data_8Q6E # _model_server_result.job_id W9tcav6zwQt1B1SwjVmbYA _model_server_result.datetime_utc '2024-10-15 15:26:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8q6e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 8Q6E # _exptl.entry_id 8Q6E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8Q6E _cell.length_a 130.9 _cell.length_b 38.12 _cell.length_c 42.77 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8Q6E _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 139 A HIS 313 1_555 H FE FE . A FE 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc2 A OD1 ASP 141 A ASP 315 1_555 H FE FE . A FE 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc3 A NE2 HIS 200 A HIS 374 1_555 H FE FE . A FE 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc4 C MG MG . A MG 501 1_555 J O HOH . A HOH 744 1_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc5 H FE FE . A FE 506 1_555 I O1 AKG . A AKG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc6 H FE FE . A FE 506 1_555 I O5 AKG . A AKG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc7 H FE FE . A FE 506 1_555 J O HOH . A HOH 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8Q6E _atom_sites.fract_transf_matrix[1][1] 0.007639 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026233 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023381 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 501 2 MG MG . D 3 MG A 1 502 3 MG MG . E 3 MG A 1 503 6 MG MG . F 4 CL A 1 504 1 CL CL . G 4 CL A 1 505 3 CL CL . H 5 FE A 1 506 1 FE FE . I 6 AKG A 1 507 1801 AKG AKG . J 7 HOH A 1 601 197 HOH HOH . J 7 HOH A 2 602 53 HOH HOH . J 7 HOH A 3 603 203 HOH HOH . J 7 HOH A 4 604 139 HOH HOH . J 7 HOH A 5 605 99 HOH HOH . J 7 HOH A 6 606 226 HOH HOH . J 7 HOH A 7 607 193 HOH HOH . J 7 HOH A 8 608 97 HOH HOH . J 7 HOH A 9 609 78 HOH HOH . J 7 HOH A 10 610 37 HOH HOH . J 7 HOH A 11 611 185 HOH HOH . J 7 HOH A 12 612 134 HOH HOH . J 7 HOH A 13 613 126 HOH HOH . J 7 HOH A 14 614 112 HOH HOH . J 7 HOH A 15 615 141 HOH HOH . J 7 HOH A 16 616 145 HOH HOH . J 7 HOH A 17 617 1 HOH HOH . J 7 HOH A 18 618 171 HOH HOH . J 7 HOH A 19 619 92 HOH HOH . J 7 HOH A 20 620 239 HOH HOH . J 7 HOH A 21 621 170 HOH HOH . J 7 HOH A 22 622 44 HOH HOH . J 7 HOH A 23 623 11 HOH HOH . J 7 HOH A 24 624 60 HOH HOH . J 7 HOH A 25 625 111 HOH HOH . J 7 HOH A 26 626 2 HOH HOH . J 7 HOH A 27 627 87 HOH HOH . J 7 HOH A 28 628 52 HOH HOH . J 7 HOH A 29 629 28 HOH HOH . J 7 HOH A 30 630 156 HOH HOH . J 7 HOH A 31 631 94 HOH HOH . J 7 HOH A 32 632 14 HOH HOH . J 7 HOH A 33 633 19 HOH HOH . J 7 HOH A 34 634 135 HOH HOH . J 7 HOH A 35 635 148 HOH HOH . J 7 HOH A 36 636 137 HOH HOH . J 7 HOH A 37 637 79 HOH HOH . J 7 HOH A 38 638 218 HOH HOH . J 7 HOH A 39 639 50 HOH HOH . J 7 HOH A 40 640 95 HOH HOH . J 7 HOH A 41 641 109 HOH HOH . J 7 HOH A 42 642 80 HOH HOH . J 7 HOH A 43 643 220 HOH HOH . J 7 HOH A 44 644 71 HOH HOH . J 7 HOH A 45 645 160 HOH HOH . J 7 HOH A 46 646 25 HOH HOH . J 7 HOH A 47 647 100 HOH HOH . J 7 HOH A 48 648 56 HOH HOH . J 7 HOH A 49 649 31 HOH HOH . J 7 HOH A 50 650 46 HOH HOH . J 7 HOH A 51 651 161 HOH HOH . J 7 HOH A 52 652 206 HOH HOH . J 7 HOH A 53 653 64 HOH HOH . J 7 HOH A 54 654 38 HOH HOH . J 7 HOH A 55 655 24 HOH HOH . J 7 HOH A 56 656 27 HOH HOH . J 7 HOH A 57 657 75 HOH HOH . J 7 HOH A 58 658 13 HOH HOH . J 7 HOH A 59 659 72 HOH HOH . J 7 HOH A 60 660 151 HOH HOH . J 7 HOH A 61 661 16 HOH HOH . J 7 HOH A 62 662 21 HOH HOH . J 7 HOH A 63 663 29 HOH HOH . J 7 HOH A 64 664 89 HOH HOH . J 7 HOH A 65 665 131 HOH HOH . J 7 HOH A 66 666 42 HOH HOH . J 7 HOH A 67 667 5 HOH HOH . J 7 HOH A 68 668 149 HOH HOH . J 7 HOH A 69 669 9 HOH HOH . J 7 HOH A 70 670 119 HOH HOH . J 7 HOH A 71 671 187 HOH HOH . J 7 HOH A 72 672 51 HOH HOH . J 7 HOH A 73 673 190 HOH HOH . J 7 HOH A 74 674 182 HOH HOH . J 7 HOH A 75 675 40 HOH HOH . J 7 HOH A 76 676 43 HOH HOH . J 7 HOH A 77 677 168 HOH HOH . J 7 HOH A 78 678 143 HOH HOH . J 7 HOH A 79 679 104 HOH HOH . J 7 HOH A 80 680 117 HOH HOH . J 7 HOH A 81 681 63 HOH HOH . J 7 HOH A 82 682 191 HOH HOH . J 7 HOH A 83 683 48 HOH HOH . J 7 HOH A 84 684 58 HOH HOH . J 7 HOH A 85 685 59 HOH HOH . J 7 HOH A 86 686 61 HOH HOH . J 7 HOH A 87 687 3 HOH HOH . J 7 HOH A 88 688 103 HOH HOH . J 7 HOH A 89 689 192 HOH HOH . J 7 HOH A 90 690 62 HOH HOH . J 7 HOH A 91 691 215 HOH HOH . J 7 HOH A 92 692 234 HOH HOH . J 7 HOH A 93 693 235 HOH HOH . J 7 HOH A 94 694 113 HOH HOH . J 7 HOH A 95 695 17 HOH HOH . J 7 HOH A 96 696 4 HOH HOH . J 7 HOH A 97 697 227 HOH HOH . J 7 HOH A 98 698 105 HOH HOH . J 7 HOH A 99 699 142 HOH HOH . J 7 HOH A 100 700 194 HOH HOH . J 7 HOH A 101 701 207 HOH HOH . J 7 HOH A 102 702 41 HOH HOH . J 7 HOH A 103 703 81 HOH HOH . J 7 HOH A 104 704 67 HOH HOH . J 7 HOH A 105 705 30 HOH HOH . J 7 HOH A 106 706 177 HOH HOH . J 7 HOH A 107 707 250 HOH HOH . J 7 HOH A 108 708 91 HOH HOH . J 7 HOH A 109 709 152 HOH HOH . J 7 HOH A 110 710 153 HOH HOH . J 7 HOH A 111 711 70 HOH HOH . J 7 HOH A 112 712 74 HOH HOH . J 7 HOH A 113 713 12 HOH HOH . J 7 HOH A 114 714 127 HOH HOH . J 7 HOH A 115 715 20 HOH HOH . J 7 HOH A 116 716 93 HOH HOH . J 7 HOH A 117 717 26 HOH HOH . J 7 HOH A 118 718 166 HOH HOH . J 7 HOH A 119 719 49 HOH HOH . J 7 HOH A 120 720 98 HOH HOH . J 7 HOH A 121 721 84 HOH HOH . J 7 HOH A 122 722 35 HOH HOH . J 7 HOH A 123 723 66 HOH HOH . J 7 HOH A 124 724 22 HOH HOH . J 7 HOH A 125 725 69 HOH HOH . J 7 HOH A 126 726 129 HOH HOH . J 7 HOH A 127 727 188 HOH HOH . J 7 HOH A 128 728 214 HOH HOH . J 7 HOH A 129 729 212 HOH HOH . J 7 HOH A 130 730 130 HOH HOH . J 7 HOH A 131 731 83 HOH HOH . J 7 HOH A 132 732 10 HOH HOH . J 7 HOH A 133 733 199 HOH HOH . J 7 HOH A 134 734 251 HOH HOH . J 7 HOH A 135 735 216 HOH HOH . J 7 HOH A 136 736 101 HOH HOH . J 7 HOH A 137 737 36 HOH HOH . J 7 HOH A 138 738 32 HOH HOH . J 7 HOH A 139 739 231 HOH HOH . J 7 HOH A 140 740 121 HOH HOH . J 7 HOH A 141 741 180 HOH HOH . J 7 HOH A 142 742 110 HOH HOH . J 7 HOH A 143 743 45 HOH HOH . J 7 HOH A 144 744 107 HOH HOH . J 7 HOH A 145 745 82 HOH HOH . J 7 HOH A 146 746 146 HOH HOH . J 7 HOH A 147 747 15 HOH HOH . J 7 HOH A 148 748 169 HOH HOH . J 7 HOH A 149 749 229 HOH HOH . J 7 HOH A 150 750 208 HOH HOH . J 7 HOH A 151 751 184 HOH HOH . J 7 HOH A 152 752 115 HOH HOH . J 7 HOH A 153 753 39 HOH HOH . J 7 HOH A 154 754 248 HOH HOH . J 7 HOH A 155 755 124 HOH HOH . J 7 HOH A 156 756 204 HOH HOH . J 7 HOH A 157 757 176 HOH HOH . J 7 HOH A 158 758 167 HOH HOH . J 7 HOH A 159 759 244 HOH HOH . J 7 HOH A 160 760 165 HOH HOH . J 7 HOH A 161 761 138 HOH HOH . J 7 HOH A 162 762 217 HOH HOH . J 7 HOH A 163 763 102 HOH HOH . J 7 HOH A 164 764 18 HOH HOH . J 7 HOH A 165 765 34 HOH HOH . J 7 HOH A 166 766 213 HOH HOH . J 7 HOH A 167 767 54 HOH HOH . J 7 HOH A 168 768 219 HOH HOH . J 7 HOH A 169 769 108 HOH HOH . J 7 HOH A 170 770 252 HOH HOH . J 7 HOH A 171 771 116 HOH HOH . J 7 HOH A 172 772 233 HOH HOH . J 7 HOH A 173 773 33 HOH HOH . J 7 HOH A 174 774 122 HOH HOH . J 7 HOH A 175 775 125 HOH HOH . J 7 HOH A 176 776 179 HOH HOH . J 7 HOH A 177 777 210 HOH HOH . J 7 HOH A 178 778 88 HOH HOH . J 7 HOH A 179 779 241 HOH HOH . J 7 HOH A 180 780 159 HOH HOH . J 7 HOH A 181 781 65 HOH HOH . J 7 HOH A 182 782 189 HOH HOH . J 7 HOH A 183 783 120 HOH HOH . J 7 HOH A 184 784 155 HOH HOH . J 7 HOH A 185 785 136 HOH HOH . J 7 HOH A 186 786 232 HOH HOH . J 7 HOH A 187 787 183 HOH HOH . J 7 HOH A 188 788 175 HOH HOH . J 7 HOH A 189 789 237 HOH HOH . J 7 HOH A 190 790 211 HOH HOH . J 7 HOH A 191 791 224 HOH HOH . J 7 HOH A 192 792 205 HOH HOH . J 7 HOH A 193 793 172 HOH HOH . J 7 HOH A 194 794 178 HOH HOH . J 7 HOH A 195 795 123 HOH HOH . J 7 HOH A 196 796 198 HOH HOH . J 7 HOH A 197 797 106 HOH HOH . J 7 HOH A 198 798 181 HOH HOH . J 7 HOH A 199 799 173 HOH HOH . J 7 HOH A 200 800 202 HOH HOH . J 7 HOH A 201 801 133 HOH HOH . J 7 HOH A 202 802 57 HOH HOH . J 7 HOH A 203 803 238 HOH HOH . J 7 HOH A 204 804 118 HOH HOH . J 7 HOH A 205 805 150 HOH HOH . J 7 HOH A 206 806 225 HOH HOH . J 7 HOH A 207 807 114 HOH HOH . J 7 HOH A 208 808 162 HOH HOH . J 7 HOH A 209 809 68 HOH HOH . J 7 HOH A 210 810 164 HOH HOH . J 7 HOH A 211 811 209 HOH HOH . J 7 HOH A 212 812 243 HOH HOH . J 7 HOH A 213 813 144 HOH HOH . J 7 HOH A 214 814 195 HOH HOH . J 7 HOH A 215 815 228 HOH HOH . J 7 HOH A 216 816 96 HOH HOH . J 7 HOH A 217 817 140 HOH HOH . J 7 HOH A 218 818 246 HOH HOH . J 7 HOH A 219 819 236 HOH HOH . J 7 HOH A 220 820 47 HOH HOH . J 7 HOH A 221 821 201 HOH HOH . J 7 HOH A 222 822 157 HOH HOH . J 7 HOH A 223 823 154 HOH HOH . J 7 HOH A 224 824 222 HOH HOH . K 7 HOH B 1 601 196 HOH HOH . K 7 HOH B 2 602 7 HOH HOH . K 7 HOH B 3 603 8 HOH HOH . K 7 HOH B 4 604 223 HOH HOH . K 7 HOH B 5 605 6 HOH HOH . K 7 HOH B 6 606 73 HOH HOH . K 7 HOH B 7 607 77 HOH HOH . K 7 HOH B 8 608 132 HOH HOH . K 7 HOH B 9 609 23 HOH HOH . K 7 HOH B 10 610 128 HOH HOH . K 7 HOH B 11 611 76 HOH HOH . K 7 HOH B 12 612 245 HOH HOH . K 7 HOH B 13 613 221 HOH HOH . K 7 HOH B 14 614 85 HOH HOH . K 7 HOH B 15 615 55 HOH HOH . K 7 HOH B 16 616 158 HOH HOH . K 7 HOH B 17 617 240 HOH HOH . K 7 HOH B 18 618 200 HOH HOH . K 7 HOH B 19 619 90 HOH HOH . K 7 HOH B 20 620 147 HOH HOH . K 7 HOH B 21 621 86 HOH HOH . K 7 HOH B 22 622 174 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 38.858 _atom_site.Cartn_y 10.635 _atom_site.Cartn_z 14.911 _atom_site.occupancy 0 _atom_site.B_iso_or_equiv 28.71 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 502 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #