data_8Q5R
#
_model_server_result.job_id            ZnnklWrakbd8w0CFexo6kQ 
_model_server_result.datetime_utc      '2024-11-14 19:46:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8q5r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":303}' 
#
_entry.id    8Q5R 
#
_exptl.entry_id    8Q5R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.07 
_cell.angle_gamma         90 
_cell.entry_id            8Q5R 
_cell.length_a            149.779 
_cell.length_b            35.755 
_cell.length_c            61.289 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8Q5R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 65 B CYS 65 1_555 B SG CYS 135 B CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf2 B SG CYS 121 B CYS 121 1_555 B SG CYS 147 B CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf3 B SG CYS 151 B CYS 151 1_555 B SG CYS 222 B CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf4 B SG CYS 205 B CYS 205 1_555 B SG CYS 234 B CYS 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     8Q5R 
_atom_sites.fract_transf_matrix[1][1]    0.006677 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000242 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.027968 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016327 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 EDO A 1 301 301 EDO EDO . 
D 4 CL A 1 302 1 CL CL . 
E 3 EDO A 1 303 301 EDO EDO . 
F 5 HOH A 1 401 122 HOH HOH . 
F 5 HOH A 2 402 35 HOH HOH . 
F 5 HOH A 3 403 10 HOH HOH . 
F 5 HOH A 4 404 62 HOH HOH . 
F 5 HOH A 5 405 9 HOH HOH . 
F 5 HOH A 6 406 49 HOH HOH . 
F 5 HOH A 7 407 74 HOH HOH . 
F 5 HOH A 8 408 42 HOH HOH . 
F 5 HOH A 9 409 1 HOH HOH . 
F 5 HOH A 10 410 126 HOH HOH . 
F 5 HOH A 11 411 15 HOH HOH . 
F 5 HOH A 12 412 3 HOH HOH . 
F 5 HOH A 13 413 71 HOH HOH . 
F 5 HOH A 14 414 65 HOH HOH . 
F 5 HOH A 15 415 72 HOH HOH . 
F 5 HOH A 16 416 5 HOH HOH . 
F 5 HOH A 17 417 7 HOH HOH . 
F 5 HOH A 18 418 19 HOH HOH . 
F 5 HOH A 19 419 12 HOH HOH . 
F 5 HOH A 20 420 31 HOH HOH . 
F 5 HOH A 21 421 16 HOH HOH . 
F 5 HOH A 22 422 36 HOH HOH . 
F 5 HOH A 23 423 29 HOH HOH . 
F 5 HOH A 24 424 67 HOH HOH . 
F 5 HOH A 25 425 21 HOH HOH . 
F 5 HOH A 26 426 88 HOH HOH . 
F 5 HOH A 27 427 30 HOH HOH . 
F 5 HOH A 28 428 38 HOH HOH . 
F 5 HOH A 29 429 37 HOH HOH . 
F 5 HOH A 30 430 130 HOH HOH . 
F 5 HOH A 31 431 6 HOH HOH . 
F 5 HOH A 32 432 55 HOH HOH . 
F 5 HOH A 33 433 75 HOH HOH . 
F 5 HOH A 34 434 51 HOH HOH . 
F 5 HOH A 35 435 41 HOH HOH . 
F 5 HOH A 36 436 46 HOH HOH . 
F 5 HOH A 37 437 76 HOH HOH . 
F 5 HOH A 38 438 69 HOH HOH . 
F 5 HOH A 39 439 34 HOH HOH . 
F 5 HOH A 40 440 103 HOH HOH . 
F 5 HOH A 41 441 54 HOH HOH . 
F 5 HOH A 42 442 110 HOH HOH . 
F 5 HOH A 43 443 25 HOH HOH . 
F 5 HOH A 44 444 112 HOH HOH . 
F 5 HOH A 45 445 107 HOH HOH . 
F 5 HOH A 46 446 86 HOH HOH . 
F 5 HOH A 47 447 98 HOH HOH . 
F 5 HOH A 48 448 105 HOH HOH . 
F 5 HOH A 49 449 127 HOH HOH . 
F 5 HOH A 50 450 90 HOH HOH . 
F 5 HOH A 51 451 63 HOH HOH . 
G 5 HOH B 1 301 66 HOH HOH . 
G 5 HOH B 2 302 24 HOH HOH . 
G 5 HOH B 3 303 26 HOH HOH . 
G 5 HOH B 4 304 57 HOH HOH . 
G 5 HOH B 5 305 100 HOH HOH . 
G 5 HOH B 6 306 97 HOH HOH . 
G 5 HOH B 7 307 22 HOH HOH . 
G 5 HOH B 8 308 23 HOH HOH . 
G 5 HOH B 9 309 133 HOH HOH . 
G 5 HOH B 10 310 94 HOH HOH . 
G 5 HOH B 11 311 4 HOH HOH . 
G 5 HOH B 12 312 70 HOH HOH . 
G 5 HOH B 13 313 102 HOH HOH . 
G 5 HOH B 14 314 20 HOH HOH . 
G 5 HOH B 15 315 73 HOH HOH . 
G 5 HOH B 16 316 8 HOH HOH . 
G 5 HOH B 17 317 11 HOH HOH . 
G 5 HOH B 18 318 2 HOH HOH . 
G 5 HOH B 19 319 32 HOH HOH . 
G 5 HOH B 20 320 140 HOH HOH . 
G 5 HOH B 21 321 28 HOH HOH . 
G 5 HOH B 22 322 47 HOH HOH . 
G 5 HOH B 23 323 14 HOH HOH . 
G 5 HOH B 24 324 13 HOH HOH . 
G 5 HOH B 25 325 59 HOH HOH . 
G 5 HOH B 26 326 39 HOH HOH . 
G 5 HOH B 27 327 95 HOH HOH . 
G 5 HOH B 28 328 85 HOH HOH . 
G 5 HOH B 29 329 92 HOH HOH . 
G 5 HOH B 30 330 80 HOH HOH . 
G 5 HOH B 31 331 33 HOH HOH . 
G 5 HOH B 32 332 27 HOH HOH . 
G 5 HOH B 33 333 50 HOH HOH . 
G 5 HOH B 34 334 82 HOH HOH . 
G 5 HOH B 35 335 45 HOH HOH . 
G 5 HOH B 36 336 87 HOH HOH . 
G 5 HOH B 37 337 79 HOH HOH . 
G 5 HOH B 38 338 17 HOH HOH . 
G 5 HOH B 39 339 96 HOH HOH . 
G 5 HOH B 40 340 142 HOH HOH . 
G 5 HOH B 41 341 68 HOH HOH . 
G 5 HOH B 42 342 109 HOH HOH . 
G 5 HOH B 43 343 18 HOH HOH . 
G 5 HOH B 44 344 99 HOH HOH . 
G 5 HOH B 45 345 61 HOH HOH . 
G 5 HOH B 46 346 104 HOH HOH . 
G 5 HOH B 47 347 117 HOH HOH . 
G 5 HOH B 48 348 135 HOH HOH . 
G 5 HOH B 49 349 137 HOH HOH . 
G 5 HOH B 50 350 121 HOH HOH . 
G 5 HOH B 51 351 115 HOH HOH . 
G 5 HOH B 52 352 48 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . E 3 31.996 -11.318 -8.791 1 94.59 ? C1 EDO 303 A 1 
HETATM 2 O O1 EDO . . . E 3 32.164 -11.275 -10.213 1 94.9 ? O1 EDO 303 A 1 
HETATM 3 C C2 EDO . . . E 3 32.816 -10.209 -8.141 1 94.15 ? C2 EDO 303 A 1 
HETATM 4 O O2 EDO . . . E 3 32.457 -8.948 -8.716 1 86.49 ? O2 EDO 303 A 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           32 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           4 
#