data_8Q5N # _model_server_result.job_id '_BLqcJNLtBLMhizJlq0IiA' _model_server_result.datetime_utc '2025-01-15 14:08:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8q5n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 8Q5N # _exptl.entry_id 8Q5N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.23 _cell.angle_gamma 90 _cell.entry_id 8Q5N _cell.length_a 38.48 _cell.length_b 58.76 _cell.length_c 75.59 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8Q5N _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 72 A ASP 70 1_555 E CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc2 A OE1 GLN 82 A GLN 80 1_555 E CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc3 A O VAL 83 A VAL 81 1_555 E CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc4 E CA CA . A CA 203 1_555 I O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.108 ? metalc ? metalc5 E CA CA . A CA 203 1_555 I O HOH . A HOH 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.16 ? metalc ? metalc6 E CA CA . A CA 203 1_555 I O HOH . A HOH 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.988 ? metalc ? metalc7 B OD2 ASP 72 B ASP 70 1_555 H CA CA . B CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc8 B OE1 GLN 82 B GLN 80 1_555 H CA CA . B CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc9 B O VAL 83 B VAL 81 1_555 H CA CA . B CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc10 H CA CA . B CA 203 1_555 J O HOH . B HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.024 ? metalc ? metalc11 H CA CA . B CA 203 1_555 J O HOH . B HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.751 ? metalc ? metalc12 H CA CA . B CA 203 1_555 J O HOH . B HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.844 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 8Q5N _atom_sites.fract_transf_matrix[1][1] 0.025988 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003297 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017018 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013335 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 201 201 EDO EDO . D 2 EDO A 1 202 401 EDO EDO . E 3 CA A 1 203 3 CA CA . F 2 EDO B 1 201 201 EDO EDO . G 2 EDO B 1 202 501 EDO EDO . H 3 CA B 1 203 2 CA CA . I 4 HOH A 1 301 170 HOH HOH . I 4 HOH A 2 302 168 HOH HOH . I 4 HOH A 3 303 80 HOH HOH . I 4 HOH A 4 304 15 HOH HOH . I 4 HOH A 5 305 98 HOH HOH . I 4 HOH A 6 306 5 HOH HOH . I 4 HOH A 7 307 63 HOH HOH . I 4 HOH A 8 308 128 HOH HOH . I 4 HOH A 9 309 60 HOH HOH . I 4 HOH A 10 310 164 HOH HOH . I 4 HOH A 11 311 93 HOH HOH . I 4 HOH A 12 312 166 HOH HOH . I 4 HOH A 13 313 123 HOH HOH . I 4 HOH A 14 314 86 HOH HOH . I 4 HOH A 15 315 142 HOH HOH . I 4 HOH A 16 316 47 HOH HOH . I 4 HOH A 17 317 19 HOH HOH . I 4 HOH A 18 318 106 HOH HOH . I 4 HOH A 19 319 144 HOH HOH . I 4 HOH A 20 320 132 HOH HOH . I 4 HOH A 21 321 92 HOH HOH . I 4 HOH A 22 322 101 HOH HOH . I 4 HOH A 23 323 102 HOH HOH . I 4 HOH A 24 324 151 HOH HOH . I 4 HOH A 25 325 23 HOH HOH . I 4 HOH A 26 326 141 HOH HOH . I 4 HOH A 27 327 96 HOH HOH . I 4 HOH A 28 328 65 HOH HOH . I 4 HOH A 29 329 100 HOH HOH . I 4 HOH A 30 330 111 HOH HOH . I 4 HOH A 31 331 125 HOH HOH . I 4 HOH A 32 332 163 HOH HOH . J 4 HOH B 1 301 105 HOH HOH . J 4 HOH B 2 302 56 HOH HOH . J 4 HOH B 3 303 112 HOH HOH . J 4 HOH B 4 304 81 HOH HOH . J 4 HOH B 5 305 114 HOH HOH . J 4 HOH B 6 306 94 HOH HOH . J 4 HOH B 7 307 119 HOH HOH . J 4 HOH B 8 308 107 HOH HOH . J 4 HOH B 9 309 137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 2 -14.352 10.118 11.113 1 59.78 ? C1 EDO 201 A 1 HETATM 2 O O1 EDO . . . C 2 -12.952 10.27 11.372 1 56.04 ? O1 EDO 201 A 1 HETATM 3 C C2 EDO . . . C 2 -14.764 11.026 9.956 1 61.68 ? C2 EDO 201 A 1 HETATM 4 O O2 EDO . . . C 2 -15.487 10.268 8.975 1 53.93 ? O2 EDO 201 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 744 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #