data_8Q6A # _model_server_result.job_id LKfPGxw_mKyeexQjDHAzDw _model_server_result.datetime_utc '2024-11-22 20:43:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8q6a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":103}' # _entry.id 8Q6A # _exptl.entry_id 8Q6A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8Q6A _cell.length_a 94.402 _cell.length_b 94.402 _cell.length_c 94.402 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8Q6A _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall 'I 2b 2c 3' _symmetry.space_group_name_H-M 'I 21 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 1 2 A,B,C,D,E 1 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 305 n n C1 C2 GOL sing 306 n n C1 H11 GOL sing 307 n n C1 H12 GOL sing 308 n n O1 HO1 GOL sing 309 n n C2 O2 GOL sing 310 n n C2 C3 GOL sing 311 n n C2 H2 GOL sing 312 n n O2 HO2 GOL sing 313 n n C3 O3 GOL sing 314 n n C3 H31 GOL sing 315 n n C3 H32 GOL sing 316 n n O3 HO3 GOL sing 317 n n # _atom_sites.entry_id 8Q6A _atom_sites.fract_transf_matrix[1][1] 0.010593 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010593 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010593 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BDF A 1 101 101 BDF BDF . C 3 EVB A 1 102 102 EVB EVB . D 4 GOL A 1 103 103 GOL GOL . E 5 HOH A 1 201 4 HOH HOH . E 5 HOH A 2 202 3 HOH HOH . E 5 HOH A 3 203 5 HOH HOH . E 5 HOH A 4 204 6 HOH HOH . E 5 HOH A 5 205 8 HOH HOH . E 5 HOH A 6 206 2 HOH HOH . E 5 HOH A 7 207 1 HOH HOH . E 5 HOH A 8 208 9 HOH HOH . E 5 HOH A 9 209 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 3.497 14.128 -9.538 1 71.82 ? C1 GOL 103 A 1 HETATM 2 O O1 GOL . . . D 4 2.524 14.712 -8.713 1 63.5 ? O1 GOL 103 A 1 HETATM 3 C C2 GOL . . . D 4 2.835 12.904 -10.214 1 68.31 ? C2 GOL 103 A 1 HETATM 4 O O2 GOL . . . D 4 1.944 12.263 -9.359 1 65.99 ? O2 GOL 103 A 1 HETATM 5 C C3 GOL . . . D 4 2.137 13.48 -11.477 1 65.76 ? C3 GOL 103 A 1 HETATM 6 O O3 GOL . . . D 4 1.761 12.384 -12.257 1 62.79 ? O3 GOL 103 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #