data_8Q4B # _model_server_result.job_id EpOhvgvotntwcR1BLIUGIw _model_server_result.datetime_utc '2025-01-10 19:57:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8q4b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":406}' # _entry.id 8Q4B # _exptl.entry_id 8Q4B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.47 _cell.angle_gamma 90 _cell.entry_id 8Q4B _cell.length_a 44.755 _cell.length_b 72.882 _cell.length_c 51.785 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8Q4B _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 G N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 255 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 255 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 290 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 290 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.04 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 284 n n C1 H11 MPD sing 285 n n C1 H12 MPD sing 286 n n C1 H13 MPD sing 287 n n C2 O2 MPD sing 288 n n C2 CM MPD sing 289 n n C2 C3 MPD sing 290 n n O2 HO2 MPD sing 291 n n CM HM1 MPD sing 292 n n CM HM2 MPD sing 293 n n CM HM3 MPD sing 294 n n C3 C4 MPD sing 295 n n C3 H31 MPD sing 296 n n C3 H32 MPD sing 297 n n C4 O4 MPD sing 298 n n C4 C5 MPD sing 299 n n C4 H4 MPD sing 300 n n O4 HO4 MPD sing 301 n n C5 H51 MPD sing 302 n n C5 H52 MPD sing 303 n n C5 H53 MPD sing 304 n n # _atom_sites.entry_id 8Q4B _atom_sites.fract_transf_matrix[1][1] 0.022344 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007463 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013721 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020359 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JCI A 1 401 401 JCI F11 . C 3 MPD A 1 402 402 MPD MPD . D 4 ACT A 1 403 403 ACT ACT . E 4 ACT A 1 404 404 ACT ACT . F 5 DMS A 1 405 405 DMS DMS . G 3 MPD A 1 406 406 MPD MPD . H 5 DMS A 1 407 407 DMS DMS . I 5 DMS A 1 408 408 DMS DMS . J 6 PEG A 1 409 409 PEG PEG . K 7 HOH A 1 501 266 HOH HOH . K 7 HOH A 2 502 229 HOH HOH . K 7 HOH A 3 503 248 HOH HOH . K 7 HOH A 4 504 250 HOH HOH . K 7 HOH A 5 505 136 HOH HOH . K 7 HOH A 6 506 27 HOH HOH . K 7 HOH A 7 507 219 HOH HOH . K 7 HOH A 8 508 131 HOH HOH . K 7 HOH A 9 509 244 HOH HOH . K 7 HOH A 10 510 158 HOH HOH . K 7 HOH A 11 511 96 HOH HOH . K 7 HOH A 12 512 65 HOH HOH . K 7 HOH A 13 513 239 HOH HOH . K 7 HOH A 14 514 212 HOH HOH . K 7 HOH A 15 515 271 HOH HOH . K 7 HOH A 16 516 184 HOH HOH . K 7 HOH A 17 517 206 HOH HOH . K 7 HOH A 18 518 227 HOH HOH . K 7 HOH A 19 519 92 HOH HOH . K 7 HOH A 20 520 201 HOH HOH . K 7 HOH A 21 521 78 HOH HOH . K 7 HOH A 22 522 48 HOH HOH . K 7 HOH A 23 523 210 HOH HOH . K 7 HOH A 24 524 52 HOH HOH . K 7 HOH A 25 525 63 HOH HOH . K 7 HOH A 26 526 17 HOH HOH . K 7 HOH A 27 527 108 HOH HOH . K 7 HOH A 28 528 134 HOH HOH . K 7 HOH A 29 529 213 HOH HOH . K 7 HOH A 30 530 33 HOH HOH . K 7 HOH A 31 531 130 HOH HOH . K 7 HOH A 32 532 98 HOH HOH . K 7 HOH A 33 533 114 HOH HOH . K 7 HOH A 34 534 112 HOH HOH . K 7 HOH A 35 535 107 HOH HOH . K 7 HOH A 36 536 16 HOH HOH . K 7 HOH A 37 537 35 HOH HOH . K 7 HOH A 38 538 90 HOH HOH . K 7 HOH A 39 539 42 HOH HOH . K 7 HOH A 40 540 59 HOH HOH . K 7 HOH A 41 541 196 HOH HOH . K 7 HOH A 42 542 217 HOH HOH . K 7 HOH A 43 543 34 HOH HOH . K 7 HOH A 44 544 72 HOH HOH . K 7 HOH A 45 545 133 HOH HOH . K 7 HOH A 46 546 191 HOH HOH . K 7 HOH A 47 547 3 HOH HOH . K 7 HOH A 48 548 51 HOH HOH . K 7 HOH A 49 549 25 HOH HOH . K 7 HOH A 50 550 19 HOH HOH . K 7 HOH A 51 551 103 HOH HOH . K 7 HOH A 52 552 146 HOH HOH . K 7 HOH A 53 553 50 HOH HOH . K 7 HOH A 54 554 234 HOH HOH . K 7 HOH A 55 555 20 HOH HOH . K 7 HOH A 56 556 175 HOH HOH . K 7 HOH A 57 557 82 HOH HOH . K 7 HOH A 58 558 145 HOH HOH . K 7 HOH A 59 559 129 HOH HOH . K 7 HOH A 60 560 74 HOH HOH . K 7 HOH A 61 561 32 HOH HOH . K 7 HOH A 62 562 138 HOH HOH . K 7 HOH A 63 563 31 HOH HOH . K 7 HOH A 64 564 4 HOH HOH . K 7 HOH A 65 565 139 HOH HOH . K 7 HOH A 66 566 71 HOH HOH . K 7 HOH A 67 567 178 HOH HOH . K 7 HOH A 68 568 167 HOH HOH . K 7 HOH A 69 569 109 HOH HOH . K 7 HOH A 70 570 18 HOH HOH . K 7 HOH A 71 571 11 HOH HOH . K 7 HOH A 72 572 199 HOH HOH . K 7 HOH A 73 573 62 HOH HOH . K 7 HOH A 74 574 24 HOH HOH . K 7 HOH A 75 575 256 HOH HOH . K 7 HOH A 76 576 26 HOH HOH . K 7 HOH A 77 577 235 HOH HOH . K 7 HOH A 78 578 2 HOH HOH . K 7 HOH A 79 579 95 HOH HOH . K 7 HOH A 80 580 93 HOH HOH . K 7 HOH A 81 581 193 HOH HOH . K 7 HOH A 82 582 113 HOH HOH . K 7 HOH A 83 583 44 HOH HOH . K 7 HOH A 84 584 56 HOH HOH . K 7 HOH A 85 585 86 HOH HOH . K 7 HOH A 86 586 87 HOH HOH . K 7 HOH A 87 587 8 HOH HOH . K 7 HOH A 88 588 73 HOH HOH . K 7 HOH A 89 589 207 HOH HOH . K 7 HOH A 90 590 29 HOH HOH . K 7 HOH A 91 591 188 HOH HOH . K 7 HOH A 92 592 97 HOH HOH . K 7 HOH A 93 593 23 HOH HOH . K 7 HOH A 94 594 101 HOH HOH . K 7 HOH A 95 595 21 HOH HOH . K 7 HOH A 96 596 100 HOH HOH . K 7 HOH A 97 597 30 HOH HOH . K 7 HOH A 98 598 263 HOH HOH . K 7 HOH A 99 599 60 HOH HOH . K 7 HOH A 100 600 43 HOH HOH . K 7 HOH A 101 601 205 HOH HOH . K 7 HOH A 102 602 152 HOH HOH . K 7 HOH A 103 603 68 HOH HOH . K 7 HOH A 104 604 79 HOH HOH . K 7 HOH A 105 605 91 HOH HOH . K 7 HOH A 106 606 15 HOH HOH . K 7 HOH A 107 607 9 HOH HOH . K 7 HOH A 108 608 179 HOH HOH . K 7 HOH A 109 609 172 HOH HOH . K 7 HOH A 110 610 84 HOH HOH . K 7 HOH A 111 611 61 HOH HOH . K 7 HOH A 112 612 89 HOH HOH . K 7 HOH A 113 613 118 HOH HOH . K 7 HOH A 114 614 85 HOH HOH . K 7 HOH A 115 615 45 HOH HOH . K 7 HOH A 116 616 28 HOH HOH . K 7 HOH A 117 617 237 HOH HOH . K 7 HOH A 118 618 6 HOH HOH . K 7 HOH A 119 619 110 HOH HOH . K 7 HOH A 120 620 5 HOH HOH . K 7 HOH A 121 621 168 HOH HOH . K 7 HOH A 122 622 12 HOH HOH . K 7 HOH A 123 623 37 HOH HOH . K 7 HOH A 124 624 39 HOH HOH . K 7 HOH A 125 625 83 HOH HOH . K 7 HOH A 126 626 190 HOH HOH . K 7 HOH A 127 627 270 HOH HOH . K 7 HOH A 128 628 81 HOH HOH . K 7 HOH A 129 629 220 HOH HOH . K 7 HOH A 130 630 46 HOH HOH . K 7 HOH A 131 631 10 HOH HOH . K 7 HOH A 132 632 155 HOH HOH . K 7 HOH A 133 633 149 HOH HOH . K 7 HOH A 134 634 22 HOH HOH . K 7 HOH A 135 635 75 HOH HOH . K 7 HOH A 136 636 104 HOH HOH . K 7 HOH A 137 637 13 HOH HOH . K 7 HOH A 138 638 125 HOH HOH . K 7 HOH A 139 639 41 HOH HOH . K 7 HOH A 140 640 127 HOH HOH . K 7 HOH A 141 641 119 HOH HOH . K 7 HOH A 142 642 204 HOH HOH . K 7 HOH A 143 643 182 HOH HOH . K 7 HOH A 144 644 38 HOH HOH . K 7 HOH A 145 645 218 HOH HOH . K 7 HOH A 146 646 70 HOH HOH . K 7 HOH A 147 647 208 HOH HOH . K 7 HOH A 148 648 238 HOH HOH . K 7 HOH A 149 649 225 HOH HOH . K 7 HOH A 150 650 132 HOH HOH . K 7 HOH A 151 651 143 HOH HOH . K 7 HOH A 152 652 156 HOH HOH . K 7 HOH A 153 653 69 HOH HOH . K 7 HOH A 154 654 77 HOH HOH . K 7 HOH A 155 655 252 HOH HOH . K 7 HOH A 156 656 246 HOH HOH . K 7 HOH A 157 657 66 HOH HOH . K 7 HOH A 158 658 64 HOH HOH . K 7 HOH A 159 659 7 HOH HOH . K 7 HOH A 160 660 49 HOH HOH . K 7 HOH A 161 661 269 HOH HOH . K 7 HOH A 162 662 76 HOH HOH . K 7 HOH A 163 663 67 HOH HOH . K 7 HOH A 164 664 123 HOH HOH . K 7 HOH A 165 665 36 HOH HOH . K 7 HOH A 166 666 53 HOH HOH . K 7 HOH A 167 667 57 HOH HOH . K 7 HOH A 168 668 106 HOH HOH . K 7 HOH A 169 669 148 HOH HOH . K 7 HOH A 170 670 47 HOH HOH . K 7 HOH A 171 671 99 HOH HOH . K 7 HOH A 172 672 240 HOH HOH . K 7 HOH A 173 673 187 HOH HOH . K 7 HOH A 174 674 203 HOH HOH . K 7 HOH A 175 675 226 HOH HOH . K 7 HOH A 176 676 121 HOH HOH . K 7 HOH A 177 677 116 HOH HOH . K 7 HOH A 178 678 160 HOH HOH . K 7 HOH A 179 679 181 HOH HOH . K 7 HOH A 180 680 111 HOH HOH . K 7 HOH A 181 681 102 HOH HOH . K 7 HOH A 182 682 120 HOH HOH . K 7 HOH A 183 683 58 HOH HOH . K 7 HOH A 184 684 94 HOH HOH . K 7 HOH A 185 685 128 HOH HOH . K 7 HOH A 186 686 216 HOH HOH . K 7 HOH A 187 687 55 HOH HOH . K 7 HOH A 188 688 126 HOH HOH . K 7 HOH A 189 689 80 HOH HOH . K 7 HOH A 190 690 259 HOH HOH . K 7 HOH A 191 691 140 HOH HOH . K 7 HOH A 192 692 161 HOH HOH . K 7 HOH A 193 693 40 HOH HOH . K 7 HOH A 194 694 173 HOH HOH . K 7 HOH A 195 695 268 HOH HOH . K 7 HOH A 196 696 197 HOH HOH . K 7 HOH A 197 697 150 HOH HOH . K 7 HOH A 198 698 115 HOH HOH . K 7 HOH A 199 699 202 HOH HOH . K 7 HOH A 200 700 124 HOH HOH . K 7 HOH A 201 701 88 HOH HOH . K 7 HOH A 202 702 194 HOH HOH . K 7 HOH A 203 703 231 HOH HOH . K 7 HOH A 204 704 247 HOH HOH . K 7 HOH A 205 705 233 HOH HOH . K 7 HOH A 206 706 192 HOH HOH . K 7 HOH A 207 707 159 HOH HOH . K 7 HOH A 208 708 230 HOH HOH . K 7 HOH A 209 709 255 HOH HOH . K 7 HOH A 210 710 221 HOH HOH . K 7 HOH A 211 711 200 HOH HOH . K 7 HOH A 212 712 122 HOH HOH . K 7 HOH A 213 713 141 HOH HOH . K 7 HOH A 214 714 224 HOH HOH . K 7 HOH A 215 715 171 HOH HOH . K 7 HOH A 216 716 249 HOH HOH . K 7 HOH A 217 717 54 HOH HOH . K 7 HOH A 218 718 245 HOH HOH . K 7 HOH A 219 719 189 HOH HOH . K 7 HOH A 220 720 169 HOH HOH . K 7 HOH A 221 721 228 HOH HOH . K 7 HOH A 222 722 154 HOH HOH . K 7 HOH A 223 723 183 HOH HOH . K 7 HOH A 224 724 142 HOH HOH . K 7 HOH A 225 725 151 HOH HOH . K 7 HOH A 226 726 162 HOH HOH . K 7 HOH A 227 727 264 HOH HOH . K 7 HOH A 228 728 257 HOH HOH . K 7 HOH A 229 729 177 HOH HOH . K 7 HOH A 230 730 223 HOH HOH . K 7 HOH A 231 731 144 HOH HOH . K 7 HOH A 232 732 260 HOH HOH . K 7 HOH A 233 733 163 HOH HOH . K 7 HOH A 234 734 265 HOH HOH . K 7 HOH A 235 735 253 HOH HOH . K 7 HOH A 236 736 170 HOH HOH . K 7 HOH A 237 737 157 HOH HOH . K 7 HOH A 238 738 153 HOH HOH . K 7 HOH A 239 739 186 HOH HOH . K 7 HOH A 240 740 174 HOH HOH . K 7 HOH A 241 741 262 HOH HOH . K 7 HOH A 242 742 267 HOH HOH . K 7 HOH A 243 743 180 HOH HOH . K 7 HOH A 244 744 195 HOH HOH . K 7 HOH A 245 745 165 HOH HOH . K 7 HOH A 246 746 222 HOH HOH . K 7 HOH A 247 747 261 HOH HOH . K 7 HOH A 248 748 185 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . G 3 0.663 13.952 -20.398 0.8 34.55 ? C1 MPD 406 A 1 HETATM 2 C C2 MPD . . . G 3 0.74 13.498 -18.947 0.8 27.59 ? C2 MPD 406 A 1 HETATM 3 O O2 MPD . . . G 3 1.066 12.093 -18.952 0.8 31.56 ? O2 MPD 406 A 1 HETATM 4 C CM MPD . . . G 3 -0.625 13.639 -18.281 0.8 28.94 ? CM MPD 406 A 1 HETATM 5 C C3 MPD . . . G 3 1.814 14.32 -18.227 0.8 34.68 ? C3 MPD 406 A 1 HETATM 6 C C4 MPD . . . G 3 2.558 13.55 -17.139 0.8 26.76 ? C4 MPD 406 A 1 HETATM 7 O O4 MPD . . . G 3 3.336 12.541 -17.741 0.8 20.5 ? O4 MPD 406 A 1 HETATM 8 C C5 MPD . . . G 3 3.472 14.435 -16.298 0.8 27.66 ? C5 MPD 406 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #