data_8Q6B # _model_server_result.job_id AC1JuIR9d9imVEUcX2dsjw _model_server_result.datetime_utc '2024-11-14 07:11:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8q6b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":107}' # _entry.id 8Q6B # _exptl.entry_id 8Q6B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8Q6B _cell.length_a 112.16 _cell.length_b 112.16 _cell.length_c 112.16 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8Q6B _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall 'I 2 2 3' _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 305 n n C1 C2 GOL sing 306 n n C1 H11 GOL sing 307 n n C1 H12 GOL sing 308 n n O1 HO1 GOL sing 309 n n C2 O2 GOL sing 310 n n C2 C3 GOL sing 311 n n C2 H2 GOL sing 312 n n O2 HO2 GOL sing 313 n n C3 O3 GOL sing 314 n n C3 H31 GOL sing 315 n n C3 H32 GOL sing 316 n n O3 HO3 GOL sing 317 n n # _atom_sites.entry_id 8Q6B _atom_sites.fract_transf_matrix[1][1] 0.008916 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008916 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008916 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EVB A 1 101 101 EVB EVB . C 3 BDF A 1 102 301 BDF BDF . D 2 EVB A 1 103 302 EVB EVB . E 2 EVB A 1 104 303 EVB EVB . F 4 GOL A 1 105 305 GOL GOL . G 3 BDF A 1 106 306 BDF BDF . H 4 GOL A 1 107 307 GOL GOL . I 5 HOH A 1 201 156 HOH HOH . I 5 HOH A 2 202 57 HOH HOH . I 5 HOH A 3 203 50 HOH HOH . I 5 HOH A 4 204 46 HOH HOH . I 5 HOH A 5 205 12 HOH HOH . I 5 HOH A 6 206 65 HOH HOH . I 5 HOH A 7 207 38 HOH HOH . I 5 HOH A 8 208 26 HOH HOH . I 5 HOH A 9 209 7 HOH HOH . I 5 HOH A 10 210 20 HOH HOH . I 5 HOH A 11 211 4 HOH HOH . I 5 HOH A 12 212 54 HOH HOH . I 5 HOH A 13 213 2 HOH HOH . I 5 HOH A 14 214 13 HOH HOH . I 5 HOH A 15 215 23 HOH HOH . I 5 HOH A 16 216 16 HOH HOH . I 5 HOH A 17 217 10 HOH HOH . I 5 HOH A 18 218 14 HOH HOH . I 5 HOH A 19 219 195 HOH HOH . I 5 HOH A 20 220 51 HOH HOH . I 5 HOH A 21 221 1 HOH HOH . I 5 HOH A 22 222 29 HOH HOH . I 5 HOH A 23 223 6 HOH HOH . I 5 HOH A 24 224 40 HOH HOH . I 5 HOH A 25 225 56 HOH HOH . I 5 HOH A 26 226 15 HOH HOH . I 5 HOH A 27 227 53 HOH HOH . I 5 HOH A 28 228 36 HOH HOH . I 5 HOH A 29 229 25 HOH HOH . I 5 HOH A 30 230 24 HOH HOH . I 5 HOH A 31 231 49 HOH HOH . I 5 HOH A 32 232 28 HOH HOH . I 5 HOH A 33 233 42 HOH HOH . I 5 HOH A 34 234 43 HOH HOH . I 5 HOH A 35 235 63 HOH HOH . I 5 HOH A 36 236 34 HOH HOH . I 5 HOH A 37 237 18 HOH HOH . I 5 HOH A 38 238 32 HOH HOH . I 5 HOH A 39 239 17 HOH HOH . I 5 HOH A 40 240 3 HOH HOH . I 5 HOH A 41 241 155 HOH HOH . I 5 HOH A 42 242 31 HOH HOH . I 5 HOH A 43 243 39 HOH HOH . I 5 HOH A 44 244 48 HOH HOH . I 5 HOH A 45 245 192 HOH HOH . I 5 HOH A 46 246 30 HOH HOH . I 5 HOH A 47 247 37 HOH HOH . I 5 HOH A 48 248 19 HOH HOH . I 5 HOH A 49 249 5 HOH HOH . I 5 HOH A 50 250 9 HOH HOH . I 5 HOH A 51 251 11 HOH HOH . I 5 HOH A 52 252 88 HOH HOH . I 5 HOH A 53 253 8 HOH HOH . I 5 HOH A 54 254 47 HOH HOH . I 5 HOH A 55 255 180 HOH HOH . I 5 HOH A 56 256 191 HOH HOH . I 5 HOH A 57 257 45 HOH HOH . I 5 HOH A 58 258 55 HOH HOH . I 5 HOH A 59 259 22 HOH HOH . I 5 HOH A 60 260 178 HOH HOH . I 5 HOH A 61 261 179 HOH HOH . I 5 HOH A 62 262 21 HOH HOH . I 5 HOH A 63 263 27 HOH HOH . I 5 HOH A 64 264 33 HOH HOH . I 5 HOH A 65 265 197 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 4 19.6 -50.909 -21.334 0.8 29.19 ? C1 GOL 107 A 1 HETATM 2 O O1 GOL . . . H 4 20.058 -50.2 -20.24 0.8 30.64 ? O1 GOL 107 A 1 HETATM 3 C C2 GOL . . . H 4 19.648 -49.944 -22.528 0.8 28.08 ? C2 GOL 107 A 1 HETATM 4 O O2 GOL . . . H 4 20.681 -50.227 -23.396 0.8 29.01 ? O2 GOL 107 A 1 HETATM 5 C C3 GOL . . . H 4 18.232 -50.011 -23.181 0.8 29.53 ? C3 GOL 107 A 1 HETATM 6 O O3 GOL . . . H 4 18.338 -49.547 -24.525 0.8 28.52 ? O3 GOL 107 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 216 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #