data_8Q7B # _model_server_result.job_id gNXxRru2ncit5iFfulrjKw _model_server_result.datetime_utc '2024-12-01 05:03:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8q7b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":1301}' # _entry.id 8Q7B # _exptl.entry_id 8Q7B _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 523.664 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '~{tert}-butyl 3-[(2~{S},5~{S},8~{S})-14-cyclopentyloxy-2-(2-methylpropyl)-4,7-bis(oxidanylidene)-3,6,17-triazatetracyclo[8.7.0.0^{3,8}.0^{11,16}]heptadeca-1(10),11,13,15-tetraen-5-yl]propanoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8Q7B _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8Q7B _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 N N N ? 6 O N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n G NAG 1 G 1 NAG B 1102 NAG 4 n G NAG 2 G 2 NAG B 1103 NAG 4 n H NAG 1 H 1 NAG A 1102 NAG 4 n H NAG 2 H 2 NAG A 1103 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 D CYS 22 1_555 A SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 B SG CYS 23 E CYS 23 1_555 B SG CYS 88 E CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 C SG CYS 22 F CYS 22 1_555 C SG CYS 96 F CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf4 D SG CYS 592 B CYS 592 1_555 D SG CYS 608 B CYS 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 D SG CYS 603 B CYS 603 1_555 E SG CYS 603 A CYS 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 E SG CYS 592 A CYS 592 1_555 E SG CYS 608 A CYS 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf7 F SG CYS 23 C CYS 23 1_555 F SG CYS 88 C CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? covale ? covale1 D ND2 ASN 596 B ASN 596 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale2 E ND2 ASN 596 A ASN 596 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale3 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale4 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'C30 H41 N3 O5' _chem_comp.formula_weight 523.664 _chem_comp.id BWQ _chem_comp.mon_nstd_flag . _chem_comp.name '~{tert}-butyl 3-[(2~{S},5~{S},8~{S})-14-cyclopentyloxy-2-(2-methylpropyl)-4,7-bis(oxidanylidene)-3,6,17-triazatetracyclo[8.7.0.0^{3,8}.0^{11,16}]heptadeca-1(10),11,13,15-tetraen-5-yl]propanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 C14 BWQ sing 70 n n C15 C16 BWQ sing 71 n n C14 C13 BWQ sing 72 n n C16 C12 BWQ sing 73 n n C13 C12 BWQ sing 74 n n C12 O11 BWQ sing 75 n n O11 C10 BWQ sing 76 n n C10 C09 BWQ doub 77 n y C10 C17 BWQ sing 78 n y C09 C08 BWQ sing 79 n y C17 C18 BWQ doub 80 n y C08 N07 BWQ sing 81 n y C08 C19 BWQ doub 82 n y C18 C19 BWQ sing 83 n y N07 C06 BWQ sing 84 n y C19 C20 BWQ sing 85 n y C01 C02 BWQ sing 86 n n C02 C03 BWQ sing 87 n n C02 C04 BWQ sing 88 n n C06 C20 BWQ doub 89 n y C06 C05 BWQ sing 90 n n C20 C21 BWQ sing 91 n n C05 C04 BWQ sing 92 n n C05 N38 BWQ sing 93 n n C21 C22 BWQ sing 94 n n N38 C22 BWQ sing 95 n n N38 C36 BWQ sing 96 n n C22 C23 BWQ sing 97 n n O37 C36 BWQ doub 98 n n C36 C26 BWQ sing 99 n n C23 O24 BWQ doub 100 n n C23 N25 BWQ sing 101 n n C26 N25 BWQ sing 102 n n C26 C27 BWQ sing 103 n n C27 C28 BWQ sing 104 n n C28 C29 BWQ sing 105 n n C35 C32 BWQ sing 106 n n O31 C29 BWQ sing 107 n n O31 C32 BWQ sing 108 n n C33 C32 BWQ sing 109 n n C29 O30 BWQ doub 110 n n C32 C34 BWQ sing 111 n n C01 H1 BWQ sing 112 n n C01 H2 BWQ sing 113 n n C01 H3 BWQ sing 114 n n C02 H4 BWQ sing 115 n n C03 H5 BWQ sing 116 n n C03 H6 BWQ sing 117 n n C03 H7 BWQ sing 118 n n C04 H8 BWQ sing 119 n n C04 H9 BWQ sing 120 n n C05 H10 BWQ sing 121 n n C09 H11 BWQ sing 122 n n C12 H12 BWQ sing 123 n n C13 H13 BWQ sing 124 n n C13 H14 BWQ sing 125 n n C14 H15 BWQ sing 126 n n C14 H16 BWQ sing 127 n n C15 H17 BWQ sing 128 n n C15 H18 BWQ sing 129 n n C16 H19 BWQ sing 130 n n C16 H20 BWQ sing 131 n n C17 H21 BWQ sing 132 n n C18 H22 BWQ sing 133 n n C21 H23 BWQ sing 134 n n C21 H24 BWQ sing 135 n n C22 H25 BWQ sing 136 n n C26 H26 BWQ sing 137 n n C27 H27 BWQ sing 138 n n C27 H28 BWQ sing 139 n n C28 H29 BWQ sing 140 n n C28 H30 BWQ sing 141 n n C33 H31 BWQ sing 142 n n C33 H32 BWQ sing 143 n n C33 H33 BWQ sing 144 n n C34 H34 BWQ sing 145 n n C34 H35 BWQ sing 146 n n C34 H36 BWQ sing 147 n n C35 H37 BWQ sing 148 n n C35 H38 BWQ sing 149 n n C35 H39 BWQ sing 150 n n N07 H40 BWQ sing 151 n n N25 H41 BWQ sing 152 n n # _atom_sites.entry_id 8Q7B _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 CLR B 1 701 702 CLR CLR . J 5 CLR B 1 702 703 CLR CLR . K 5 CLR B 1 703 704 CLR CLR . L 5 CLR B 1 704 706 CLR CLR . M 5 CLR B 1 705 1201 CLR CLR . N 6 BWQ B 1 706 1301 BWQ BWQ . O 6 BWQ A 1 1301 1301 BWQ BWQ . P 5 CLR A 1 1302 702 CLR CLR . Q 5 CLR A 1 1303 703 CLR CLR . R 5 CLR A 1 1304 704 CLR CLR . S 5 CLR A 1 1305 706 CLR CLR . T 5 CLR A 1 1306 1201 CLR CLR . U 7 HOH E 1 301 43 HOH HOH . U 7 HOH E 2 302 45 HOH HOH . V 7 HOH B 1 801 42 HOH HOH . V 7 HOH B 2 802 39 HOH HOH . V 7 HOH B 3 803 46 HOH HOH . V 7 HOH B 4 804 4 HOH HOH . V 7 HOH B 5 805 35 HOH HOH . V 7 HOH B 6 806 21 HOH HOH . V 7 HOH B 7 807 14 HOH HOH . V 7 HOH B 8 808 9 HOH HOH . V 7 HOH B 9 809 12 HOH HOH . V 7 HOH B 10 810 20 HOH HOH . V 7 HOH B 11 811 2 HOH HOH . V 7 HOH B 12 812 1 HOH HOH . V 7 HOH B 13 813 19 HOH HOH . V 7 HOH B 14 814 38 HOH HOH . V 7 HOH B 15 815 7 HOH HOH . V 7 HOH B 16 816 15 HOH HOH . V 7 HOH B 17 817 41 HOH HOH . V 7 HOH B 18 818 22 HOH HOH . V 7 HOH B 19 819 48 HOH HOH . V 7 HOH B 20 820 37 HOH HOH . V 7 HOH B 21 821 16 HOH HOH . V 7 HOH B 22 822 5 HOH HOH . W 7 HOH A 1 1401 34 HOH HOH . W 7 HOH A 2 1402 26 HOH HOH . W 7 HOH A 3 1403 3 HOH HOH . W 7 HOH A 4 1404 36 HOH HOH . W 7 HOH A 5 1405 30 HOH HOH . W 7 HOH A 6 1406 44 HOH HOH . W 7 HOH A 7 1407 33 HOH HOH . W 7 HOH A 8 1408 27 HOH HOH . W 7 HOH A 9 1409 23 HOH HOH . W 7 HOH A 10 1410 10 HOH HOH . W 7 HOH A 11 1411 11 HOH HOH . W 7 HOH A 12 1412 17 HOH HOH . W 7 HOH A 13 1413 8 HOH HOH . W 7 HOH A 14 1414 28 HOH HOH . W 7 HOH A 15 1415 40 HOH HOH . W 7 HOH A 16 1416 31 HOH HOH . W 7 HOH A 17 1417 32 HOH HOH . W 7 HOH A 18 1418 29 HOH HOH . W 7 HOH A 19 1419 25 HOH HOH . W 7 HOH A 20 1420 6 HOH HOH . W 7 HOH A 21 1421 18 HOH HOH . W 7 HOH A 22 1422 24 HOH HOH . X 7 HOH C 1 301 47 HOH HOH . X 7 HOH C 2 302 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 BWQ . . . O 6 119.529 120.735 121.813 1 39.67 ? C01 BWQ 1301 A 1 HETATM 2 C C02 BWQ . . . O 6 118.629 121.27 120.75 1 39.67 ? C02 BWQ 1301 A 1 HETATM 3 C C03 BWQ . . . O 6 118.107 120.074 120.06 1 39.67 ? C03 BWQ 1301 A 1 HETATM 4 C C04 BWQ . . . O 6 119.446 122.127 119.858 1 39.67 ? C04 BWQ 1301 A 1 HETATM 5 C C05 BWQ . . . O 6 119.227 123.597 120.055 1 39.67 ? C05 BWQ 1301 A 1 HETATM 6 C C06 BWQ . . . O 6 120.248 124.042 121.006 1 39.67 ? C06 BWQ 1301 A 1 HETATM 7 C C08 BWQ . . . O 6 121.191 124.552 122.882 1 39.67 ? C08 BWQ 1301 A 1 HETATM 8 C C09 BWQ . . . O 6 121.412 124.777 124.213 1 39.67 ? C09 BWQ 1301 A 1 HETATM 9 C C10 BWQ . . . O 6 122.661 125.179 124.554 1 39.67 ? C10 BWQ 1301 A 1 HETATM 10 C C12 BWQ . . . O 6 124.127 125.184 126.36 1 39.67 ? C12 BWQ 1301 A 1 HETATM 11 C C13 BWQ . . . O 6 124.105 123.779 126.902 1 39.67 ? C13 BWQ 1301 A 1 HETATM 12 C C14 BWQ . . . O 6 123.272 123.911 128.128 1 39.67 ? C14 BWQ 1301 A 1 HETATM 13 C C15 BWQ . . . O 6 123.484 125.33 128.629 1 39.67 ? C15 BWQ 1301 A 1 HETATM 14 C C16 BWQ . . . O 6 124.328 126.032 127.578 1 39.67 ? C16 BWQ 1301 A 1 HETATM 15 C C17 BWQ . . . O 6 123.682 125.357 123.597 1 39.67 ? C17 BWQ 1301 A 1 HETATM 16 C C18 BWQ . . . O 6 123.439 125.116 122.291 1 39.67 ? C18 BWQ 1301 A 1 HETATM 17 C C19 BWQ . . . O 6 122.17 124.705 121.912 1 39.67 ? C19 BWQ 1301 A 1 HETATM 18 C C20 BWQ . . . O 6 121.514 124.357 120.698 1 39.67 ? C20 BWQ 1301 A 1 HETATM 19 C C21 BWQ . . . O 6 121.936 124.314 119.323 1 39.67 ? C21 BWQ 1301 A 1 HETATM 20 C C22 BWQ . . . O 6 120.706 124.827 118.505 1 39.67 ? C22 BWQ 1301 A 1 HETATM 21 C C23 BWQ . . . O 6 120.977 124.749 117.023 1 39.67 ? C23 BWQ 1301 A 1 HETATM 22 C C26 BWQ . . . O 6 118.606 124.914 116.601 1 39.67 ? C26 BWQ 1301 A 1 HETATM 23 C C27 BWQ . . . O 6 117.582 124.439 115.566 1 39.67 ? C27 BWQ 1301 A 1 HETATM 24 C C28 BWQ . . . O 6 118.183 123.421 114.64 1 39.67 ? C28 BWQ 1301 A 1 HETATM 25 C C29 BWQ . . . O 6 117.543 122.136 114.999 1 39.67 ? C29 BWQ 1301 A 1 HETATM 26 C C32 BWQ . . . O 6 115.9 120.897 113.878 1 39.67 ? C32 BWQ 1301 A 1 HETATM 27 C C33 BWQ . . . O 6 116.738 121.076 112.622 1 39.67 ? C33 BWQ 1301 A 1 HETATM 28 C C34 BWQ . . . O 6 116.287 119.576 114.519 1 39.67 ? C34 BWQ 1301 A 1 HETATM 29 C C35 BWQ . . . O 6 114.422 120.912 113.511 1 39.67 ? C35 BWQ 1301 A 1 HETATM 30 C C36 BWQ . . . O 6 118.402 124.256 117.916 1 39.67 ? C36 BWQ 1301 A 1 HETATM 31 N N07 BWQ . . . O 6 120.042 124.142 122.326 1 39.67 ? N07 BWQ 1301 A 1 HETATM 32 N N25 BWQ . . . O 6 119.934 124.789 116.161 1 39.67 ? N25 BWQ 1301 A 1 HETATM 33 N N38 BWQ . . . O 6 119.426 124.242 118.808 1 39.67 ? N38 BWQ 1301 A 1 HETATM 34 O O11 BWQ . . . O 6 122.891 125.435 125.854 1 39.67 ? O11 BWQ 1301 A 1 HETATM 35 O O24 BWQ . . . O 6 122.089 124.651 116.572 1 39.67 ? O24 BWQ 1301 A 1 HETATM 36 O O30 BWQ . . . O 6 118.164 121.251 115.507 1 39.67 ? O30 BWQ 1301 A 1 HETATM 37 O O31 BWQ . . . O 6 116.227 122.007 114.738 1 39.67 ? O31 BWQ 1301 A 1 HETATM 38 O O37 BWQ . . . O 6 117.31 123.774 118.101 1 39.67 ? O37 BWQ 1301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 38 #