data_8Q2F # _model_server_result.job_id sUFWHDcX4IvwPU_YGmGI4Q _model_server_result.datetime_utc '2025-01-19 11:34:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8q2f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":501}' # _entry.id 8Q2F # _exptl.entry_id 8Q2F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8Q2F _cell.length_a 167.44 _cell.length_b 167.44 _cell.length_c 364.743 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8Q2F _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 ? dimeric 2 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 1 1 C,D,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA 2 1 E,F,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 P N N ? 2 Y N N ? 2 DA N N ? 2 LA N N ? 2 VA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 401 A CYS 400 1_555 G FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc2 B SG CYS 401 B CYS 400 1_555 P FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc3 C SG CYS 401 C CYS 400 1_555 Y FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc4 D SG CYS 401 D CYS 400 1_555 DA FE HEM . D HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc5 E SG CYS 401 E CYS 400 1_555 LA FE HEM . E HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc6 F SG CYS 401 F CYS 400 1_555 VA FE HEM . F HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 148 n n CHA C4D HEM doub 149 n n CHA HHA HEM sing 150 n n CHB C4A HEM sing 151 n n CHB C1B HEM doub 152 n n CHB HHB HEM sing 153 n n CHC C4B HEM sing 154 n n CHC C1C HEM doub 155 n n CHC HHC HEM sing 156 n n CHD C4C HEM doub 157 n n CHD C1D HEM sing 158 n n CHD HHD HEM sing 159 n n C1A C2A HEM doub 160 n y C1A NA HEM sing 161 n y C2A C3A HEM sing 162 n y C2A CAA HEM sing 163 n n C3A C4A HEM doub 164 n y C3A CMA HEM sing 165 n n C4A NA HEM sing 166 n y CMA HMA HEM sing 167 n n CMA HMAA HEM sing 168 n n CMA HMAB HEM sing 169 n n CAA CBA HEM sing 170 n n CAA HAA HEM sing 171 n n CAA HAAA HEM sing 172 n n CBA CGA HEM sing 173 n n CBA HBA HEM sing 174 n n CBA HBAA HEM sing 175 n n CGA O1A HEM doub 176 n n CGA O2A HEM sing 177 n n C1B C2B HEM sing 178 n n C1B NB HEM sing 179 n n C2B C3B HEM doub 180 n n C2B CMB HEM sing 181 n n C3B C4B HEM sing 182 n n C3B CAB HEM sing 183 n n C4B NB HEM doub 184 n n CMB HMB HEM sing 185 n n CMB HMBA HEM sing 186 n n CMB HMBB HEM sing 187 n n CAB CBB HEM doub 188 n n CAB HAB HEM sing 189 n n CBB HBB HEM sing 190 n n CBB HBBA HEM sing 191 n n C1C C2C HEM sing 192 n y C1C NC HEM sing 193 n y C2C C3C HEM doub 194 n y C2C CMC HEM sing 195 n n C3C C4C HEM sing 196 n y C3C CAC HEM sing 197 n n C4C NC HEM sing 198 n y CMC HMC HEM sing 199 n n CMC HMCA HEM sing 200 n n CMC HMCB HEM sing 201 n n CAC CBC HEM doub 202 n n CAC HAC HEM sing 203 n n CBC HBC HEM sing 204 n n CBC HBCA HEM sing 205 n n C1D C2D HEM sing 206 n n C1D ND HEM doub 207 n n C2D C3D HEM doub 208 n n C2D CMD HEM sing 209 n n C3D C4D HEM sing 210 n n C3D CAD HEM sing 211 n n C4D ND HEM sing 212 n n CMD HMD HEM sing 213 n n CMD HMDA HEM sing 214 n n CMD HMDB HEM sing 215 n n CAD CBD HEM sing 216 n n CAD HAD HEM sing 217 n n CAD HADA HEM sing 218 n n CBD CGD HEM sing 219 n n CBD HBD HEM sing 220 n n CBD HBDA HEM sing 221 n n CGD O1D HEM doub 222 n n CGD O2D HEM sing 223 n n O2A H2A HEM sing 224 n n O2D H2D HEM sing 225 n n FE NA HEM sing 226 n n FE NB HEM sing 227 n n FE NC HEM sing 228 n n FE ND HEM sing 229 n n # _atom_sites.entry_id 8Q2F _atom_sites.fract_transf_matrix[1][1] 0.005972 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005972 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002742 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 HEM A 1 501 500 HEM HEM . H 3 GOL A 1 502 503 GOL GOL . I 3 GOL A 1 503 504 GOL GOL . J 4 ACT A 1 504 505 ACT ACT . K 4 ACT A 1 505 506 ACT ACT . L 3 GOL A 1 506 507 GOL GOL . M 5 SO4 A 1 507 508 SO4 SO4 . N 5 SO4 A 1 508 509 SO4 SO4 . O 5 SO4 A 1 509 510 SO4 SO4 . P 2 HEM B 1 501 500 HEM HEM . Q 3 GOL B 1 502 502 GOL GOL . R 3 GOL B 1 503 503 GOL GOL . S 3 GOL B 1 504 505 GOL GOL . T 4 ACT B 1 505 506 ACT ACT . U 4 ACT B 1 506 507 ACT ACT . V 4 ACT B 1 507 508 ACT ACT . W 4 ACT B 1 508 509 ACT ACT . X 5 SO4 B 1 509 510 SO4 SO4 . Y 2 HEM C 1 501 500 HEM HEM . Z 5 SO4 C 1 505 501 SO4 SO4 . AA 5 SO4 C 1 502 502 SO4 SO4 . BA 5 SO4 C 1 503 503 SO4 SO4 . CA 5 SO4 C 1 504 504 SO4 SO4 . DA 2 HEM D 1 501 500 HEM HEM . EA 3 GOL D 1 502 502 GOL GOL . FA 4 ACT D 1 503 505 ACT ACT . GA 4 ACT D 1 504 506 ACT ACT . HA 4 ACT D 1 505 507 ACT ACT . IA 5 SO4 D 1 506 508 SO4 SO4 . JA 5 SO4 D 1 507 509 SO4 SO4 . KA 5 SO4 D 1 508 510 SO4 SO4 . LA 2 HEM E 1 501 500 HEM HEM . MA 3 GOL E 1 502 503 GOL GOL . NA 3 GOL E 1 503 504 GOL GOL . OA 4 ACT E 1 504 505 ACT ACT . PA 3 GOL E 1 505 506 GOL GOL . QA 3 GOL E 1 506 507 GOL GOL . RA 3 GOL E 1 507 508 GOL GOL . SA 4 ACT E 1 508 509 ACT ACT . TA 5 SO4 E 1 509 511 SO4 SO4 . UA 5 SO4 E 1 510 512 SO4 SO4 . VA 2 HEM F 1 501 500 HEM HEM . WA 3 GOL F 1 502 503 GOL GOL . XA 4 ACT F 1 503 504 ACT ACT . YA 4 ACT F 1 504 505 ACT ACT . ZA 4 ACT F 1 505 506 ACT ACT . AB 5 SO4 F 1 506 507 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . G 2 36.831 49.936 34.781 1 61.2 ? CHA HEM 501 A 1 HETATM 2 C CHB HEM . . . G 2 33.437 48.378 31.678 1 69.85 ? CHB HEM 501 A 1 HETATM 3 C CHC HEM . . . G 2 36.68 45.422 29.618 1 75.55 ? CHC HEM 501 A 1 HETATM 4 C CHD HEM . . . G 2 39.85 46.516 33.103 1 63.58 ? CHD HEM 501 A 1 HETATM 5 C C1A HEM . . . G 2 35.623 49.785 34.132 1 62.25 ? C1A HEM 501 A 1 HETATM 6 C C2A HEM . . . G 2 34.381 50.473 34.441 1 57.67 ? C2A HEM 501 A 1 HETATM 7 C C3A HEM . . . G 2 33.458 50.042 33.575 1 51.09 ? C3A HEM 501 A 1 HETATM 8 C C4A HEM . . . G 2 34.065 49.062 32.698 1 65.9 ? C4A HEM 501 A 1 HETATM 9 C CMA HEM . . . G 2 31.989 50.497 33.515 1 49.65 ? CMA HEM 501 A 1 HETATM 10 C CAA HEM . . . G 2 34.18 51.536 35.553 1 60.6 ? CAA HEM 501 A 1 HETATM 11 C CBA HEM . . . G 2 33.606 50.941 36.837 1 65.4 ? CBA HEM 501 A 1 HETATM 12 C CGA HEM . . . G 2 33.362 52.023 37.869 1 81.05 ? CGA HEM 501 A 1 HETATM 13 O O1A HEM . . . G 2 33.683 53.211 37.585 1 78.07 ? O1A HEM 501 A 1 HETATM 14 O O2A HEM . . . G 2 32.84 51.705 38.979 1 68.51 ? O2A HEM 501 A 1 HETATM 15 C C1B HEM . . . G 2 34.033 47.474 30.823 1 69.58 ? C1B HEM 501 A 1 HETATM 16 C C2B HEM . . . G 2 33.416 46.863 29.664 1 71.25 ? C2B HEM 501 A 1 HETATM 17 C C3B HEM . . . G 2 34.318 46.04 29.105 1 62.62 ? C3B HEM 501 A 1 HETATM 18 C C4B HEM . . . G 2 35.527 46.12 29.885 1 62.32 ? C4B HEM 501 A 1 HETATM 19 C CMB HEM . . . G 2 31.96 47.144 29.224 1 80.51 ? CMB HEM 501 A 1 HETATM 20 C CAB HEM . . . G 2 34.226 45.147 27.845 1 68.64 ? CAB HEM 501 A 1 HETATM 21 C CBB HEM . . . G 2 33.268 45.244 26.918 1 75.34 ? CBB HEM 501 A 1 HETATM 22 C C1C HEM . . . G 2 37.848 45.499 30.34 1 86.46 ? C1C HEM 501 A 1 HETATM 23 C C2C HEM . . . G 2 39.124 44.917 29.974 1 75.15 ? C2C HEM 501 A 1 HETATM 24 C C3C HEM . . . G 2 40.003 45.217 30.919 1 67.02 ? C3C HEM 501 A 1 HETATM 25 C C4C HEM . . . G 2 39.322 46.001 31.941 1 68.34 ? C4C HEM 501 A 1 HETATM 26 C CMC HEM . . . G 2 39.457 44.096 28.709 1 70.56 ? CMC HEM 501 A 1 HETATM 27 C CAC HEM . . . G 2 41.471 44.749 30.847 1 81.16 ? CAC HEM 501 A 1 HETATM 28 C CBC HEM . . . G 2 42.415 45.197 31.675 1 79.78 ? CBC HEM 501 A 1 HETATM 29 C C1D HEM . . . G 2 39.297 47.512 33.878 1 60.26 ? C1D HEM 501 A 1 HETATM 30 C C2D HEM . . . G 2 39.877 48.07 35.083 1 62.2 ? C2D HEM 501 A 1 HETATM 31 C C3D HEM . . . G 2 39.053 49.01 35.552 1 61.45 ? C3D HEM 501 A 1 HETATM 32 C C4D HEM . . . G 2 37.915 49.092 34.655 1 64.72 ? C4D HEM 501 A 1 HETATM 33 C CMD HEM . . . G 2 41.218 47.639 35.708 1 71.44 ? CMD HEM 501 A 1 HETATM 34 C CAD HEM . . . G 2 39.278 49.873 36.814 1 65.45 ? CAD HEM 501 A 1 HETATM 35 C CBD HEM . . . G 2 40.289 50.975 36.491 1 84.68 ? CBD HEM 501 A 1 HETATM 36 C CGD HEM . . . G 2 40.221 52.119 37.476 1 88.53 ? CGD HEM 501 A 1 HETATM 37 O O1D HEM . . . G 2 39.118 52.395 38.035 1 77.35 ? O1D HEM 501 A 1 HETATM 38 O O2D HEM . . . G 2 41.282 52.771 37.683 1 71.09 ? O2D HEM 501 A 1 HETATM 39 N NA HEM . . . G 2 35.39 48.93 33.069 1 68.59 ? NA HEM 501 A 1 HETATM 40 N NB HEM . . . G 2 35.323 46.999 30.927 1 68.42 ? NB HEM 501 A 1 HETATM 41 N NC HEM . . . G 2 38.007 46.152 31.547 1 79.61 ? NC HEM 501 A 1 HETATM 42 N ND HEM . . . G 2 38.099 48.159 33.649 1 58.32 ? ND HEM 501 A 1 HETATM 43 FE FE HEM . . . G 2 36.713 47.553 32.313 1 67.82 ? FE HEM 501 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 160 _model_server_stats.query_time_ms 487 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 43 #