data_8Q59 # _model_server_result.job_id oPU2wzZlba016aoYJ_Bcaw _model_server_result.datetime_utc '2024-12-26 10:21:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8q59 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 8Q59 # _exptl.entry_id 8Q59 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.66 _cell.angle_gamma 90 _cell.entry_id 8Q59 _cell.length_a 114.637 _cell.length_b 87.739 _cell.length_c 91.008 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8Q59 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 103 A HIS 83 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc2 A O ALA 199 A ALA 179 1_555 C NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.006 ? metalc ? metalc3 A NE2 HIS 200 A HIS 180 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc4 A O GLY 201 A GLY 181 1_555 C NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? metalc ? metalc5 A ND1 HIS 228 A HIS 208 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc6 A O GLY 229 A GLY 209 1_555 C NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.003 ? metalc ? metalc7 A O SER 231 A SER 211 1_555 C NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? metalc ? metalc8 C NA NA . A NA 301 1_555 E O3 JP9 . A JP9 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc9 D ZN ZN . A ZN 302 1_555 E O1 JP9 . A JP9 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc10 D ZN ZN . A ZN 302 1_555 I O HOH . A HOH 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc11 B NE2 HIS 103 B HIS 83 1_555 G ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc12 B O ALA 199 B ALA 179 1_555 F NA NA . B NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? metalc ? metalc13 B NE2 HIS 200 B HIS 180 1_555 G ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc14 B O GLY 201 B GLY 181 1_555 F NA NA . B NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc15 B ND1 HIS 228 B HIS 208 1_555 G ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? metalc ? metalc16 B O GLY 229 B GLY 209 1_555 F NA NA . B NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.111 ? metalc ? metalc17 B O SER 231 B SER 211 1_555 F NA NA . B NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.996 ? metalc ? metalc18 F NA NA . B NA 301 1_555 H O3 JP9 . B JP9 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc19 G ZN ZN . B ZN 302 1_555 H O1 JP9 . B JP9 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc20 G ZN ZN . B ZN 302 1_555 J O HOH . B HOH 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.926 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8Q59 _atom_sites.fract_transf_matrix[1][1] 0.008723 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003289 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011397 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011743 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 301 3 NA NA . D 3 ZN A 1 302 1 ZN ZN . E 4 JP9 A 1 303 301 JP9 SFP . F 2 NA B 1 301 4 NA NA . G 3 ZN B 1 302 2 ZN ZN . H 4 JP9 B 1 303 302 JP9 SFP . I 5 HOH A 1 401 201 HOH HOH . I 5 HOH A 2 402 202 HOH HOH . I 5 HOH A 3 403 28 HOH HOH . I 5 HOH A 4 404 215 HOH HOH . I 5 HOH A 5 405 100 HOH HOH . I 5 HOH A 6 406 162 HOH HOH . I 5 HOH A 7 407 198 HOH HOH . I 5 HOH A 8 408 175 HOH HOH . I 5 HOH A 9 409 118 HOH HOH . I 5 HOH A 10 410 87 HOH HOH . I 5 HOH A 11 411 117 HOH HOH . I 5 HOH A 12 412 111 HOH HOH . I 5 HOH A 13 413 153 HOH HOH . I 5 HOH A 14 414 66 HOH HOH . I 5 HOH A 15 415 77 HOH HOH . I 5 HOH A 16 416 75 HOH HOH . I 5 HOH A 17 417 123 HOH HOH . I 5 HOH A 18 418 158 HOH HOH . I 5 HOH A 19 419 103 HOH HOH . I 5 HOH A 20 420 57 HOH HOH . I 5 HOH A 21 421 34 HOH HOH . I 5 HOH A 22 422 42 HOH HOH . I 5 HOH A 23 423 80 HOH HOH . I 5 HOH A 24 424 128 HOH HOH . I 5 HOH A 25 425 47 HOH HOH . I 5 HOH A 26 426 214 HOH HOH . I 5 HOH A 27 427 11 HOH HOH . I 5 HOH A 28 428 65 HOH HOH . I 5 HOH A 29 429 171 HOH HOH . I 5 HOH A 30 430 58 HOH HOH . I 5 HOH A 31 431 21 HOH HOH . I 5 HOH A 32 432 13 HOH HOH . I 5 HOH A 33 433 9 HOH HOH . I 5 HOH A 34 434 150 HOH HOH . I 5 HOH A 35 435 188 HOH HOH . I 5 HOH A 36 436 12 HOH HOH . I 5 HOH A 37 437 38 HOH HOH . I 5 HOH A 38 438 95 HOH HOH . I 5 HOH A 39 439 15 HOH HOH . I 5 HOH A 40 440 91 HOH HOH . I 5 HOH A 41 441 136 HOH HOH . I 5 HOH A 42 442 143 HOH HOH . I 5 HOH A 43 443 205 HOH HOH . I 5 HOH A 44 444 48 HOH HOH . I 5 HOH A 45 445 86 HOH HOH . I 5 HOH A 46 446 199 HOH HOH . I 5 HOH A 47 447 177 HOH HOH . I 5 HOH A 48 448 59 HOH HOH . I 5 HOH A 49 449 88 HOH HOH . I 5 HOH A 50 450 54 HOH HOH . I 5 HOH A 51 451 18 HOH HOH . I 5 HOH A 52 452 130 HOH HOH . I 5 HOH A 53 453 119 HOH HOH . I 5 HOH A 54 454 73 HOH HOH . I 5 HOH A 55 455 20 HOH HOH . I 5 HOH A 56 456 53 HOH HOH . I 5 HOH A 57 457 55 HOH HOH . I 5 HOH A 58 458 183 HOH HOH . I 5 HOH A 59 459 152 HOH HOH . I 5 HOH A 60 460 97 HOH HOH . I 5 HOH A 61 461 102 HOH HOH . I 5 HOH A 62 462 46 HOH HOH . I 5 HOH A 63 463 125 HOH HOH . I 5 HOH A 64 464 1 HOH HOH . I 5 HOH A 65 465 170 HOH HOH . I 5 HOH A 66 466 26 HOH HOH . I 5 HOH A 67 467 64 HOH HOH . I 5 HOH A 68 468 112 HOH HOH . I 5 HOH A 69 469 94 HOH HOH . I 5 HOH A 70 470 39 HOH HOH . I 5 HOH A 71 471 4 HOH HOH . I 5 HOH A 72 472 29 HOH HOH . I 5 HOH A 73 473 147 HOH HOH . I 5 HOH A 74 474 35 HOH HOH . I 5 HOH A 75 475 40 HOH HOH . I 5 HOH A 76 476 44 HOH HOH . I 5 HOH A 77 477 182 HOH HOH . I 5 HOH A 78 478 115 HOH HOH . I 5 HOH A 79 479 132 HOH HOH . I 5 HOH A 80 480 159 HOH HOH . I 5 HOH A 81 481 6 HOH HOH . I 5 HOH A 82 482 93 HOH HOH . I 5 HOH A 83 483 50 HOH HOH . I 5 HOH A 84 484 63 HOH HOH . I 5 HOH A 85 485 96 HOH HOH . I 5 HOH A 86 486 138 HOH HOH . I 5 HOH A 87 487 79 HOH HOH . I 5 HOH A 88 488 49 HOH HOH . I 5 HOH A 89 489 185 HOH HOH . I 5 HOH A 90 490 176 HOH HOH . I 5 HOH A 91 491 163 HOH HOH . I 5 HOH A 92 492 204 HOH HOH . I 5 HOH A 93 493 90 HOH HOH . I 5 HOH A 94 494 190 HOH HOH . I 5 HOH A 95 495 218 HOH HOH . I 5 HOH A 96 496 211 HOH HOH . I 5 HOH A 97 497 206 HOH HOH . I 5 HOH A 98 498 181 HOH HOH . I 5 HOH A 99 499 135 HOH HOH . I 5 HOH A 100 500 189 HOH HOH . I 5 HOH A 101 501 137 HOH HOH . I 5 HOH A 102 502 76 HOH HOH . I 5 HOH A 103 503 168 HOH HOH . I 5 HOH A 104 504 36 HOH HOH . I 5 HOH A 105 505 169 HOH HOH . I 5 HOH A 106 506 213 HOH HOH . I 5 HOH A 107 507 180 HOH HOH . I 5 HOH A 108 508 194 HOH HOH . I 5 HOH A 109 509 191 HOH HOH . I 5 HOH A 110 510 155 HOH HOH . I 5 HOH A 111 511 164 HOH HOH . I 5 HOH A 112 512 43 HOH HOH . I 5 HOH A 113 513 78 HOH HOH . I 5 HOH A 114 514 192 HOH HOH . I 5 HOH A 115 515 165 HOH HOH . I 5 HOH A 116 516 151 HOH HOH . I 5 HOH A 117 517 37 HOH HOH . J 5 HOH B 1 401 210 HOH HOH . J 5 HOH B 2 402 208 HOH HOH . J 5 HOH B 3 403 187 HOH HOH . J 5 HOH B 4 404 196 HOH HOH . J 5 HOH B 5 405 156 HOH HOH . J 5 HOH B 6 406 221 HOH HOH . J 5 HOH B 7 407 74 HOH HOH . J 5 HOH B 8 408 16 HOH HOH . J 5 HOH B 9 409 109 HOH HOH . J 5 HOH B 10 410 104 HOH HOH . J 5 HOH B 11 411 85 HOH HOH . J 5 HOH B 12 412 24 HOH HOH . J 5 HOH B 13 413 186 HOH HOH . J 5 HOH B 14 414 83 HOH HOH . J 5 HOH B 15 415 173 HOH HOH . J 5 HOH B 16 416 172 HOH HOH . J 5 HOH B 17 417 126 HOH HOH . J 5 HOH B 18 418 134 HOH HOH . J 5 HOH B 19 419 89 HOH HOH . J 5 HOH B 20 420 27 HOH HOH . J 5 HOH B 21 421 127 HOH HOH . J 5 HOH B 22 422 99 HOH HOH . J 5 HOH B 23 423 82 HOH HOH . J 5 HOH B 24 424 223 HOH HOH . J 5 HOH B 25 425 10 HOH HOH . J 5 HOH B 26 426 25 HOH HOH . J 5 HOH B 27 427 32 HOH HOH . J 5 HOH B 28 428 209 HOH HOH . J 5 HOH B 29 429 52 HOH HOH . J 5 HOH B 30 430 51 HOH HOH . J 5 HOH B 31 431 142 HOH HOH . J 5 HOH B 32 432 8 HOH HOH . J 5 HOH B 33 433 72 HOH HOH . J 5 HOH B 34 434 92 HOH HOH . J 5 HOH B 35 435 141 HOH HOH . J 5 HOH B 36 436 154 HOH HOH . J 5 HOH B 37 437 56 HOH HOH . J 5 HOH B 38 438 222 HOH HOH . J 5 HOH B 39 439 101 HOH HOH . J 5 HOH B 40 440 203 HOH HOH . J 5 HOH B 41 441 3 HOH HOH . J 5 HOH B 42 442 131 HOH HOH . J 5 HOH B 43 443 70 HOH HOH . J 5 HOH B 44 444 124 HOH HOH . J 5 HOH B 45 445 110 HOH HOH . J 5 HOH B 46 446 61 HOH HOH . J 5 HOH B 47 447 84 HOH HOH . J 5 HOH B 48 448 116 HOH HOH . J 5 HOH B 49 449 114 HOH HOH . J 5 HOH B 50 450 60 HOH HOH . J 5 HOH B 51 451 174 HOH HOH . J 5 HOH B 52 452 217 HOH HOH . J 5 HOH B 53 453 23 HOH HOH . J 5 HOH B 54 454 107 HOH HOH . J 5 HOH B 55 455 105 HOH HOH . J 5 HOH B 56 456 120 HOH HOH . J 5 HOH B 57 457 106 HOH HOH . J 5 HOH B 58 458 41 HOH HOH . J 5 HOH B 59 459 139 HOH HOH . J 5 HOH B 60 460 98 HOH HOH . J 5 HOH B 61 461 81 HOH HOH . J 5 HOH B 62 462 7 HOH HOH . J 5 HOH B 63 463 157 HOH HOH . J 5 HOH B 64 464 197 HOH HOH . J 5 HOH B 65 465 148 HOH HOH . J 5 HOH B 66 466 133 HOH HOH . J 5 HOH B 67 467 69 HOH HOH . J 5 HOH B 68 468 149 HOH HOH . J 5 HOH B 69 469 145 HOH HOH . J 5 HOH B 70 470 144 HOH HOH . J 5 HOH B 71 471 19 HOH HOH . J 5 HOH B 72 472 140 HOH HOH . J 5 HOH B 73 473 62 HOH HOH . J 5 HOH B 74 474 212 HOH HOH . J 5 HOH B 75 475 68 HOH HOH . J 5 HOH B 76 476 17 HOH HOH . J 5 HOH B 77 477 2 HOH HOH . J 5 HOH B 78 478 219 HOH HOH . J 5 HOH B 79 479 122 HOH HOH . J 5 HOH B 80 480 121 HOH HOH . J 5 HOH B 81 481 184 HOH HOH . J 5 HOH B 82 482 113 HOH HOH . J 5 HOH B 83 483 207 HOH HOH . J 5 HOH B 84 484 167 HOH HOH . J 5 HOH B 85 485 200 HOH HOH . J 5 HOH B 86 486 195 HOH HOH . J 5 HOH B 87 487 179 HOH HOH . J 5 HOH B 88 488 160 HOH HOH . J 5 HOH B 89 489 166 HOH HOH . J 5 HOH B 90 490 129 HOH HOH . J 5 HOH B 91 491 178 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -7.475 _atom_site.Cartn_y -56.72 _atom_site.Cartn_z 20.802 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 50.78 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #