data_8Q5O # _model_server_result.job_id YjBSdurfzB3R5Y8njw1dPQ _model_server_result.datetime_utc '2024-12-27 03:46:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8q5o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 8Q5O # _exptl.entry_id 8Q5O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8Q5O _cell.length_a 95.995 _cell.length_b 95.995 _cell.length_c 96.307 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8Q5O _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O3' DG 3 C DG 3 1_555 C P 5CM 4 C 5CM 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.603 ? covale ? covale2 C O3' 5CM 4 C 5CM 4 1_555 C P DT 5 C DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.602 ? covale ? covale3 C O3' DG 6 C DG 6 1_555 C P 5CM 7 C 5CM 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.605 ? covale ? covale4 C O3' 5CM 7 C 5CM 7 1_555 C P DT 8 C DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.603 ? covale ? covale5 D O3' DG 3 D DG 3 1_555 D P 5CM 4 D 5CM 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.602 ? covale ? covale6 D O3' 5CM 4 D 5CM 4 1_555 D P DA 5 D DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.603 ? covale ? covale7 D O3' DG 6 D DG 6 1_555 D P 5CM 7 D 5CM 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.606 ? covale ? covale8 D O3' 5CM 7 D 5CM 7 1_555 D P DA 8 D DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.605 ? metalc ? metalc1 A OD2 ASP 64 A ASP 69 1_555 E CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc2 A OE1 GLN 74 A GLN 79 1_555 E CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? metalc ? metalc3 E CA CA . A CA 201 1_555 G O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc4 E CA CA . A CA 201 1_555 D OP1 DA 5 D DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc5 E CA CA . A CA 201 1_555 J O HOH . D HOH 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? metalc ? metalc6 B OD2 ASP 64 B ASP 69 1_555 F CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc7 B OE1 GLN 74 B GLN 79 1_555 F CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc8 B O ILE 75 B ILE 80 1_555 F CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc9 F CA CA . B CA 201 1_555 C OP1 DT 5 C DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc10 F CA CA . B CA 201 1_555 I O HOH . C HOH 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc11 F CA CA . B CA 201 1_555 I O HOH . C HOH 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.773 ? hydrog WATSON-CRICK hydrog1 C N3 DC 1 C DC 1 1_555 D N1 DG 9 D DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 C N4 DC 1 C DC 1 1_555 D O6 DG 9 D DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 C O2 DC 1 C DC 1 1_555 D N2 DG 9 D DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 C N3 DT 2 C DT 2 1_555 D N1 DA 8 D DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 C O4 DT 2 C DT 2 1_555 D N6 DA 8 D DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 C N1 DG 3 C DG 3 1_555 D N3 5CM 7 D 5CM 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 C N2 DG 3 C DG 3 1_555 D O2 5CM 7 D 5CM 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 C O6 DG 3 C DG 3 1_555 D N4 5CM 7 D 5CM 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 C N3 5CM 4 C 5CM 4 1_555 D N1 DG 6 D DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 C N4 5CM 4 C 5CM 4 1_555 D O6 DG 6 D DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 C O2 5CM 4 C 5CM 4 1_555 D N2 DG 6 D DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 C N3 DT 5 C DT 5 1_555 D N1 DA 5 D DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 C O4 DT 5 C DT 5 1_555 D N6 DA 5 D DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 C N1 DG 6 C DG 6 1_555 D N3 5CM 4 D 5CM 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 C N2 DG 6 C DG 6 1_555 D O2 5CM 4 D 5CM 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 C O6 DG 6 C DG 6 1_555 D N4 5CM 4 D 5CM 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 C N3 5CM 7 C 5CM 7 1_555 D N1 DG 3 D DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 C N4 5CM 7 C 5CM 7 1_555 D O6 DG 3 D DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 C O2 5CM 7 C 5CM 7 1_555 D N2 DG 3 D DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 C N3 DT 8 C DT 8 1_555 D N1 DA 2 D DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 C O4 DT 8 C DT 8 1_555 D N6 DA 2 D DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 C N3 DC 9 C DC 9 1_555 D N1 DG 1 D DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 C N4 DC 9 C DC 9 1_555 D O6 DG 1 D DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 C O2 DC 9 C DC 9 1_555 D N2 DG 1 D DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8Q5O _atom_sites.fract_transf_matrix[1][1] 0.010417 _atom_sites.fract_transf_matrix[1][2] 0.006014 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012029 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010383 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 CA A 1 201 2 CA CA . F 4 CA B 1 201 3 CA CA . G 5 HOH A 1 301 25 HOH HOH . G 5 HOH A 2 302 63 HOH HOH . G 5 HOH A 3 303 60 HOH HOH . G 5 HOH A 4 304 55 HOH HOH . G 5 HOH A 5 305 46 HOH HOH . G 5 HOH A 6 306 56 HOH HOH . G 5 HOH A 7 307 64 HOH HOH . G 5 HOH A 8 308 66 HOH HOH . G 5 HOH A 9 309 24 HOH HOH . G 5 HOH A 10 310 54 HOH HOH . G 5 HOH A 11 311 36 HOH HOH . G 5 HOH A 12 312 8 HOH HOH . H 5 HOH B 1 301 14 HOH HOH . H 5 HOH B 2 302 33 HOH HOH . H 5 HOH B 3 303 32 HOH HOH . H 5 HOH B 4 304 3 HOH HOH . H 5 HOH B 5 305 26 HOH HOH . H 5 HOH B 6 306 62 HOH HOH . H 5 HOH B 7 307 21 HOH HOH . H 5 HOH B 8 308 43 HOH HOH . I 5 HOH C 1 101 59 HOH HOH . I 5 HOH C 2 102 58 HOH HOH . J 5 HOH D 1 101 61 HOH HOH . J 5 HOH D 2 102 44 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x -42.158 _atom_site.Cartn_y 14.494 _atom_site.Cartn_z -1.154 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 134.34 _atom_site.pdbx_formal_charge 0 _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 81 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #