data_8Q2F
#
_model_server_result.job_id            TsRS6aJiFfzBwNi-WyRupA 
_model_server_result.datetime_utc      '2025-01-19 11:29:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8q2f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"EA","auth_seq_id":502}' 
#
_entry.id    8Q2F 
#
_exptl.entry_id    8Q2F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    13 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8Q2F 
_cell.length_a            167.44 
_cell.length_b            167.44 
_cell.length_c            364.743 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 8Q2F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
? dimeric 2 author_defined_assembly 3 
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loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 1 1 
C,D,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA 2 1 
E,F,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 I N N 
? 3 L N N 
? 3 Q N N 
? 3 R N N 
? 3 S N N 
? 3 EA N N 
? 3 MA N N 
? 3 NA N N 
? 3 PA N N 
? 3 QA N N 
? 3 RA N N 
? 3 WA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 401 A CYS 400 1_555 G FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc2 B SG CYS 401 B CYS 400 1_555 P FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc3 C SG CYS 401 C CYS 400 1_555 Y FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
metalc ? metalc4 D SG CYS 401 D CYS 400 1_555 DA FE HEM . D HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc5 E SG CYS 401 E CYS 400 1_555 LA FE HEM . E HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc6 F SG CYS 401 F CYS 400 1_555 VA FE HEM . F HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 135 n n 
C1 C2 GOL sing 136 n n 
C1 H11 GOL sing 137 n n 
C1 H12 GOL sing 138 n n 
O1 HO1 GOL sing 139 n n 
C2 O2 GOL sing 140 n n 
C2 C3 GOL sing 141 n n 
C2 H2 GOL sing 142 n n 
O2 HO2 GOL sing 143 n n 
C3 O3 GOL sing 144 n n 
C3 H31 GOL sing 145 n n 
C3 H32 GOL sing 146 n n 
O3 HO3 GOL sing 147 n n 
#
_atom_sites.entry_id                     8Q2F 
_atom_sites.fract_transf_matrix[1][1]    0.005972 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005972 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002742 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 HEM A 1 501 500 HEM HEM . 
H 3 GOL A 1 502 503 GOL GOL . 
I 3 GOL A 1 503 504 GOL GOL . 
J 4 ACT A 1 504 505 ACT ACT . 
K 4 ACT A 1 505 506 ACT ACT . 
L 3 GOL A 1 506 507 GOL GOL . 
M 5 SO4 A 1 507 508 SO4 SO4 . 
N 5 SO4 A 1 508 509 SO4 SO4 . 
O 5 SO4 A 1 509 510 SO4 SO4 . 
P 2 HEM B 1 501 500 HEM HEM . 
Q 3 GOL B 1 502 502 GOL GOL . 
R 3 GOL B 1 503 503 GOL GOL . 
S 3 GOL B 1 504 505 GOL GOL . 
T 4 ACT B 1 505 506 ACT ACT . 
U 4 ACT B 1 506 507 ACT ACT . 
V 4 ACT B 1 507 508 ACT ACT . 
W 4 ACT B 1 508 509 ACT ACT . 
X 5 SO4 B 1 509 510 SO4 SO4 . 
Y 2 HEM C 1 501 500 HEM HEM . 
Z 5 SO4 C 1 505 501 SO4 SO4 . 
AA 5 SO4 C 1 502 502 SO4 SO4 . 
BA 5 SO4 C 1 503 503 SO4 SO4 . 
CA 5 SO4 C 1 504 504 SO4 SO4 . 
DA 2 HEM D 1 501 500 HEM HEM . 
EA 3 GOL D 1 502 502 GOL GOL . 
FA 4 ACT D 1 503 505 ACT ACT . 
GA 4 ACT D 1 504 506 ACT ACT . 
HA 4 ACT D 1 505 507 ACT ACT . 
IA 5 SO4 D 1 506 508 SO4 SO4 . 
JA 5 SO4 D 1 507 509 SO4 SO4 . 
KA 5 SO4 D 1 508 510 SO4 SO4 . 
LA 2 HEM E 1 501 500 HEM HEM . 
MA 3 GOL E 1 502 503 GOL GOL . 
NA 3 GOL E 1 503 504 GOL GOL . 
OA 4 ACT E 1 504 505 ACT ACT . 
PA 3 GOL E 1 505 506 GOL GOL . 
QA 3 GOL E 1 506 507 GOL GOL . 
RA 3 GOL E 1 507 508 GOL GOL . 
SA 4 ACT E 1 508 509 ACT ACT . 
TA 5 SO4 E 1 509 511 SO4 SO4 . 
UA 5 SO4 E 1 510 512 SO4 SO4 . 
VA 2 HEM F 1 501 500 HEM HEM . 
WA 3 GOL F 1 502 503 GOL GOL . 
XA 4 ACT F 1 503 504 ACT ACT . 
YA 4 ACT F 1 504 505 ACT ACT . 
ZA 4 ACT F 1 505 506 ACT ACT . 
AB 5 SO4 F 1 506 507 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . EA 3 96.942 -6.163 -67.09 1 117 ? C1 GOL 502 D 1 
HETATM 2 O O1 GOL . . . EA 3 95.705 -6.729 -66.732 1 90.08 ? O1 GOL 502 D 1 
HETATM 3 C C2 GOL . . . EA 3 97.886 -7.31 -67.602 1 127.92 ? C2 GOL 502 D 1 
HETATM 4 O O2 GOL . . . EA 3 97.561 -7.737 -68.889 1 97.79 ? O2 GOL 502 D 1 
HETATM 5 C C3 GOL . . . EA 3 99.337 -6.732 -67.513 1 118.82 ? C3 GOL 502 D 1 
HETATM 6 O O3 GOL . . . EA 3 100.227 -7.786 -67.779 1 107.32 ? O3 GOL 502 D 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    52 
_model_server_stats.query_time_ms           260 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#