data_8Q6C
#
_model_server_result.job_id            ZrQM_Qfemh-SS_PGR63c5g 
_model_server_result.datetime_utc      '2024-11-19 14:35:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8q6c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":101}' 
#
_entry.id    8Q6C 
#
_exptl.entry_id    8Q6C 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8Q6C 
_cell.length_a            59.824 
_cell.length_b            59.824 
_cell.length_c            64.678 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 8Q6C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    'P 6c' 
_symmetry.space_group_name_H-M     'P 63' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
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loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_455 -y-1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -59.824 0 0 
3 'crystal symmetry operation' 3_445 -x+y-1,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -29.912 -51.809104 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 305 n n 
C1 C2 GOL sing 306 n n 
C1 H11 GOL sing 307 n n 
C1 H12 GOL sing 308 n n 
O1 HO1 GOL sing 309 n n 
C2 O2 GOL sing 310 n n 
C2 C3 GOL sing 311 n n 
C2 H2 GOL sing 312 n n 
O2 HO2 GOL sing 313 n n 
C3 O3 GOL sing 314 n n 
C3 H31 GOL sing 315 n n 
C3 H32 GOL sing 316 n n 
O3 HO3 GOL sing 317 n n 
#
_atom_sites.entry_id                     8Q6C 
_atom_sites.fract_transf_matrix[1][1]    0.016716 
_atom_sites.fract_transf_matrix[1][2]    0.009651 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019302 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015461 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 101 101 GOL GOL . 
C 3 BDF A 1 102 102 BDF BDF . 
D 4 EVB A 1 103 103 EVB EVB . 
E 5 HOH A 1 201 103 HOH HOH . 
E 5 HOH A 2 202 105 HOH HOH . 
E 5 HOH A 3 203 4 HOH HOH . 
E 5 HOH A 4 204 25 HOH HOH . 
E 5 HOH A 5 205 39 HOH HOH . 
E 5 HOH A 6 206 12 HOH HOH . 
E 5 HOH A 7 207 37 HOH HOH . 
E 5 HOH A 8 208 48 HOH HOH . 
E 5 HOH A 9 209 14 HOH HOH . 
E 5 HOH A 10 210 6 HOH HOH . 
E 5 HOH A 11 211 29 HOH HOH . 
E 5 HOH A 12 212 64 HOH HOH . 
E 5 HOH A 13 213 21 HOH HOH . 
E 5 HOH A 14 214 50 HOH HOH . 
E 5 HOH A 15 215 18 HOH HOH . 
E 5 HOH A 16 216 3 HOH HOH . 
E 5 HOH A 17 217 10 HOH HOH . 
E 5 HOH A 18 218 1 HOH HOH . 
E 5 HOH A 19 219 8 HOH HOH . 
E 5 HOH A 20 220 9 HOH HOH . 
E 5 HOH A 21 221 24 HOH HOH . 
E 5 HOH A 22 222 57 HOH HOH . 
E 5 HOH A 23 223 16 HOH HOH . 
E 5 HOH A 24 224 42 HOH HOH . 
E 5 HOH A 25 225 28 HOH HOH . 
E 5 HOH A 26 226 17 HOH HOH . 
E 5 HOH A 27 227 11 HOH HOH . 
E 5 HOH A 28 228 5 HOH HOH . 
E 5 HOH A 29 229 26 HOH HOH . 
E 5 HOH A 30 230 19 HOH HOH . 
E 5 HOH A 31 231 13 HOH HOH . 
E 5 HOH A 32 232 128 HOH HOH . 
E 5 HOH A 33 233 36 HOH HOH . 
E 5 HOH A 34 234 2 HOH HOH . 
E 5 HOH A 35 235 20 HOH HOH . 
E 5 HOH A 36 236 34 HOH HOH . 
E 5 HOH A 37 237 23 HOH HOH . 
E 5 HOH A 38 238 31 HOH HOH . 
E 5 HOH A 39 239 38 HOH HOH . 
E 5 HOH A 40 240 22 HOH HOH . 
E 5 HOH A 41 241 58 HOH HOH . 
E 5 HOH A 42 242 70 HOH HOH . 
E 5 HOH A 43 243 61 HOH HOH . 
E 5 HOH A 44 244 67 HOH HOH . 
E 5 HOH A 45 245 7 HOH HOH . 
E 5 HOH A 46 246 15 HOH HOH . 
E 5 HOH A 47 247 60 HOH HOH . 
E 5 HOH A 48 248 56 HOH HOH . 
E 5 HOH A 49 249 40 HOH HOH . 
E 5 HOH A 50 250 51 HOH HOH . 
E 5 HOH A 51 251 45 HOH HOH . 
E 5 HOH A 52 252 43 HOH HOH . 
E 5 HOH A 53 253 35 HOH HOH . 
E 5 HOH A 54 254 102 HOH HOH . 
E 5 HOH A 55 255 33 HOH HOH . 
E 5 HOH A 56 256 104 HOH HOH . 
E 5 HOH A 57 257 49 HOH HOH . 
E 5 HOH A 58 258 87 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . B 2 -16.099 -25.755 5.158 1 17.93 ? C1 GOL 101 A 1 
HETATM 2 O O1 GOL . . . B 2 -16.517 -24.502 4.633 1 19 ? O1 GOL 101 A 1 
HETATM 3 C C2 GOL . . . B 2 -14.797 -26.217 4.437 1 17.08 ? C2 GOL 101 A 1 
HETATM 4 O O2 GOL . . . B 2 -15.017 -26.534 3.091 1 16.4 ? O2 GOL 101 A 1 
HETATM 5 C C3 GOL . . . B 2 -13.771 -25.066 4.572 1 19.62 ? C3 GOL 101 A 1 
HETATM 6 O O3 GOL . . . B 2 -12.56 -25.515 4 1 20.71 ? O3 GOL 101 A 1 
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_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           332 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           6 
#