 HOH HOH . M 5 HOH B 50 250 249 HOH HOH . M 5 HOH B 51 251 250 HOH HOH . M 5 HOH B 52 252 251 HOH HOH . M 5 HOH B 53 253 252 HOH HOH . N 5 HOH C 1 201 201 HOH HOH . N 5 HOH C 2 202 202 HOH HOH . N 5 HOH C 3 203 203 HOH HOH . N 5 HOH C 4 204 206 HOH HOH . N 5 HOH C 5 205 204 HOH HOH . N 5 HOH C 6 206 205 HOH HOH . N 5 HOH C 7 207 211 HOH HOH . N 5 HOH C 8 208 208 HOH HOH . N 5 HOH C 9 209 207 HOH HOH . N 5 HOH C 10 210 209 HOH HOH . N 5 HOH C 11 211 210 HOH HOH . N 5 HOH C 12 212 228 HOH HOH . N 5 HOH C 13 213 218 HOH HOH . N 5 HOH C 14 214 213 HOH HOH . N 5 HOH C 15 215 212 HOH HOH . N 5 HOH C 16 216 217 HOH HOH . N 5 HOH C 17 217 215 HOH HOH . N 5 HOH C 18 218 219 HOH HOH . N 5 HOH C 19 219 214 HOH HOH . N 5 HOH C 20 220 223 HOH HOH . N 5 HOH C 21 221 220 HOH HOH . N 5 HOH C 22 222 221 HOH HOH . N 5 HOH C 23 223 222 HOH HOH . N 5 HOH C 24 224 216 HOH HOH . N 5 HOH C 25 225 225 HOH HOH . N 5 HOH C 26 226 224 HOH HOH . N 5 HOH C 27 227 226 HOH HOH . N 5 HOH C 28 228 227 HOH HOH . N 5 HOH C 29 229 231 HOH HOH . N 5 HOH C 30 230 230 HOH HOH . N 5 HOH C 31 231 232 HOH HOH . N 5 HOH C 32 232 233 HOH HOH . N 5 HOH C 33 233 234 HOH HOH . N 5 HOH C 34 234 229 HOH HOH . N 5 HOH C 35 235 235 HOH HOH . N 5 HOH C 36 236 237 HOH HOH . N 5 HOH C 37 237 238 HOH HOH . N 5 HOH C 38 238 239 HOH HOH . N 5 HOH C 39 239 240 HOH HOH . N 5 HOH C 40 240 241 HOH HOH . N 5 HOH C 41 241 242 HOH HOH . N 5 HOH C 42 242 243 HOH HOH . N 5 HOH C 43 243 244 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 4 _atom_site.Cartn_x 28.188 _atom_site.Cartn_y -18.773 _atom_site.Cartn_z 60.574 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 10.09 _atom_site.pdbx_formal_charge 0 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 102 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #