data_8Q6K
#
_model_server_result.job_id            zoqkqTeUwTELzHdwCaLD2A 
_model_server_result.datetime_utc      '2024-11-26 16:54:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8q6k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":308}' 
#
_entry.id    8Q6K 
#
_exptl.entry_id    8Q6K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8Q6K 
_cell.length_a            65.74 
_cell.length_b            71.041 
_cell.length_c            122.173 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8Q6K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
? 4 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 L CYS 22 1_555 A SG CYS 90 L CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 A SG CYS 139 L CYS 139 1_555 A SG CYS 198 L CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 A SG CYS 216 L CYS 216 1_555 B SG CYS 136 H CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf5 B SG CYS 149 H CYS 149 1_555 B SG CYS 205 H CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf6 C SG CYS 23 N CYS 23 1_555 C SG CYS 97 N CYS 97 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf7 C SG CYS 23 N CYS 23 1_555 C SG CYS 97 N CYS 97 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.026 ? 
covale ? covale1 A C PCA 1 L PCA 1 1_555 A N SER 2 L SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale2 B C PCA 1 H PCA 1 1_555 B N VAL 2 H VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 89 n n 
C1 C2 EDO sing 90 n n 
C1 H11 EDO sing 91 n n 
C1 H12 EDO sing 92 n n 
O1 HO1 EDO sing 93 n n 
C2 O2 EDO sing 94 n n 
C2 H21 EDO sing 95 n n 
C2 H22 EDO sing 96 n n 
O2 HO2 EDO sing 97 n n 
#
_atom_sites.entry_id                     8Q6K 
_atom_sites.fract_transf_matrix[1][1]    0.015211 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014076 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008185 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 EDO L 1 301 7 EDO EDO . 
E 4 EDO H 1 301 1 EDO EDO . 
F 4 EDO H 1 302 2 EDO EDO . 
G 4 EDO H 1 303 3 EDO EDO . 
H 4 EDO H 1 304 4 EDO EDO . 
I 4 EDO H 1 305 5 EDO EDO . 
J 4 EDO H 1 306 6 EDO EDO . 
K 4 EDO H 1 307 8 EDO EDO . 
L 4 EDO H 1 308 10 EDO EDO . 
M 5 ACT H 1 309 11 ACT ACT . 
N 5 ACT H 1 310 12 ACT ACT . 
O 6 NA H 1 311 1 NA NA . 
P 4 EDO N 1 201 9 EDO EDO . 
Q 7 HOH L 1 401 3 HOH HOH . 
Q 7 HOH L 2 402 59 HOH HOH . 
Q 7 HOH L 3 403 83 HOH HOH . 
Q 7 HOH L 4 404 57 HOH HOH . 
Q 7 HOH L 5 405 12 HOH HOH . 
Q 7 HOH L 6 406 18 HOH HOH . 
Q 7 HOH L 7 407 98 HOH HOH . 
Q 7 HOH L 8 408 39 HOH HOH . 
Q 7 HOH L 9 409 14 HOH HOH . 
Q 7 HOH L 10 410 1 HOH HOH . 
Q 7 HOH L 11 411 81 HOH HOH . 
Q 7 HOH L 12 412 4 HOH HOH . 
Q 7 HOH L 13 413 115 HOH HOH . 
Q 7 HOH L 14 414 11 HOH HOH . 
Q 7 HOH L 15 415 7 HOH HOH . 
Q 7 HOH L 16 416 45 HOH HOH . 
Q 7 HOH L 17 417 9 HOH HOH . 
Q 7 HOH L 18 418 142 HOH HOH . 
Q 7 HOH L 19 419 2 HOH HOH . 
Q 7 HOH L 20 420 41 HOH HOH . 
Q 7 HOH L 21 421 71 HOH HOH . 
Q 7 HOH L 22 422 110 HOH HOH . 
Q 7 HOH L 23 423 43 HOH HOH . 
Q 7 HOH L 24 424 146 HOH HOH . 
Q 7 HOH L 25 425 44 HOH HOH . 
Q 7 HOH L 26 426 117 HOH HOH . 
Q 7 HOH L 27 427 46 HOH HOH . 
Q 7 HOH L 28 428 19 HOH HOH . 
Q 7 HOH L 29 429 96 HOH HOH . 
Q 7 HOH L 30 430 145 HOH HOH . 
Q 7 HOH L 31 431 15 HOH HOH . 
Q 7 HOH L 32 432 20 HOH HOH . 
Q 7 HOH L 33 433 86 HOH HOH . 
Q 7 HOH L 34 434 85 HOH HOH . 
Q 7 HOH L 35 435 118 HOH HOH . 
Q 7 HOH L 36 436 40 HOH HOH . 
Q 7 HOH L 37 437 148 HOH HOH . 
Q 7 HOH L 38 438 84 HOH HOH . 
Q 7 HOH L 39 439 70 HOH HOH . 
Q 7 HOH L 40 440 82 HOH HOH . 
Q 7 HOH L 41 441 92 HOH HOH . 
Q 7 HOH L 42 442 16 HOH HOH . 
Q 7 HOH L 43 443 69 HOH HOH . 
Q 7 HOH L 44 444 67 HOH HOH . 
Q 7 HOH L 45 445 116 HOH HOH . 
Q 7 HOH L 46 446 95 HOH HOH . 
R 7 HOH H 1 401 66 HOH HOH . 
R 7 HOH H 2 402 102 HOH HOH . 
R 7 HOH H 3 403 42 HOH HOH . 
R 7 HOH H 4 404 119 HOH HOH . 
R 7 HOH H 5 405 55 HOH HOH . 
R 7 HOH H 6 406 49 HOH HOH . 
R 7 HOH H 7 407 94 HOH HOH . 
R 7 HOH H 8 408 89 HOH HOH . 
R 7 HOH H 9 409 73 HOH HOH . 
R 7 HOH H 10 410 143 HOH HOH . 
R 7 HOH H 11 411 53 HOH HOH . 
R 7 HOH H 12 412 101 HOH HOH . 
R 7 HOH H 13 413 140 HOH HOH . 
R 7 HOH H 14 414 106 HOH HOH . 
R 7 HOH H 15 415 58 HOH HOH . 
R 7 HOH H 16 416 23 HOH HOH . 
R 7 HOH H 17 417 48 HOH HOH . 
R 7 HOH H 18 418 37 HOH HOH . 
R 7 HOH H 19 419 47 HOH HOH . 
R 7 HOH H 20 420 78 HOH HOH . 
R 7 HOH H 21 421 77 HOH HOH . 
R 7 HOH H 22 422 139 HOH HOH . 
R 7 HOH H 23 423 90 HOH HOH . 
R 7 HOH H 24 424 123 HOH HOH . 
R 7 HOH H 25 425 72 HOH HOH . 
R 7 HOH H 26 426 52 HOH HOH . 
R 7 HOH H 27 427 103 HOH HOH . 
R 7 HOH H 28 428 97 HOH HOH . 
R 7 HOH H 29 429 5 HOH HOH . 
R 7 HOH H 30 430 10 HOH HOH . 
R 7 HOH H 31 431 32 HOH HOH . 
R 7 HOH H 32 432 138 HOH HOH . 
R 7 HOH H 33 433 8 HOH HOH . 
R 7 HOH H 34 434 22 HOH HOH . 
R 7 HOH H 35 435 100 HOH HOH . 
R 7 HOH H 36 436 61 HOH HOH . 
R 7 HOH H 37 437 80 HOH HOH . 
R 7 HOH H 38 438 30 HOH HOH . 
R 7 HOH H 39 439 121 HOH HOH . 
R 7 HOH H 40 440 50 HOH HOH . 
R 7 HOH H 41 441 125 HOH HOH . 
R 7 HOH H 42 442 60 HOH HOH . 
R 7 HOH H 43 443 74 HOH HOH . 
R 7 HOH H 44 444 24 HOH HOH . 
R 7 HOH H 45 445 109 HOH HOH . 
R 7 HOH H 46 446 107 HOH HOH . 
R 7 HOH H 47 447 29 HOH HOH . 
R 7 HOH H 48 448 34 HOH HOH . 
R 7 HOH H 49 449 76 HOH HOH . 
R 7 HOH H 50 450 93 HOH HOH . 
R 7 HOH H 51 451 33 HOH HOH . 
R 7 HOH H 52 452 120 HOH HOH . 
R 7 HOH H 53 453 126 HOH HOH . 
R 7 HOH H 54 454 144 HOH HOH . 
R 7 HOH H 55 455 124 HOH HOH . 
R 7 HOH H 56 456 134 HOH HOH . 
R 7 HOH H 57 457 56 HOH HOH . 
R 7 HOH H 58 458 136 HOH HOH . 
R 7 HOH H 59 459 54 HOH HOH . 
R 7 HOH H 60 460 122 HOH HOH . 
R 7 HOH H 61 461 108 HOH HOH . 
R 7 HOH H 62 462 25 HOH HOH . 
R 7 HOH H 63 463 113 HOH HOH . 
R 7 HOH H 64 464 51 HOH HOH . 
R 7 HOH H 65 465 21 HOH HOH . 
R 7 HOH H 66 466 6 HOH HOH . 
R 7 HOH H 67 467 26 HOH HOH . 
R 7 HOH H 68 468 35 HOH HOH . 
R 7 HOH H 69 469 104 HOH HOH . 
R 7 HOH H 70 470 88 HOH HOH . 
R 7 HOH H 71 471 36 HOH HOH . 
R 7 HOH H 72 472 99 HOH HOH . 
R 7 HOH H 73 473 135 HOH HOH . 
R 7 HOH H 74 474 17 HOH HOH . 
R 7 HOH H 75 475 105 HOH HOH . 
R 7 HOH H 76 476 79 HOH HOH . 
R 7 HOH H 77 477 114 HOH HOH . 
R 7 HOH H 78 478 137 HOH HOH . 
R 7 HOH H 79 479 87 HOH HOH . 
S 7 HOH N 1 301 128 HOH HOH . 
S 7 HOH N 2 302 130 HOH HOH . 
S 7 HOH N 3 303 127 HOH HOH . 
S 7 HOH N 4 304 91 HOH HOH . 
S 7 HOH N 5 305 27 HOH HOH . 
S 7 HOH N 6 306 65 HOH HOH . 
S 7 HOH N 7 307 13 HOH HOH . 
S 7 HOH N 8 308 75 HOH HOH . 
S 7 HOH N 9 309 63 HOH HOH . 
S 7 HOH N 10 310 28 HOH HOH . 
S 7 HOH N 11 311 64 HOH HOH . 
S 7 HOH N 12 312 31 HOH HOH . 
S 7 HOH N 13 313 132 HOH HOH . 
S 7 HOH N 14 314 111 HOH HOH . 
S 7 HOH N 15 315 68 HOH HOH . 
S 7 HOH N 16 316 62 HOH HOH . 
S 7 HOH N 17 317 141 HOH HOH . 
S 7 HOH N 18 318 129 HOH HOH . 
S 7 HOH N 19 319 131 HOH HOH . 
S 7 HOH N 20 320 133 HOH HOH . 
S 7 HOH N 21 321 112 HOH HOH . 
S 7 HOH N 22 322 38 HOH HOH . 
S 7 HOH N 23 323 147 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . L 4 -13.13 3.979 -16.24 1 44.84 ? C1 EDO 308 H 1 
HETATM 2 O O1 EDO . . . L 4 -13.556 3.09 -15.198 1 57.57 ? O1 EDO 308 H 1 
HETATM 3 C C2 EDO . . . L 4 -12.056 4.92 -15.704 1 51.07 ? C2 EDO 308 H 1 
HETATM 4 O O2 EDO . . . L 4 -10.984 4.157 -15.132 1 54.01 ? O2 EDO 308 H 1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           242 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#