data_8Q42 # _model_server_result.job_id jcsu1nMrFZggs1F985k-Ew _model_server_result.datetime_utc '2024-12-27 19:16:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8q42 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 8Q42 # _exptl.entry_id 8Q42 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.45 _cell.angle_gamma 90 _cell.entry_id 8Q42 _cell.length_a 57.897 _cell.length_b 78.026 _cell.length_c 94.791 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8Q42 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 345 A ASP 343 1_555 E MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc2 A O LEU 359 A LEU 357 1_555 E MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc3 E MN MN . A MN 501 1_555 G O HOH . A HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc4 E MN MN . A MN 501 1_555 G O HOH . A HOH 631 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc5 E MN MN . A MN 501 1_555 G O HOH . A HOH 649 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc6 E MN MN . A MN 501 1_555 I O HOH . D HOH 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc7 B OD2 ASP 345 B ASP 343 1_555 F MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc8 B O LEU 359 B LEU 357 1_555 F MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc9 F MN MN . B MN 501 1_555 H O HOH . B HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc10 F MN MN . B MN 501 1_555 H O HOH . B HOH 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc11 F MN MN . B MN 501 1_555 H O HOH . B HOH 675 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc12 F MN MN . B MN 501 1_555 H O HOH . B HOH 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8Q42 _atom_sites.fract_transf_matrix[1][1] 0.017272 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001648 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012816 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010597 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 MN A 1 501 1 MN MN . F 4 MN B 1 501 2 MN MN . G 5 HOH A 1 601 58 HOH HOH . G 5 HOH A 2 602 182 HOH HOH . G 5 HOH A 3 603 129 HOH HOH . G 5 HOH A 4 604 187 HOH HOH . G 5 HOH A 5 605 161 HOH HOH . G 5 HOH A 6 606 211 HOH HOH . G 5 HOH A 7 607 1 HOH HOH . G 5 HOH A 8 608 191 HOH HOH . G 5 HOH A 9 609 210 HOH HOH . G 5 HOH A 10 610 26 HOH HOH . G 5 HOH A 11 611 277 HOH HOH . G 5 HOH A 12 612 170 HOH HOH . G 5 HOH A 13 613 45 HOH HOH . G 5 HOH A 14 614 280 HOH HOH . G 5 HOH A 15 615 221 HOH HOH . G 5 HOH A 16 616 52 HOH HOH . G 5 HOH A 17 617 260 HOH HOH . G 5 HOH A 18 618 189 HOH HOH . G 5 HOH A 19 619 11 HOH HOH . G 5 HOH A 20 620 190 HOH HOH . G 5 HOH A 21 621 256 HOH HOH . G 5 HOH A 22 622 109 HOH HOH . G 5 HOH A 23 623 113 HOH HOH . G 5 HOH A 24 624 271 HOH HOH . G 5 HOH A 25 625 116 HOH HOH . G 5 HOH A 26 626 235 HOH HOH . G 5 HOH A 27 627 106 HOH HOH . G 5 HOH A 28 628 141 HOH HOH . G 5 HOH A 29 629 112 HOH HOH . G 5 HOH A 30 630 31 HOH HOH . G 5 HOH A 31 631 3 HOH HOH . G 5 HOH A 32 632 154 HOH HOH . G 5 HOH A 33 633 90 HOH HOH . G 5 HOH A 34 634 169 HOH HOH . G 5 HOH A 35 635 48 HOH HOH . G 5 HOH A 36 636 100 HOH HOH . G 5 HOH A 37 637 192 HOH HOH . G 5 HOH A 38 638 38 HOH HOH . G 5 HOH A 39 639 185 HOH HOH . G 5 HOH A 40 640 265 HOH HOH . G 5 HOH A 41 641 168 HOH HOH . G 5 HOH A 42 642 54 HOH HOH . G 5 HOH A 43 643 102 HOH HOH . G 5 HOH A 44 644 220 HOH HOH . G 5 HOH A 45 645 78 HOH HOH . G 5 HOH A 46 646 204 HOH HOH . G 5 HOH A 47 647 119 HOH HOH . G 5 HOH A 48 648 92 HOH HOH . G 5 HOH A 49 649 2 HOH HOH . G 5 HOH A 50 650 13 HOH HOH . G 5 HOH A 51 651 246 HOH HOH . G 5 HOH A 52 652 153 HOH HOH . G 5 HOH A 53 653 136 HOH HOH . G 5 HOH A 54 654 14 HOH HOH . G 5 HOH A 55 655 15 HOH HOH . G 5 HOH A 56 656 40 HOH HOH . G 5 HOH A 57 657 110 HOH HOH . G 5 HOH A 58 658 80 HOH HOH . G 5 HOH A 59 659 67 HOH HOH . G 5 HOH A 60 660 99 HOH HOH . G 5 HOH A 61 661 42 HOH HOH . G 5 HOH A 62 662 65 HOH HOH . G 5 HOH A 63 663 27 HOH HOH . G 5 HOH A 64 664 157 HOH HOH . G 5 HOH A 65 665 125 HOH HOH . G 5 HOH A 66 666 122 HOH HOH . G 5 HOH A 67 667 171 HOH HOH . G 5 HOH A 68 668 96 HOH HOH . G 5 HOH A 69 669 233 HOH HOH . G 5 HOH A 70 670 93 HOH HOH . G 5 HOH A 71 671 88 HOH HOH . G 5 HOH A 72 672 73 HOH HOH . G 5 HOH A 73 673 219 HOH HOH . G 5 HOH A 74 674 44 HOH HOH . G 5 HOH A 75 675 263 HOH HOH . G 5 HOH A 76 676 37 HOH HOH . G 5 HOH A 77 677 23 HOH HOH . G 5 HOH A 78 678 36 HOH HOH . G 5 HOH A 79 679 70 HOH HOH . G 5 HOH A 80 680 50 HOH HOH . G 5 HOH A 81 681 232 HOH HOH . G 5 HOH A 82 682 163 HOH HOH . G 5 HOH A 83 683 172 HOH HOH . G 5 HOH A 84 684 180 HOH HOH . G 5 HOH A 85 685 155 HOH HOH . G 5 HOH A 86 686 83 HOH HOH . G 5 HOH A 87 687 35 HOH HOH . G 5 HOH A 88 688 236 HOH HOH . G 5 HOH A 89 689 21 HOH HOH . G 5 HOH A 90 690 193 HOH HOH . G 5 HOH A 91 691 148 HOH HOH . G 5 HOH A 92 692 79 HOH HOH . G 5 HOH A 93 693 275 HOH HOH . G 5 HOH A 94 694 111 HOH HOH . G 5 HOH A 95 695 114 HOH HOH . G 5 HOH A 96 696 85 HOH HOH . G 5 HOH A 97 697 248 HOH HOH . G 5 HOH A 98 698 139 HOH HOH . G 5 HOH A 99 699 215 HOH HOH . G 5 HOH A 100 700 59 HOH HOH . G 5 HOH A 101 701 29 HOH HOH . G 5 HOH A 102 702 84 HOH HOH . G 5 HOH A 103 703 98 HOH HOH . G 5 HOH A 104 704 134 HOH HOH . G 5 HOH A 105 705 203 HOH HOH . G 5 HOH A 106 706 17 HOH HOH . G 5 HOH A 107 707 104 HOH HOH . G 5 HOH A 108 708 178 HOH HOH . G 5 HOH A 109 709 177 HOH HOH . G 5 HOH A 110 710 197 HOH HOH . G 5 HOH A 111 711 103 HOH HOH . G 5 HOH A 112 712 115 HOH HOH . G 5 HOH A 113 713 72 HOH HOH . G 5 HOH A 114 714 12 HOH HOH . G 5 HOH A 115 715 158 HOH HOH . G 5 HOH A 116 716 242 HOH HOH . G 5 HOH A 117 717 94 HOH HOH . G 5 HOH A 118 718 250 HOH HOH . G 5 HOH A 119 719 120 HOH HOH . G 5 HOH A 120 720 123 HOH HOH . G 5 HOH A 121 721 105 HOH HOH . G 5 HOH A 122 722 146 HOH HOH . G 5 HOH A 123 723 238 HOH HOH . G 5 HOH A 124 724 206 HOH HOH . G 5 HOH A 125 725 130 HOH HOH . G 5 HOH A 126 726 75 HOH HOH . G 5 HOH A 127 727 237 HOH HOH . G 5 HOH A 128 728 74 HOH HOH . G 5 HOH A 129 729 174 HOH HOH . G 5 HOH A 130 730 267 HOH HOH . G 5 HOH A 131 731 175 HOH HOH . G 5 HOH A 132 732 207 HOH HOH . H 5 HOH B 1 601 264 HOH HOH . H 5 HOH B 2 602 241 HOH HOH . H 5 HOH B 3 603 229 HOH HOH . H 5 HOH B 4 604 179 HOH HOH . H 5 HOH B 5 605 266 HOH HOH . H 5 HOH B 6 606 240 HOH HOH . H 5 HOH B 7 607 8 HOH HOH . H 5 HOH B 8 608 49 HOH HOH . H 5 HOH B 9 609 218 HOH HOH . H 5 HOH B 10 610 201 HOH HOH . H 5 HOH B 11 611 39 HOH HOH . H 5 HOH B 12 612 269 HOH HOH . H 5 HOH B 13 613 10 HOH HOH . H 5 HOH B 14 614 131 HOH HOH . H 5 HOH B 15 615 68 HOH HOH . H 5 HOH B 16 616 243 HOH HOH . H 5 HOH B 17 617 7 HOH HOH . H 5 HOH B 18 618 20 HOH HOH . H 5 HOH B 19 619 272 HOH HOH . H 5 HOH B 20 620 147 HOH HOH . H 5 HOH B 21 621 194 HOH HOH . H 5 HOH B 22 622 138 HOH HOH . H 5 HOH B 23 623 247 HOH HOH . H 5 HOH B 24 624 128 HOH HOH . H 5 HOH B 25 625 34 HOH HOH . H 5 HOH B 26 626 71 HOH HOH . H 5 HOH B 27 627 227 HOH HOH . H 5 HOH B 28 628 101 HOH HOH . H 5 HOH B 29 629 181 HOH HOH . H 5 HOH B 30 630 239 HOH HOH . H 5 HOH B 31 631 228 HOH HOH . H 5 HOH B 32 632 16 HOH HOH . H 5 HOH B 33 633 166 HOH HOH . H 5 HOH B 34 634 149 HOH HOH . H 5 HOH B 35 635 107 HOH HOH . H 5 HOH B 36 636 57 HOH HOH . H 5 HOH B 37 637 86 HOH HOH . H 5 HOH B 38 638 127 HOH HOH . H 5 HOH B 39 639 95 HOH HOH . H 5 HOH B 40 640 213 HOH HOH . H 5 HOH B 41 641 53 HOH HOH . H 5 HOH B 42 642 41 HOH HOH . H 5 HOH B 43 643 51 HOH HOH . H 5 HOH B 44 644 43 HOH HOH . H 5 HOH B 45 645 216 HOH HOH . H 5 HOH B 46 646 261 HOH HOH . H 5 HOH B 47 647 184 HOH HOH . H 5 HOH B 48 648 150 HOH HOH . H 5 HOH B 49 649 259 HOH HOH . H 5 HOH B 50 650 144 HOH HOH . H 5 HOH B 51 651 63 HOH HOH . H 5 HOH B 52 652 82 HOH HOH . H 5 HOH B 53 653 268 HOH HOH . H 5 HOH B 54 654 28 HOH HOH . H 5 HOH B 55 655 183 HOH HOH . H 5 HOH B 56 656 186 HOH HOH . H 5 HOH B 57 657 196 HOH HOH . H 5 HOH B 58 658 214 HOH HOH . H 5 HOH B 59 659 19 HOH HOH . H 5 HOH B 60 660 273 HOH HOH . H 5 HOH B 61 661 133 HOH HOH . H 5 HOH B 62 662 132 HOH HOH . H 5 HOH B 63 663 81 HOH HOH . H 5 HOH B 64 664 251 HOH HOH . H 5 HOH B 65 665 24 HOH HOH . H 5 HOH B 66 666 33 HOH HOH . H 5 HOH B 67 667 165 HOH HOH . H 5 HOH B 68 668 152 HOH HOH . H 5 HOH B 69 669 76 HOH HOH . H 5 HOH B 70 670 46 HOH HOH . H 5 HOH B 71 671 270 HOH HOH . H 5 HOH B 72 672 60 HOH HOH . H 5 HOH B 73 673 56 HOH HOH . H 5 HOH B 74 674 62 HOH HOH . H 5 HOH B 75 675 6 HOH HOH . H 5 HOH B 76 676 55 HOH HOH . H 5 HOH B 77 677 162 HOH HOH . H 5 HOH B 78 678 25 HOH HOH . H 5 HOH B 79 679 249 HOH HOH . H 5 HOH B 80 680 258 HOH HOH . H 5 HOH B 81 681 89 HOH HOH . H 5 HOH B 82 682 47 HOH HOH . H 5 HOH B 83 683 164 HOH HOH . H 5 HOH B 84 684 117 HOH HOH . H 5 HOH B 85 685 278 HOH HOH . H 5 HOH B 86 686 223 HOH HOH . H 5 HOH B 87 687 151 HOH HOH . H 5 HOH B 88 688 69 HOH HOH . H 5 HOH B 89 689 209 HOH HOH . H 5 HOH B 90 690 208 HOH HOH . H 5 HOH B 91 691 195 HOH HOH . H 5 HOH B 92 692 156 HOH HOH . H 5 HOH B 93 693 118 HOH HOH . H 5 HOH B 94 694 97 HOH HOH . H 5 HOH B 95 695 167 HOH HOH . H 5 HOH B 96 696 22 HOH HOH . H 5 HOH B 97 697 245 HOH HOH . H 5 HOH B 98 698 66 HOH HOH . H 5 HOH B 99 699 9 HOH HOH . H 5 HOH B 100 700 64 HOH HOH . H 5 HOH B 101 701 274 HOH HOH . H 5 HOH B 102 702 126 HOH HOH . H 5 HOH B 103 703 121 HOH HOH . H 5 HOH B 104 704 135 HOH HOH . H 5 HOH B 105 705 140 HOH HOH . H 5 HOH B 106 706 212 HOH HOH . H 5 HOH B 107 707 159 HOH HOH . H 5 HOH B 108 708 230 HOH HOH . H 5 HOH B 109 709 279 HOH HOH . H 5 HOH B 110 710 225 HOH HOH . H 5 HOH B 111 711 5 HOH HOH . H 5 HOH B 112 712 145 HOH HOH . H 5 HOH B 113 713 160 HOH HOH . H 5 HOH B 114 714 254 HOH HOH . H 5 HOH B 115 715 124 HOH HOH . H 5 HOH B 116 716 253 HOH HOH . H 5 HOH B 117 717 262 HOH HOH . H 5 HOH B 118 718 137 HOH HOH . H 5 HOH B 119 719 231 HOH HOH . H 5 HOH B 120 720 87 HOH HOH . H 5 HOH B 121 721 226 HOH HOH . H 5 HOH B 122 722 108 HOH HOH . I 5 HOH D 1 101 198 HOH HOH . I 5 HOH D 2 102 4 HOH HOH . J 5 HOH X 1 101 18 HOH HOH . J 5 HOH X 2 102 91 HOH HOH . J 5 HOH X 3 103 61 HOH HOH . J 5 HOH X 4 104 32 HOH HOH . J 5 HOH X 5 105 30 HOH HOH . J 5 HOH X 6 106 276 HOH HOH . J 5 HOH X 7 107 188 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x 5.01 _atom_site.Cartn_y -13.917 _atom_site.Cartn_z 12.411 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 47.27 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 501 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 136 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #