data_8Q77 # _model_server_result.job_id M9jqdvgLgBA3YJOGDK25oA _model_server_result.datetime_utc '2024-10-15 11:29:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8q77 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":406}' # _entry.id 8Q77 # _exptl.entry_id 8Q77 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 66.59 _cell.angle_beta 89.67 _cell.angle_gamma 88.16 _cell.entry_id 8Q77 _cell.length_a 46.603 _cell.length_b 47.919 _cell.length_c 51.031 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8Q77 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8Q77 _atom_sites.fract_transf_matrix[1][1] 0.021458 _atom_sites.fract_transf_matrix[1][2] -0.000689 _atom_sites.fract_transf_matrix[1][3] 0.000164 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020879 _atom_sites.fract_transf_matrix[2][3] -0.00904 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021354 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LN3 A 1 401 401 LN3 780 . C 2 LN3 A 1 402 402 LN3 780 . D 3 EDO A 1 403 403 EDO EDO . E 3 EDO A 1 404 404 EDO EDO . F 3 EDO A 1 405 405 EDO EDO . G 3 EDO A 1 406 406 EDO EDO . H 3 EDO A 1 407 407 EDO EDO . I 3 EDO A 1 408 408 EDO EDO . J 4 CL A 1 409 1 CL CL . K 5 HOH A 1 501 171 HOH HOH . K 5 HOH A 2 502 175 HOH HOH . K 5 HOH A 3 503 195 HOH HOH . K 5 HOH A 4 504 272 HOH HOH . K 5 HOH A 5 505 283 HOH HOH . K 5 HOH A 6 506 213 HOH HOH . K 5 HOH A 7 507 234 HOH HOH . K 5 HOH A 8 508 303 HOH HOH . K 5 HOH A 9 509 160 HOH HOH . K 5 HOH A 10 510 314 HOH HOH . K 5 HOH A 11 511 145 HOH HOH . K 5 HOH A 12 512 58 HOH HOH . K 5 HOH A 13 513 101 HOH HOH . K 5 HOH A 14 514 104 HOH HOH . K 5 HOH A 15 515 281 HOH HOH . K 5 HOH A 16 516 216 HOH HOH . K 5 HOH A 17 517 83 HOH HOH . K 5 HOH A 18 518 73 HOH HOH . K 5 HOH A 19 519 115 HOH HOH . K 5 HOH A 20 520 71 HOH HOH . K 5 HOH A 21 521 100 HOH HOH . K 5 HOH A 22 522 35 HOH HOH . K 5 HOH A 23 523 186 HOH HOH . K 5 HOH A 24 524 39 HOH HOH . K 5 HOH A 25 525 220 HOH HOH . K 5 HOH A 26 526 91 HOH HOH . K 5 HOH A 27 527 311 HOH HOH . K 5 HOH A 28 528 225 HOH HOH . K 5 HOH A 29 529 27 HOH HOH . K 5 HOH A 30 530 43 HOH HOH . K 5 HOH A 31 531 33 HOH HOH . K 5 HOH A 32 532 284 HOH HOH . K 5 HOH A 33 533 56 HOH HOH . K 5 HOH A 34 534 44 HOH HOH . K 5 HOH A 35 535 48 HOH HOH . K 5 HOH A 36 536 214 HOH HOH . K 5 HOH A 37 537 45 HOH HOH . K 5 HOH A 38 538 227 HOH HOH . K 5 HOH A 39 539 103 HOH HOH . K 5 HOH A 40 540 78 HOH HOH . K 5 HOH A 41 541 270 HOH HOH . K 5 HOH A 42 542 47 HOH HOH . K 5 HOH A 43 543 287 HOH HOH . K 5 HOH A 44 544 111 HOH HOH . K 5 HOH A 45 545 10 HOH HOH . K 5 HOH A 46 546 17 HOH HOH . K 5 HOH A 47 547 30 HOH HOH . K 5 HOH A 48 548 131 HOH HOH . K 5 HOH A 49 549 66 HOH HOH . K 5 HOH A 50 550 152 HOH HOH . K 5 HOH A 51 551 50 HOH HOH . K 5 HOH A 52 552 242 HOH HOH . K 5 HOH A 53 553 285 HOH HOH . K 5 HOH A 54 554 154 HOH HOH . K 5 HOH A 55 555 238 HOH HOH . K 5 HOH A 56 556 159 HOH HOH . K 5 HOH A 57 557 2 HOH HOH . K 5 HOH A 58 558 42 HOH HOH . K 5 HOH A 59 559 72 HOH HOH . K 5 HOH A 60 560 11 HOH HOH . K 5 HOH A 61 561 65 HOH HOH . K 5 HOH A 62 562 231 HOH HOH . K 5 HOH A 63 563 49 HOH HOH . K 5 HOH A 64 564 206 HOH HOH . K 5 HOH A 65 565 106 HOH HOH . K 5 HOH A 66 566 8 HOH HOH . K 5 HOH A 67 567 4 HOH HOH . K 5 HOH A 68 568 76 HOH HOH . K 5 HOH A 69 569 105 HOH HOH . K 5 HOH A 70 570 127 HOH HOH . K 5 HOH A 71 571 80 HOH HOH . K 5 HOH A 72 572 181 HOH HOH . K 5 HOH A 73 573 116 HOH HOH . K 5 HOH A 74 574 295 HOH HOH . K 5 HOH A 75 575 120 HOH HOH . K 5 HOH A 76 576 174 HOH HOH . K 5 HOH A 77 577 22 HOH HOH . K 5 HOH A 78 578 29 HOH HOH . K 5 HOH A 79 579 143 HOH HOH . K 5 HOH A 80 580 228 HOH HOH . K 5 HOH A 81 581 299 HOH HOH . K 5 HOH A 82 582 55 HOH HOH . K 5 HOH A 83 583 129 HOH HOH . K 5 HOH A 84 584 64 HOH HOH . K 5 HOH A 85 585 147 HOH HOH . K 5 HOH A 86 586 173 HOH HOH . K 5 HOH A 87 587 18 HOH HOH . K 5 HOH A 88 588 59 HOH HOH . K 5 HOH A 89 589 198 HOH HOH . K 5 HOH A 90 590 290 HOH HOH . K 5 HOH A 91 591 93 HOH HOH . K 5 HOH A 92 592 51 HOH HOH . K 5 HOH A 93 593 151 HOH HOH . K 5 HOH A 94 594 122 HOH HOH . K 5 HOH A 95 595 6 HOH HOH . K 5 HOH A 96 596 14 HOH HOH . K 5 HOH A 97 597 304 HOH HOH . K 5 HOH A 98 598 157 HOH HOH . K 5 HOH A 99 599 293 HOH HOH . K 5 HOH A 100 600 277 HOH HOH . K 5 HOH A 101 601 34 HOH HOH . K 5 HOH A 102 602 7 HOH HOH . K 5 HOH A 103 603 26 HOH HOH . K 5 HOH A 104 604 112 HOH HOH . K 5 HOH A 105 605 13 HOH HOH . K 5 HOH A 106 606 28 HOH HOH . K 5 HOH A 107 607 19 HOH HOH . K 5 HOH A 108 608 94 HOH HOH . K 5 HOH A 109 609 67 HOH HOH . K 5 HOH A 110 610 137 HOH HOH . K 5 HOH A 111 611 136 HOH HOH . K 5 HOH A 112 612 123 HOH HOH . K 5 HOH A 113 613 109 HOH HOH . K 5 HOH A 114 614 61 HOH HOH . K 5 HOH A 115 615 130 HOH HOH . K 5 HOH A 116 616 16 HOH HOH . K 5 HOH A 117 617 134 HOH HOH . K 5 HOH A 118 618 75 HOH HOH . K 5 HOH A 119 619 200 HOH HOH . K 5 HOH A 120 620 41 HOH HOH . K 5 HOH A 121 621 5 HOH HOH . K 5 HOH A 122 622 142 HOH HOH . K 5 HOH A 123 623 77 HOH HOH . K 5 HOH A 124 624 261 HOH HOH . K 5 HOH A 125 625 54 HOH HOH . K 5 HOH A 126 626 113 HOH HOH . K 5 HOH A 127 627 84 HOH HOH . K 5 HOH A 128 628 69 HOH HOH . K 5 HOH A 129 629 12 HOH HOH . K 5 HOH A 130 630 102 HOH HOH . K 5 HOH A 131 631 40 HOH HOH . K 5 HOH A 132 632 9 HOH HOH . K 5 HOH A 133 633 170 HOH HOH . K 5 HOH A 134 634 15 HOH HOH . K 5 HOH A 135 635 178 HOH HOH . K 5 HOH A 136 636 205 HOH HOH . K 5 HOH A 137 637 235 HOH HOH . K 5 HOH A 138 638 63 HOH HOH . K 5 HOH A 139 639 292 HOH HOH . K 5 HOH A 140 640 3 HOH HOH . K 5 HOH A 141 641 326 HOH HOH . K 5 HOH A 142 642 32 HOH HOH . K 5 HOH A 143 643 92 HOH HOH . K 5 HOH A 144 644 209 HOH HOH . K 5 HOH A 145 645 89 HOH HOH . K 5 HOH A 146 646 210 HOH HOH . K 5 HOH A 147 647 193 HOH HOH . K 5 HOH A 148 648 99 HOH HOH . K 5 HOH A 149 649 128 HOH HOH . K 5 HOH A 150 650 125 HOH HOH . K 5 HOH A 151 651 307 HOH HOH . K 5 HOH A 152 652 321 HOH HOH . K 5 HOH A 153 653 305 HOH HOH . K 5 HOH A 154 654 156 HOH HOH . K 5 HOH A 155 655 20 HOH HOH . K 5 HOH A 156 656 74 HOH HOH . K 5 HOH A 157 657 46 HOH HOH . K 5 HOH A 158 658 194 HOH HOH . K 5 HOH A 159 659 279 HOH HOH . K 5 HOH A 160 660 60 HOH HOH . K 5 HOH A 161 661 309 HOH HOH . K 5 HOH A 162 662 218 HOH HOH . K 5 HOH A 163 663 232 HOH HOH . K 5 HOH A 164 664 331 HOH HOH . K 5 HOH A 165 665 107 HOH HOH . K 5 HOH A 166 666 316 HOH HOH . K 5 HOH A 167 667 85 HOH HOH . K 5 HOH A 168 668 189 HOH HOH . K 5 HOH A 169 669 70 HOH HOH . K 5 HOH A 170 670 79 HOH HOH . K 5 HOH A 171 671 36 HOH HOH . K 5 HOH A 172 672 31 HOH HOH . K 5 HOH A 173 673 96 HOH HOH . K 5 HOH A 174 674 95 HOH HOH . K 5 HOH A 175 675 253 HOH HOH . K 5 HOH A 176 676 57 HOH HOH . K 5 HOH A 177 677 155 HOH HOH . K 5 HOH A 178 678 81 HOH HOH . K 5 HOH A 179 679 327 HOH HOH . K 5 HOH A 180 680 119 HOH HOH . K 5 HOH A 181 681 185 HOH HOH . K 5 HOH A 182 682 117 HOH HOH . K 5 HOH A 183 683 146 HOH HOH . K 5 HOH A 184 684 269 HOH HOH . K 5 HOH A 185 685 38 HOH HOH . K 5 HOH A 186 686 188 HOH HOH . K 5 HOH A 187 687 21 HOH HOH . K 5 HOH A 188 688 322 HOH HOH . K 5 HOH A 189 689 1 HOH HOH . K 5 HOH A 190 690 296 HOH HOH . K 5 HOH A 191 691 241 HOH HOH . K 5 HOH A 192 692 164 HOH HOH . K 5 HOH A 193 693 110 HOH HOH . K 5 HOH A 194 694 114 HOH HOH . K 5 HOH A 195 695 262 HOH HOH . K 5 HOH A 196 696 192 HOH HOH . K 5 HOH A 197 697 230 HOH HOH . K 5 HOH A 198 698 62 HOH HOH . K 5 HOH A 199 699 153 HOH HOH . K 5 HOH A 200 700 52 HOH HOH . K 5 HOH A 201 701 208 HOH HOH . K 5 HOH A 202 702 126 HOH HOH . K 5 HOH A 203 703 90 HOH HOH . K 5 HOH A 204 704 37 HOH HOH . K 5 HOH A 205 705 182 HOH HOH . K 5 HOH A 206 706 196 HOH HOH . K 5 HOH A 207 707 179 HOH HOH . K 5 HOH A 208 708 141 HOH HOH . K 5 HOH A 209 709 328 HOH HOH . K 5 HOH A 210 710 23 HOH HOH . K 5 HOH A 211 711 203 HOH HOH . K 5 HOH A 212 712 223 HOH HOH . K 5 HOH A 213 713 108 HOH HOH . K 5 HOH A 214 714 240 HOH HOH . K 5 HOH A 215 715 229 HOH HOH . K 5 HOH A 216 716 276 HOH HOH . K 5 HOH A 217 717 150 HOH HOH . K 5 HOH A 218 718 168 HOH HOH . K 5 HOH A 219 719 158 HOH HOH . K 5 HOH A 220 720 338 HOH HOH . K 5 HOH A 221 721 124 HOH HOH . K 5 HOH A 222 722 148 HOH HOH . K 5 HOH A 223 723 190 HOH HOH . K 5 HOH A 224 724 217 HOH HOH . K 5 HOH A 225 725 341 HOH HOH . K 5 HOH A 226 726 258 HOH HOH . K 5 HOH A 227 727 121 HOH HOH . K 5 HOH A 228 728 98 HOH HOH . K 5 HOH A 229 729 133 HOH HOH . K 5 HOH A 230 730 163 HOH HOH . K 5 HOH A 231 731 325 HOH HOH . K 5 HOH A 232 732 342 HOH HOH . K 5 HOH A 233 733 260 HOH HOH . K 5 HOH A 234 734 310 HOH HOH . K 5 HOH A 235 735 224 HOH HOH . K 5 HOH A 236 736 138 HOH HOH . K 5 HOH A 237 737 97 HOH HOH . K 5 HOH A 238 738 337 HOH HOH . K 5 HOH A 239 739 330 HOH HOH . K 5 HOH A 240 740 199 HOH HOH . K 5 HOH A 241 741 204 HOH HOH . K 5 HOH A 242 742 345 HOH HOH . K 5 HOH A 243 743 266 HOH HOH . K 5 HOH A 244 744 274 HOH HOH . K 5 HOH A 245 745 233 HOH HOH . K 5 HOH A 246 746 334 HOH HOH . K 5 HOH A 247 747 257 HOH HOH . K 5 HOH A 248 748 239 HOH HOH . K 5 HOH A 249 749 329 HOH HOH . K 5 HOH A 250 750 339 HOH HOH . K 5 HOH A 251 751 169 HOH HOH . K 5 HOH A 252 752 202 HOH HOH . K 5 HOH A 253 753 250 HOH HOH . K 5 HOH A 254 754 324 HOH HOH . K 5 HOH A 255 755 267 HOH HOH . K 5 HOH A 256 756 263 HOH HOH . K 5 HOH A 257 757 251 HOH HOH . K 5 HOH A 258 758 86 HOH HOH . K 5 HOH A 259 759 191 HOH HOH . K 5 HOH A 260 760 312 HOH HOH . K 5 HOH A 261 761 319 HOH HOH . K 5 HOH A 262 762 332 HOH HOH . K 5 HOH A 263 763 24 HOH HOH . K 5 HOH A 264 764 167 HOH HOH . K 5 HOH A 265 765 247 HOH HOH . K 5 HOH A 266 766 265 HOH HOH . K 5 HOH A 267 767 249 HOH HOH . K 5 HOH A 268 768 336 HOH HOH . K 5 HOH A 269 769 53 HOH HOH . K 5 HOH A 270 770 197 HOH HOH . K 5 HOH A 271 771 207 HOH HOH . K 5 HOH A 272 772 161 HOH HOH . K 5 HOH A 273 773 177 HOH HOH . K 5 HOH A 274 774 215 HOH HOH . K 5 HOH A 275 775 297 HOH HOH . K 5 HOH A 276 776 118 HOH HOH . K 5 HOH A 277 777 271 HOH HOH . K 5 HOH A 278 778 243 HOH HOH . K 5 HOH A 279 779 298 HOH HOH . K 5 HOH A 280 780 219 HOH HOH . K 5 HOH A 281 781 300 HOH HOH . K 5 HOH A 282 782 184 HOH HOH . K 5 HOH A 283 783 344 HOH HOH . K 5 HOH A 284 784 68 HOH HOH . K 5 HOH A 285 785 162 HOH HOH . K 5 HOH A 286 786 302 HOH HOH . K 5 HOH A 287 787 340 HOH HOH . K 5 HOH A 288 788 149 HOH HOH . K 5 HOH A 289 789 248 HOH HOH . K 5 HOH A 290 790 343 HOH HOH . K 5 HOH A 291 791 320 HOH HOH . K 5 HOH A 292 792 140 HOH HOH . K 5 HOH A 293 793 211 HOH HOH . K 5 HOH A 294 794 282 HOH HOH . K 5 HOH A 295 795 166 HOH HOH . K 5 HOH A 296 796 88 HOH HOH . K 5 HOH A 297 797 268 HOH HOH . K 5 HOH A 298 798 323 HOH HOH . K 5 HOH A 299 799 180 HOH HOH . K 5 HOH A 300 800 313 HOH HOH . K 5 HOH A 301 801 144 HOH HOH . K 5 HOH A 302 802 301 HOH HOH . K 5 HOH A 303 803 201 HOH HOH . K 5 HOH A 304 804 255 HOH HOH . K 5 HOH A 305 805 333 HOH HOH . K 5 HOH A 306 806 256 HOH HOH . K 5 HOH A 307 807 222 HOH HOH . K 5 HOH A 308 808 306 HOH HOH . K 5 HOH A 309 809 318 HOH HOH . K 5 HOH A 310 810 187 HOH HOH . K 5 HOH A 311 811 221 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 3 -15.705 -7.354 3.423 1 19.29 ? C1 EDO 406 A 1 HETATM 2 O O1 EDO . . . G 3 -16.412 -8.58 3.117 1 15.37 ? O1 EDO 406 A 1 HETATM 3 C C2 EDO . . . G 3 -14.622 -7.517 4.438 1 22.68 ? C2 EDO 406 A 1 HETATM 4 O O2 EDO . . . G 3 -15.214 -7.684 5.721 1 24.1 ? O2 EDO 406 A 1 HETATM 5 H H11 EDO . . . G 3 -15.267 -6.963 2.502 1 23.16 ? H11 EDO 406 A 1 HETATM 6 H H12 EDO . . . G 3 -16.423 -6.619 3.791 1 23.16 ? H12 EDO 406 A 1 HETATM 7 H HO1 EDO . . . G 3 -17.14 -8.39 2.51 1 18.46 ? HO1 EDO 406 A 1 HETATM 8 H H21 EDO . . . G 3 -13.974 -6.638 4.437 1 27.24 ? H21 EDO 406 A 1 HETATM 9 H H22 EDO . . . G 3 -14.008 -8.387 4.194 1 27.24 ? H22 EDO 406 A 1 HETATM 10 H HO2 EDO . . . G 3 -14.519 -7.783 6.386 1 28.94 ? HO2 EDO 406 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #