data_8Q2F
#
_model_server_result.job_id            mri6EXYgo_4NOx4w0EsrUg 
_model_server_result.datetime_utc      '2025-01-19 11:39:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8q2f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Y","auth_seq_id":501}' 
#
_entry.id    8Q2F 
#
_exptl.entry_id    8Q2F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8Q2F 
_cell.length_a            167.44 
_cell.length_b            167.44 
_cell.length_c            364.743 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8Q2F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
? dimeric 2 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 1 1 
C,D,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA 2 1 
E,F,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 P N N 
? 2 Y N N 
? 2 DA N N 
? 2 LA N N 
? 2 VA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 401 A CYS 400 1_555 G FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc2 B SG CYS 401 B CYS 400 1_555 P FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc3 C SG CYS 401 C CYS 400 1_555 Y FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
metalc ? metalc4 D SG CYS 401 D CYS 400 1_555 DA FE HEM . D HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc5 E SG CYS 401 E CYS 400 1_555 LA FE HEM . E HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc6 F SG CYS 401 F CYS 400 1_555 VA FE HEM . F HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 148 n n 
CHA C4D HEM doub 149 n n 
CHA HHA HEM sing 150 n n 
CHB C4A HEM sing 151 n n 
CHB C1B HEM doub 152 n n 
CHB HHB HEM sing 153 n n 
CHC C4B HEM sing 154 n n 
CHC C1C HEM doub 155 n n 
CHC HHC HEM sing 156 n n 
CHD C4C HEM doub 157 n n 
CHD C1D HEM sing 158 n n 
CHD HHD HEM sing 159 n n 
C1A C2A HEM doub 160 n y 
C1A NA HEM sing 161 n y 
C2A C3A HEM sing 162 n y 
C2A CAA HEM sing 163 n n 
C3A C4A HEM doub 164 n y 
C3A CMA HEM sing 165 n n 
C4A NA HEM sing 166 n y 
CMA HMA HEM sing 167 n n 
CMA HMAA HEM sing 168 n n 
CMA HMAB HEM sing 169 n n 
CAA CBA HEM sing 170 n n 
CAA HAA HEM sing 171 n n 
CAA HAAA HEM sing 172 n n 
CBA CGA HEM sing 173 n n 
CBA HBA HEM sing 174 n n 
CBA HBAA HEM sing 175 n n 
CGA O1A HEM doub 176 n n 
CGA O2A HEM sing 177 n n 
C1B C2B HEM sing 178 n n 
C1B NB HEM sing 179 n n 
C2B C3B HEM doub 180 n n 
C2B CMB HEM sing 181 n n 
C3B C4B HEM sing 182 n n 
C3B CAB HEM sing 183 n n 
C4B NB HEM doub 184 n n 
CMB HMB HEM sing 185 n n 
CMB HMBA HEM sing 186 n n 
CMB HMBB HEM sing 187 n n 
CAB CBB HEM doub 188 n n 
CAB HAB HEM sing 189 n n 
CBB HBB HEM sing 190 n n 
CBB HBBA HEM sing 191 n n 
C1C C2C HEM sing 192 n y 
C1C NC HEM sing 193 n y 
C2C C3C HEM doub 194 n y 
C2C CMC HEM sing 195 n n 
C3C C4C HEM sing 196 n y 
C3C CAC HEM sing 197 n n 
C4C NC HEM sing 198 n y 
CMC HMC HEM sing 199 n n 
CMC HMCA HEM sing 200 n n 
CMC HMCB HEM sing 201 n n 
CAC CBC HEM doub 202 n n 
CAC HAC HEM sing 203 n n 
CBC HBC HEM sing 204 n n 
CBC HBCA HEM sing 205 n n 
C1D C2D HEM sing 206 n n 
C1D ND HEM doub 207 n n 
C2D C3D HEM doub 208 n n 
C2D CMD HEM sing 209 n n 
C3D C4D HEM sing 210 n n 
C3D CAD HEM sing 211 n n 
C4D ND HEM sing 212 n n 
CMD HMD HEM sing 213 n n 
CMD HMDA HEM sing 214 n n 
CMD HMDB HEM sing 215 n n 
CAD CBD HEM sing 216 n n 
CAD HAD HEM sing 217 n n 
CAD HADA HEM sing 218 n n 
CBD CGD HEM sing 219 n n 
CBD HBD HEM sing 220 n n 
CBD HBDA HEM sing 221 n n 
CGD O1D HEM doub 222 n n 
CGD O2D HEM sing 223 n n 
O2A H2A HEM sing 224 n n 
O2D H2D HEM sing 225 n n 
FE NA HEM sing 226 n n 
FE NB HEM sing 227 n n 
FE NC HEM sing 228 n n 
FE ND HEM sing 229 n n 
#
_atom_sites.entry_id                     8Q2F 
_atom_sites.fract_transf_matrix[1][1]    0.005972 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005972 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002742 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 HEM A 1 501 500 HEM HEM . 
H 3 GOL A 1 502 503 GOL GOL . 
I 3 GOL A 1 503 504 GOL GOL . 
J 4 ACT A 1 504 505 ACT ACT . 
K 4 ACT A 1 505 506 ACT ACT . 
L 3 GOL A 1 506 507 GOL GOL . 
M 5 SO4 A 1 507 508 SO4 SO4 . 
N 5 SO4 A 1 508 509 SO4 SO4 . 
O 5 SO4 A 1 509 510 SO4 SO4 . 
P 2 HEM B 1 501 500 HEM HEM . 
Q 3 GOL B 1 502 502 GOL GOL . 
R 3 GOL B 1 503 503 GOL GOL . 
S 3 GOL B 1 504 505 GOL GOL . 
T 4 ACT B 1 505 506 ACT ACT . 
U 4 ACT B 1 506 507 ACT ACT . 
V 4 ACT B 1 507 508 ACT ACT . 
W 4 ACT B 1 508 509 ACT ACT . 
X 5 SO4 B 1 509 510 SO4 SO4 . 
Y 2 HEM C 1 501 500 HEM HEM . 
Z 5 SO4 C 1 505 501 SO4 SO4 . 
AA 5 SO4 C 1 502 502 SO4 SO4 . 
BA 5 SO4 C 1 503 503 SO4 SO4 . 
CA 5 SO4 C 1 504 504 SO4 SO4 . 
DA 2 HEM D 1 501 500 HEM HEM . 
EA 3 GOL D 1 502 502 GOL GOL . 
FA 4 ACT D 1 503 505 ACT ACT . 
GA 4 ACT D 1 504 506 ACT ACT . 
HA 4 ACT D 1 505 507 ACT ACT . 
IA 5 SO4 D 1 506 508 SO4 SO4 . 
JA 5 SO4 D 1 507 509 SO4 SO4 . 
KA 5 SO4 D 1 508 510 SO4 SO4 . 
LA 2 HEM E 1 501 500 HEM HEM . 
MA 3 GOL E 1 502 503 GOL GOL . 
NA 3 GOL E 1 503 504 GOL GOL . 
OA 4 ACT E 1 504 505 ACT ACT . 
PA 3 GOL E 1 505 506 GOL GOL . 
QA 3 GOL E 1 506 507 GOL GOL . 
RA 3 GOL E 1 507 508 GOL GOL . 
SA 4 ACT E 1 508 509 ACT ACT . 
TA 5 SO4 E 1 509 511 SO4 SO4 . 
UA 5 SO4 E 1 510 512 SO4 SO4 . 
VA 2 HEM F 1 501 500 HEM HEM . 
WA 3 GOL F 1 502 503 GOL GOL . 
XA 4 ACT F 1 503 504 ACT ACT . 
YA 4 ACT F 1 504 505 ACT ACT . 
ZA 4 ACT F 1 505 506 ACT ACT . 
AB 5 SO4 F 1 506 507 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . Y 2 97.142 -82.602 -49.004 1 84.89 ? CHA HEM 501 C 1 
HETATM 2 C CHB HEM . . . Y 2 100.785 -80.95 -51.762 1 87.32 ? CHB HEM 501 C 1 
HETATM 3 C CHC HEM . . . Y 2 97.631 -78.177 -54.162 1 100.93 ? CHC HEM 501 C 1 
HETATM 4 C CHD HEM . . . Y 2 94.289 -79.098 -50.778 1 89.43 ? CHD HEM 501 C 1 
HETATM 5 C C1A HEM . . . Y 2 98.389 -82.423 -49.555 1 81.01 ? C1A HEM 501 C 1 
HETATM 6 C C2A HEM . . . Y 2 99.593 -83.134 -49.183 1 76.29 ? C2A HEM 501 C 1 
HETATM 7 C C3A HEM . . . Y 2 100.592 -82.68 -49.944 1 72.93 ? C3A HEM 501 C 1 
HETATM 8 C C4A HEM . . . Y 2 100.065 -81.662 -50.827 1 87.96 ? C4A HEM 501 C 1 
HETATM 9 C CMA HEM . . . Y 2 102.061 -83.144 -49.903 1 75.19 ? CMA HEM 501 C 1 
HETATM 10 C CAA HEM . . . Y 2 99.681 -84.228 -48.098 1 69.41 ? CAA HEM 501 C 1 
HETATM 11 C CBA HEM . . . Y 2 99.93 -83.597 -46.735 1 68.59 ? CBA HEM 501 C 1 
HETATM 12 C CGA HEM . . . Y 2 100.288 -84.692 -45.764 1 87.53 ? CGA HEM 501 C 1 
HETATM 13 O O1A HEM . . . Y 2 100.717 -84.381 -44.615 1 77.18 ? O1A HEM 501 C 1 
HETATM 14 O O2A HEM . . . Y 2 100.155 -85.885 -46.154 1 86.94 ? O2A HEM 501 C 1 
HETATM 15 C C1B HEM . . . Y 2 100.248 -80.088 -52.691 1 83.36 ? C1B HEM 501 C 1 
HETATM 16 C C2B HEM . . . Y 2 100.949 -79.477 -53.803 1 81.58 ? C2B HEM 501 C 1 
HETATM 17 C C3B HEM . . . Y 2 100.069 -78.706 -54.467 1 75.06 ? C3B HEM 501 C 1 
HETATM 18 C C4B HEM . . . Y 2 98.794 -78.818 -53.79 1 87.28 ? C4B HEM 501 C 1 
HETATM 19 C CMB HEM . . . Y 2 102.449 -79.717 -54.101 1 90.07 ? CMB HEM 501 C 1 
HETATM 20 C CAB HEM . . . Y 2 100.25 -77.825 -55.73 1 81.82 ? CAB HEM 501 C 1 
HETATM 21 C CBB HEM . . . Y 2 101.372 -77.747 -56.453 1 90.21 ? CBB HEM 501 C 1 
HETATM 22 C C1C HEM . . . Y 2 96.427 -78.226 -53.491 1 92.74 ? C1C HEM 501 C 1 
HETATM 23 C C2C HEM . . . Y 2 95.174 -77.672 -53.956 1 79.95 ? C2C HEM 501 C 1 
HETATM 24 C C3C HEM . . . Y 2 94.24 -77.922 -53.042 1 78.2 ? C3C HEM 501 C 1 
HETATM 25 C C4C HEM . . . Y 2 94.868 -78.641 -51.943 1 80.06 ? C4C HEM 501 C 1 
HETATM 26 C CMC HEM . . . Y 2 94.944 -76.93 -55.289 1 74.01 ? CMC HEM 501 C 1 
HETATM 27 C CAC HEM . . . Y 2 92.77 -77.477 -53.199 1 84.83 ? CAC HEM 501 C 1 
HETATM 28 C CBC HEM . . . Y 2 91.802 -77.907 -52.388 1 83.46 ? CBC HEM 501 C 1 
HETATM 29 C C1D HEM . . . Y 2 94.746 -80.154 -50.017 1 97.84 ? C1D HEM 501 C 1 
HETATM 30 C C2D HEM . . . Y 2 94.023 -80.842 -48.961 1 89.31 ? C2D HEM 501 C 1 
HETATM 31 C C3D HEM . . . Y 2 94.806 -81.799 -48.47 1 92.03 ? C3D HEM 501 C 1 
HETATM 32 C C4D HEM . . . Y 2 96.06 -81.772 -49.2 1 92.04 ? C4D HEM 501 C 1 
HETATM 33 C CMD HEM . . . Y 2 92.598 -80.528 -48.467 1 79.01 ? CMD HEM 501 C 1 
HETATM 34 C CAD HEM . . . Y 2 94.41 -82.775 -47.342 1 90.31 ? CAD HEM 501 C 1 
HETATM 35 C CBD HEM . . . Y 2 93.761 -83.969 -48.044 1 116.11 ? CBD HEM 501 C 1 
HETATM 36 C CGD HEM . . . Y 2 93.167 -84.963 -47.077 1 112.03 ? CGD HEM 501 C 1 
HETATM 37 O O1D HEM . . . Y 2 92.307 -85.779 -47.521 1 93.75 ? O1D HEM 501 C 1 
HETATM 38 O O2D HEM . . . Y 2 93.544 -84.941 -45.873 1 97.2 ? O2D HEM 501 C 1 
HETATM 39 N NA HEM . . . Y 2 98.713 -81.532 -50.562 1 88.56 ? NA HEM 501 C 1 
HETATM 40 N NB HEM . . . Y 2 98.937 -79.666 -52.713 1 83.45 ? NB HEM 501 C 1 
HETATM 41 N NC HEM . . . Y 2 96.202 -78.808 -52.259 1 85.1 ? NC HEM 501 C 1 
HETATM 42 N ND HEM . . . Y 2 95.986 -80.753 -50.132 1 90.56 ? ND HEM 501 C 1 
HETATM 43 FE FE HEM . . . Y 2 97.432 -80.225 -51.451 1 80.44 ? FE HEM 501 C 1 
#
_model_server_stats.io_time_ms              35 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    76 
_model_server_stats.query_time_ms           449 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           43 
#