data_8Q3Q
#
_model_server_result.job_id            SrQw6HOAEcMjDgMiQeeZvA 
_model_server_result.datetime_utc      '2024-11-14 20:47:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8q3q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"MA","auth_seq_id":1000}' 
#
_entry.id    8Q3Q 
#
_exptl.entry_id    8Q3Q 
_exptl.method      'ELECTRON MICROSCOPY' 
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_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    18 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8Q3Q 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8Q3Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    18-meric 
_pdbx_struct_assembly.oligomeric_count      18 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 S N N 
? 2 U N N 
? 2 W N N 
? 2 Y N N 
? 2 AA N N 
? 2 CA N N 
? 2 EA N N 
? 2 GA N N 
? 2 IA N N 
? 2 KA N N 
? 2 MA N N 
? 2 OA N N 
? 2 QA N N 
? 2 SA N N 
? 2 UA N N 
? 2 WA N N 
? 2 YA N N 
? 2 AB N N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     8Q3Q 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
S 2 ADP a 1 1000 1000 ADP ADP . 
T 3 MG a 1 1001 1001 MG MG . 
U 2 ADP r 1 1000 1000 ADP ADP . 
V 3 MG r 1 1001 1001 MG MG . 
W 2 ADP q 1 1000 1000 ADP ADP . 
X 3 MG q 1 1001 1001 MG MG . 
Y 2 ADP p 1 1000 1000 ADP ADP . 
Z 3 MG p 1 1001 1001 MG MG . 
AA 2 ADP o 1 1000 1000 ADP ADP . 
BA 3 MG o 1 1001 1001 MG MG . 
CA 2 ADP n 1 1000 1000 ADP ADP . 
DA 3 MG n 1 1001 1001 MG MG . 
EA 2 ADP m 1 1000 1000 ADP ADP . 
FA 3 MG m 1 1001 1001 MG MG . 
GA 2 ADP l 1 1000 1000 ADP ADP . 
HA 3 MG l 1 1001 1001 MG MG . 
IA 2 ADP k 1 1000 1000 ADP ADP . 
JA 3 MG k 1 1001 1001 MG MG . 
KA 2 ADP j 1 1000 1000 ADP ADP . 
LA 3 MG j 1 1001 1001 MG MG . 
MA 2 ADP i 1 1000 1000 ADP ADP . 
NA 3 MG i 1 1001 1001 MG MG . 
OA 2 ADP h 1 1000 1000 ADP ADP . 
PA 3 MG h 1 1001 1001 MG MG . 
QA 2 ADP g 1 1000 1000 ADP ADP . 
RA 3 MG g 1 1001 1001 MG MG . 
SA 2 ADP f 1 1000 1000 ADP ADP . 
TA 3 MG f 1 1001 1001 MG MG . 
UA 2 ADP e 1 1000 1000 ADP ADP . 
VA 3 MG e 1 1001 1001 MG MG . 
WA 2 ADP d 1 1000 1000 ADP ADP . 
XA 3 MG d 1 1001 1001 MG MG . 
YA 2 ADP c 1 1000 1000 ADP ADP . 
ZA 3 MG c 1 1001 1001 MG MG . 
AB 2 ADP b 1 1000 1000 ADP ADP . 
BB 3 MG b 1 1001 1001 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . MA 2 189.379 148.137 143.084 1 129.37 ? PB ADP 1000 i 1 
HETATM 2 O O1B ADP . . . MA 2 190.581 148.773 143.738 1 127.03 ? O1B ADP 1000 i 1 
HETATM 3 O O2B ADP . . . MA 2 188.593 149.066 142.19 1 125.98 ? O2B ADP 1000 i 1 
HETATM 4 O O3B ADP . . . MA 2 188.531 147.304 144.015 1 117.58 ? O3B ADP 1000 i 1 
HETATM 5 P PA ADP . . . MA 2 191.091 145.984 142.577 1 128.99 ? PA ADP 1000 i 1 
HETATM 6 O O1A ADP . . . MA 2 192.385 146.707 142.867 1 118.78 ? O1A ADP 1000 i 1 
HETATM 7 O O2A ADP . . . MA 2 190.446 145.138 143.647 1 125.93 ? O2A ADP 1000 i 1 
HETATM 8 O O3A ADP . . . MA 2 190.014 147.065 142.065 1 122.8 ? O3A ADP 1000 i 1 
HETATM 9 O O5' ADP . . . MA 2 191.319 145.06 141.279 1 123.42 ? O5' ADP 1000 i 1 
HETATM 10 C C5' ADP . . . MA 2 192.238 143.97 141.33 1 120.37 ? C5' ADP 1000 i 1 
HETATM 11 C C4' ADP . . . MA 2 192.312 143.292 139.969 1 117.53 ? C4' ADP 1000 i 1 
HETATM 12 O O4' ADP . . . MA 2 192.47 144.269 138.939 1 111.95 ? O4' ADP 1000 i 1 
HETATM 13 C C3' ADP . . . MA 2 193.497 142.343 139.888 1 121.84 ? C3' ADP 1000 i 1 
HETATM 14 O O3' ADP . . . MA 2 193.036 140.996 139.754 1 128.58 ? O3' ADP 1000 i 1 
HETATM 15 C C2' ADP . . . MA 2 194.273 142.751 138.651 1 120.64 ? C2' ADP 1000 i 1 
HETATM 16 O O2' ADP . . . MA 2 194.395 141.636 137.762 1 124.87 ? O2' ADP 1000 i 1 
HETATM 17 C C1' ADP . . . MA 2 193.461 143.856 137.995 1 118.38 ? C1' ADP 1000 i 1 
HETATM 18 N N9 ADP . . . MA 2 194.338 145.007 137.665 1 116.64 ? N9 ADP 1000 i 1 
HETATM 19 C C8 ADP . . . MA 2 194.318 146.207 138.274 1 120.15 ? C8 ADP 1000 i 1 
HETATM 20 N N7 ADP . . . MA 2 195.241 147.044 137.736 1 119.12 ? N7 ADP 1000 i 1 
HETATM 21 C C5 ADP . . . MA 2 195.87 146.374 136.752 1 115.29 ? C5 ADP 1000 i 1 
HETATM 22 C C6 ADP . . . MA 2 196.95 146.667 135.78 1 119.79 ? C6 ADP 1000 i 1 
HETATM 23 N N6 ADP . . . MA 2 197.558 147.878 135.751 1 120.47 ? N6 ADP 1000 i 1 
HETATM 24 N N1 ADP . . . MA 2 197.307 145.684 134.923 1 121.2 ? N1 ADP 1000 i 1 
HETATM 25 C C2 ADP . . . MA 2 196.712 144.477 134.94 1 118.9 ? C2 ADP 1000 i 1 
HETATM 26 N N3 ADP . . . MA 2 195.727 144.144 135.794 1 117.87 ? N3 ADP 1000 i 1 
HETATM 27 C C4 ADP . . . MA 2 195.268 145.033 136.707 1 115.22 ? C4 ADP 1000 i 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    121 
_model_server_stats.query_time_ms           436 
_model_server_stats.encode_time_ms          32 
_model_server_stats.element_count           27 
#