data_8Q7B # _model_server_result.job_id Ab_kU3_wNI0QX-anj6lLNg _model_server_result.datetime_utc '2024-12-01 04:53:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8q7b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":1303}' # _entry.id 8Q7B # _exptl.entry_id 8Q7B _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8Q7B _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8Q7B _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N ? 5 P N N ? 5 Q N N ? 5 R N N ? 5 S N N ? 5 T N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n G NAG 1 G 1 NAG B 1102 NAG 4 n G NAG 2 G 2 NAG B 1103 NAG 4 n H NAG 1 H 1 NAG A 1102 NAG 4 n H NAG 2 H 2 NAG A 1103 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 D CYS 22 1_555 A SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 B SG CYS 23 E CYS 23 1_555 B SG CYS 88 E CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 C SG CYS 22 F CYS 22 1_555 C SG CYS 96 F CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf4 D SG CYS 592 B CYS 592 1_555 D SG CYS 608 B CYS 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 D SG CYS 603 B CYS 603 1_555 E SG CYS 603 A CYS 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 E SG CYS 592 A CYS 592 1_555 E SG CYS 608 A CYS 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf7 F SG CYS 23 C CYS 23 1_555 F SG CYS 88 C CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? covale ? covale1 D ND2 ASN 596 B ASN 596 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale2 E ND2 ASN 596 A ASN 596 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale3 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale4 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 153 n n C1 C10 CLR sing 154 n n C1 H11 CLR sing 155 n n C1 H12 CLR sing 156 n n C2 C3 CLR sing 157 n n C2 H21 CLR sing 158 n n C2 H22 CLR sing 159 n n C3 C4 CLR sing 160 n n C3 O1 CLR sing 161 n n C3 H3 CLR sing 162 n n C4 C5 CLR sing 163 n n C4 H41 CLR sing 164 n n C4 H42 CLR sing 165 n n C5 C6 CLR doub 166 n n C5 C10 CLR sing 167 n n C6 C7 CLR sing 168 n n C6 H6 CLR sing 169 n n C7 C8 CLR sing 170 n n C7 H71 CLR sing 171 n n C7 H72 CLR sing 172 n n C8 C9 CLR sing 173 n n C8 C14 CLR sing 174 n n C8 H8 CLR sing 175 n n C9 C10 CLR sing 176 n n C9 C11 CLR sing 177 n n C9 H9 CLR sing 178 n n C10 C19 CLR sing 179 n n C11 C12 CLR sing 180 n n C11 H111 CLR sing 181 n n C11 H112 CLR sing 182 n n C12 C13 CLR sing 183 n n C12 H121 CLR sing 184 n n C12 H122 CLR sing 185 n n C13 C14 CLR sing 186 n n C13 C17 CLR sing 187 n n C13 C18 CLR sing 188 n n C14 C15 CLR sing 189 n n C14 H14 CLR sing 190 n n C15 C16 CLR sing 191 n n C15 H151 CLR sing 192 n n C15 H152 CLR sing 193 n n C16 C17 CLR sing 194 n n C16 H161 CLR sing 195 n n C16 H162 CLR sing 196 n n C17 C20 CLR sing 197 n n C17 H17 CLR sing 198 n n C18 H181 CLR sing 199 n n C18 H182 CLR sing 200 n n C18 H183 CLR sing 201 n n C19 H191 CLR sing 202 n n C19 H192 CLR sing 203 n n C19 H193 CLR sing 204 n n C20 C21 CLR sing 205 n n C20 C22 CLR sing 206 n n C20 H20 CLR sing 207 n n C21 H211 CLR sing 208 n n C21 H212 CLR sing 209 n n C21 H213 CLR sing 210 n n C22 C23 CLR sing 211 n n C22 H221 CLR sing 212 n n C22 H222 CLR sing 213 n n C23 C24 CLR sing 214 n n C23 H231 CLR sing 215 n n C23 H232 CLR sing 216 n n C24 C25 CLR sing 217 n n C24 H241 CLR sing 218 n n C24 H242 CLR sing 219 n n C25 C26 CLR sing 220 n n C25 C27 CLR sing 221 n n C25 H25 CLR sing 222 n n C26 H261 CLR sing 223 n n C26 H262 CLR sing 224 n n C26 H263 CLR sing 225 n n C27 H271 CLR sing 226 n n C27 H272 CLR sing 227 n n C27 H273 CLR sing 228 n n O1 H1 CLR sing 229 n n # _atom_sites.entry_id 8Q7B _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 CLR B 1 701 702 CLR CLR . J 5 CLR B 1 702 703 CLR CLR . K 5 CLR B 1 703 704 CLR CLR . L 5 CLR B 1 704 706 CLR CLR . M 5 CLR B 1 705 1201 CLR CLR . N 6 BWQ B 1 706 1301 BWQ BWQ . O 6 BWQ A 1 1301 1301 BWQ BWQ . P 5 CLR A 1 1302 702 CLR CLR . Q 5 CLR A 1 1303 703 CLR CLR . R 5 CLR A 1 1304 704 CLR CLR . S 5 CLR A 1 1305 706 CLR CLR . T 5 CLR A 1 1306 1201 CLR CLR . U 7 HOH E 1 301 43 HOH HOH . U 7 HOH E 2 302 45 HOH HOH . V 7 HOH B 1 801 42 HOH HOH . V 7 HOH B 2 802 39 HOH HOH . V 7 HOH B 3 803 46 HOH HOH . V 7 HOH B 4 804 4 HOH HOH . V 7 HOH B 5 805 35 HOH HOH . V 7 HOH B 6 806 21 HOH HOH . V 7 HOH B 7 807 14 HOH HOH . V 7 HOH B 8 808 9 HOH HOH . V 7 HOH B 9 809 12 HOH HOH . V 7 HOH B 10 810 20 HOH HOH . V 7 HOH B 11 811 2 HOH HOH . V 7 HOH B 12 812 1 HOH HOH . V 7 HOH B 13 813 19 HOH HOH . V 7 HOH B 14 814 38 HOH HOH . V 7 HOH B 15 815 7 HOH HOH . V 7 HOH B 16 816 15 HOH HOH . V 7 HOH B 17 817 41 HOH HOH . V 7 HOH B 18 818 22 HOH HOH . V 7 HOH B 19 819 48 HOH HOH . V 7 HOH B 20 820 37 HOH HOH . V 7 HOH B 21 821 16 HOH HOH . V 7 HOH B 22 822 5 HOH HOH . W 7 HOH A 1 1401 34 HOH HOH . W 7 HOH A 2 1402 26 HOH HOH . W 7 HOH A 3 1403 3 HOH HOH . W 7 HOH A 4 1404 36 HOH HOH . W 7 HOH A 5 1405 30 HOH HOH . W 7 HOH A 6 1406 44 HOH HOH . W 7 HOH A 7 1407 33 HOH HOH . W 7 HOH A 8 1408 27 HOH HOH . W 7 HOH A 9 1409 23 HOH HOH . W 7 HOH A 10 1410 10 HOH HOH . W 7 HOH A 11 1411 11 HOH HOH . W 7 HOH A 12 1412 17 HOH HOH . W 7 HOH A 13 1413 8 HOH HOH . W 7 HOH A 14 1414 28 HOH HOH . W 7 HOH A 15 1415 40 HOH HOH . W 7 HOH A 16 1416 31 HOH HOH . W 7 HOH A 17 1417 32 HOH HOH . W 7 HOH A 18 1418 29 HOH HOH . W 7 HOH A 19 1419 25 HOH HOH . W 7 HOH A 20 1420 6 HOH HOH . W 7 HOH A 21 1421 18 HOH HOH . W 7 HOH A 22 1422 24 HOH HOH . X 7 HOH C 1 301 47 HOH HOH . X 7 HOH C 2 302 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . Q 5 127.51 109.388 114.553 1 47.73 ? C1 CLR 1303 A 1 HETATM 2 C C2 CLR . . . Q 5 127.681 108.622 113.246 1 47.73 ? C2 CLR 1303 A 1 HETATM 3 C C3 CLR . . . Q 5 129.086 108.075 113.023 1 47.73 ? C3 CLR 1303 A 1 HETATM 4 C C4 CLR . . . Q 5 129.68 107.383 114.256 1 47.73 ? C4 CLR 1303 A 1 HETATM 5 C C5 CLR . . . Q 5 129.362 108.172 115.502 1 47.73 ? C5 CLR 1303 A 1 HETATM 6 C C6 CLR . . . Q 5 130.326 108.548 116.348 1 47.73 ? C6 CLR 1303 A 1 HETATM 7 C C7 CLR . . . Q 5 130.025 109.318 117.612 1 47.73 ? C7 CLR 1303 A 1 HETATM 8 C C8 CLR . . . Q 5 128.648 108.943 118.124 1 47.73 ? C8 CLR 1303 A 1 HETATM 9 C C9 CLR . . . Q 5 127.631 109.235 117.035 1 47.73 ? C9 CLR 1303 A 1 HETATM 10 C C10 CLR . . . Q 5 127.917 108.508 115.721 1 47.73 ? C10 CLR 1303 A 1 HETATM 11 C C11 CLR . . . Q 5 126.201 108.945 117.496 1 47.73 ? C11 CLR 1303 A 1 HETATM 12 C C12 CLR . . . Q 5 125.834 109.685 118.779 1 47.73 ? C12 CLR 1303 A 1 HETATM 13 C C13 CLR . . . Q 5 126.865 109.339 119.838 1 47.73 ? C13 CLR 1303 A 1 HETATM 14 C C14 CLR . . . Q 5 128.238 109.739 119.359 1 47.73 ? C14 CLR 1303 A 1 HETATM 15 C C15 CLR . . . Q 5 129.075 109.607 120.618 1 47.73 ? C15 CLR 1303 A 1 HETATM 16 C C16 CLR . . . Q 5 128.135 110.036 121.744 1 47.73 ? C16 CLR 1303 A 1 HETATM 17 C C17 CLR . . . Q 5 126.732 110.065 121.159 1 47.73 ? C17 CLR 1303 A 1 HETATM 18 C C18 CLR . . . Q 5 126.843 107.839 120.093 1 47.73 ? C18 CLR 1303 A 1 HETATM 19 C C19 CLR . . . Q 5 127.147 107.194 115.663 1 47.73 ? C19 CLR 1303 A 1 HETATM 20 C C20 CLR . . . Q 5 125.691 109.428 122.066 1 47.73 ? C20 CLR 1303 A 1 HETATM 21 C C21 CLR . . . Q 5 124.301 109.717 121.524 1 47.73 ? C21 CLR 1303 A 1 HETATM 22 C C22 CLR . . . Q 5 125.823 109.877 123.517 1 47.73 ? C22 CLR 1303 A 1 HETATM 23 C C23 CLR . . . Q 5 125.135 111.195 123.824 1 47.73 ? C23 CLR 1303 A 1 HETATM 24 C C24 CLR . . . Q 5 125.625 111.723 125.163 1 47.73 ? C24 CLR 1303 A 1 HETATM 25 C C25 CLR . . . Q 5 124.883 111.149 126.351 1 47.73 ? C25 CLR 1303 A 1 HETATM 26 C C26 CLR . . . Q 5 125.539 111.644 127.63 1 47.73 ? C26 CLR 1303 A 1 HETATM 27 C C27 CLR . . . Q 5 123.414 111.528 126.31 1 47.73 ? C27 CLR 1303 A 1 HETATM 28 O O1 CLR . . . Q 5 128.972 107.14 111.952 1 47.73 ? O1 CLR 1303 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #