data_8Q7I # _model_server_result.job_id Z_0iVgEtHCWeEHcKgf7RFA _model_server_result.datetime_utc '2024-12-21 12:39:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8q7i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 8Q7I # _exptl.entry_id 8Q7I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8Q7I _cell.length_a 87.354 _cell.length_b 87.354 _cell.length_c 214.333 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8Q7I _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -y-1,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -43.677 -75.650783 0 3 'crystal symmetry operation' 3_545 -x+y,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 43.677 -75.650783 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ARG 83 A ARG 80 1_555 C NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc2 C NA NA . A NA 301 1_555 E O HOH . A HOH 496 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc3 C NA NA . A NA 301 1_555 E O HOH . A HOH 517 2_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc4 C NA NA . A NA 301 1_555 E O HOH . A HOH 547 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc5 C NA NA . A NA 301 1_555 E O HOH . A HOH 582 2_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc6 C NA NA . A NA 301 1_555 E O HOH . A HOH 673 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc7 D NA NA . A NA 302 1_555 E O HOH . A HOH 401 18_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc8 D NA NA . A NA 302 1_555 E O HOH . A HOH 439 3_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc9 D NA NA . A NA 302 1_555 E O HOH . A HOH 469 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc10 D NA NA . A NA 302 1_555 E O HOH . A HOH 502 18_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc11 D NA NA . A NA 302 1_555 E O HOH . A HOH 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc12 D NA NA . A NA 302 1_555 E O HOH . A HOH 615 18_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8Q7I _atom_sites.fract_transf_matrix[1][1] 0.011448 _atom_sites.fract_transf_matrix[1][2] 0.006609 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013219 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004666 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NA A 1 301 1 NA NA . D 3 NA A 1 302 2 NA NA . E 4 HOH A 1 401 232 HOH HOH . E 4 HOH A 2 402 268 HOH HOH . E 4 HOH A 3 403 74 HOH HOH . E 4 HOH A 4 404 88 HOH HOH . E 4 HOH A 5 405 97 HOH HOH . E 4 HOH A 6 406 265 HOH HOH . E 4 HOH A 7 407 30 HOH HOH . E 4 HOH A 8 408 84 HOH HOH . E 4 HOH A 9 409 8 HOH HOH . E 4 HOH A 10 410 65 HOH HOH . E 4 HOH A 11 411 48 HOH HOH . E 4 HOH A 12 412 246 HOH HOH . E 4 HOH A 13 413 43 HOH HOH . E 4 HOH A 14 414 177 HOH HOH . E 4 HOH A 15 415 165 HOH HOH . E 4 HOH A 16 416 151 HOH HOH . E 4 HOH A 17 417 31 HOH HOH . E 4 HOH A 18 418 240 HOH HOH . E 4 HOH A 19 419 251 HOH HOH . E 4 HOH A 20 420 226 HOH HOH . E 4 HOH A 21 421 250 HOH HOH . E 4 HOH A 22 422 239 HOH HOH . E 4 HOH A 23 423 98 HOH HOH . E 4 HOH A 24 424 46 HOH HOH . E 4 HOH A 25 425 23 HOH HOH . E 4 HOH A 26 426 178 HOH HOH . E 4 HOH A 27 427 236 HOH HOH . E 4 HOH A 28 428 194 HOH HOH . E 4 HOH A 29 429 220 HOH HOH . E 4 HOH A 30 430 102 HOH HOH . E 4 HOH A 31 431 132 HOH HOH . E 4 HOH A 32 432 144 HOH HOH . E 4 HOH A 33 433 37 HOH HOH . E 4 HOH A 34 434 269 HOH HOH . E 4 HOH A 35 435 64 HOH HOH . E 4 HOH A 36 436 40 HOH HOH . E 4 HOH A 37 437 238 HOH HOH . E 4 HOH A 38 438 73 HOH HOH . E 4 HOH A 39 439 45 HOH HOH . E 4 HOH A 40 440 142 HOH HOH . E 4 HOH A 41 441 252 HOH HOH . E 4 HOH A 42 442 278 HOH HOH . E 4 HOH A 43 443 87 HOH HOH . E 4 HOH A 44 444 158 HOH HOH . E 4 HOH A 45 445 14 HOH HOH . E 4 HOH A 46 446 2 HOH HOH . E 4 HOH A 47 447 125 HOH HOH . E 4 HOH A 48 448 83 HOH HOH . E 4 HOH A 49 449 228 HOH HOH . E 4 HOH A 50 450 92 HOH HOH . E 4 HOH A 51 451 104 HOH HOH . E 4 HOH A 52 452 266 HOH HOH . E 4 HOH A 53 453 202 HOH HOH . E 4 HOH A 54 454 118 HOH HOH . E 4 HOH A 55 455 7 HOH HOH . E 4 HOH A 56 456 9 HOH HOH . E 4 HOH A 57 457 260 HOH HOH . E 4 HOH A 58 458 244 HOH HOH . E 4 HOH A 59 459 54 HOH HOH . E 4 HOH A 60 460 53 HOH HOH . E 4 HOH A 61 461 99 HOH HOH . E 4 HOH A 62 462 67 HOH HOH . E 4 HOH A 63 463 107 HOH HOH . E 4 HOH A 64 464 52 HOH HOH . E 4 HOH A 65 465 47 HOH HOH . E 4 HOH A 66 466 249 HOH HOH . E 4 HOH A 67 467 192 HOH HOH . E 4 HOH A 68 468 49 HOH HOH . E 4 HOH A 69 469 231 HOH HOH . E 4 HOH A 70 470 13 HOH HOH . E 4 HOH A 71 471 58 HOH HOH . E 4 HOH A 72 472 20 HOH HOH . E 4 HOH A 73 473 63 HOH HOH . E 4 HOH A 74 474 272 HOH HOH . E 4 HOH A 75 475 29 HOH HOH . E 4 HOH A 76 476 261 HOH HOH . E 4 HOH A 77 477 94 HOH HOH . E 4 HOH A 78 478 16 HOH HOH . E 4 HOH A 79 479 120 HOH HOH . E 4 HOH A 80 480 100 HOH HOH . E 4 HOH A 81 481 207 HOH HOH . E 4 HOH A 82 482 111 HOH HOH . E 4 HOH A 83 483 136 HOH HOH . E 4 HOH A 84 484 71 HOH HOH . E 4 HOH A 85 485 57 HOH HOH . E 4 HOH A 86 486 169 HOH HOH . E 4 HOH A 87 487 146 HOH HOH . E 4 HOH A 88 488 79 HOH HOH . E 4 HOH A 89 489 175 HOH HOH . E 4 HOH A 90 490 157 HOH HOH . E 4 HOH A 91 491 227 HOH HOH . E 4 HOH A 92 492 101 HOH HOH . E 4 HOH A 93 493 70 HOH HOH . E 4 HOH A 94 494 26 HOH HOH . E 4 HOH A 95 495 25 HOH HOH . E 4 HOH A 96 496 126 HOH HOH . E 4 HOH A 97 497 172 HOH HOH . E 4 HOH A 98 498 113 HOH HOH . E 4 HOH A 99 499 85 HOH HOH . E 4 HOH A 100 500 32 HOH HOH . E 4 HOH A 101 501 33 HOH HOH . E 4 HOH A 102 502 230 HOH HOH . E 4 HOH A 103 503 36 HOH HOH . E 4 HOH A 104 504 103 HOH HOH . E 4 HOH A 105 505 10 HOH HOH . E 4 HOH A 106 506 56 HOH HOH . E 4 HOH A 107 507 241 HOH HOH . E 4 HOH A 108 508 50 HOH HOH . E 4 HOH A 109 509 5 HOH HOH . E 4 HOH A 110 510 27 HOH HOH . E 4 HOH A 111 511 271 HOH HOH . E 4 HOH A 112 512 280 HOH HOH . E 4 HOH A 113 513 155 HOH HOH . E 4 HOH A 114 514 134 HOH HOH . E 4 HOH A 115 515 44 HOH HOH . E 4 HOH A 116 516 190 HOH HOH . E 4 HOH A 117 517 72 HOH HOH . E 4 HOH A 118 518 18 HOH HOH . E 4 HOH A 119 519 140 HOH HOH . E 4 HOH A 120 520 59 HOH HOH . E 4 HOH A 121 521 262 HOH HOH . E 4 HOH A 122 522 24 HOH HOH . E 4 HOH A 123 523 176 HOH HOH . E 4 HOH A 124 524 12 HOH HOH . E 4 HOH A 125 525 222 HOH HOH . E 4 HOH A 126 526 267 HOH HOH . E 4 HOH A 127 527 245 HOH HOH . E 4 HOH A 128 528 112 HOH HOH . E 4 HOH A 129 529 276 HOH HOH . E 4 HOH A 130 530 66 HOH HOH . E 4 HOH A 131 531 162 HOH HOH . E 4 HOH A 132 532 86 HOH HOH . E 4 HOH A 133 533 180 HOH HOH . E 4 HOH A 134 534 3 HOH HOH . E 4 HOH A 135 535 4 HOH HOH . E 4 HOH A 136 536 257 HOH HOH . E 4 HOH A 137 537 108 HOH HOH . E 4 HOH A 138 538 122 HOH HOH . E 4 HOH A 139 539 193 HOH HOH . E 4 HOH A 140 540 279 HOH HOH . E 4 HOH A 141 541 11 HOH HOH . E 4 HOH A 142 542 19 HOH HOH . E 4 HOH A 143 543 168 HOH HOH . E 4 HOH A 144 544 183 HOH HOH . E 4 HOH A 145 545 62 HOH HOH . E 4 HOH A 146 546 41 HOH HOH . E 4 HOH A 147 547 109 HOH HOH . E 4 HOH A 148 548 21 HOH HOH . E 4 HOH A 149 549 114 HOH HOH . E 4 HOH A 150 550 89 HOH HOH . E 4 HOH A 151 551 105 HOH HOH . E 4 HOH A 152 552 78 HOH HOH . E 4 HOH A 153 553 34 HOH HOH . E 4 HOH A 154 554 90 HOH HOH . E 4 HOH A 155 555 243 HOH HOH . E 4 HOH A 156 556 75 HOH HOH . E 4 HOH A 157 557 187 HOH HOH . E 4 HOH A 158 558 275 HOH HOH . E 4 HOH A 159 559 233 HOH HOH . E 4 HOH A 160 560 152 HOH HOH . E 4 HOH A 161 561 82 HOH HOH . E 4 HOH A 162 562 77 HOH HOH . E 4 HOH A 163 563 6 HOH HOH . E 4 HOH A 164 564 61 HOH HOH . E 4 HOH A 165 565 55 HOH HOH . E 4 HOH A 166 566 115 HOH HOH . E 4 HOH A 167 567 81 HOH HOH . E 4 HOH A 168 568 17 HOH HOH . E 4 HOH A 169 569 270 HOH HOH . E 4 HOH A 170 570 80 HOH HOH . E 4 HOH A 171 571 264 HOH HOH . E 4 HOH A 172 572 248 HOH HOH . E 4 HOH A 173 573 200 HOH HOH . E 4 HOH A 174 574 242 HOH HOH . E 4 HOH A 175 575 277 HOH HOH . E 4 HOH A 176 576 39 HOH HOH . E 4 HOH A 177 577 130 HOH HOH . E 4 HOH A 178 578 69 HOH HOH . E 4 HOH A 179 579 225 HOH HOH . E 4 HOH A 180 580 22 HOH HOH . E 4 HOH A 181 581 188 HOH HOH . E 4 HOH A 182 582 127 HOH HOH . E 4 HOH A 183 583 133 HOH HOH . E 4 HOH A 184 584 145 HOH HOH . E 4 HOH A 185 585 258 HOH HOH . E 4 HOH A 186 586 129 HOH HOH . E 4 HOH A 187 587 189 HOH HOH . E 4 HOH A 188 588 116 HOH HOH . E 4 HOH A 189 589 28 HOH HOH . E 4 HOH A 190 590 15 HOH HOH . E 4 HOH A 191 591 150 HOH HOH . E 4 HOH A 192 592 137 HOH HOH . E 4 HOH A 193 593 208 HOH HOH . E 4 HOH A 194 594 110 HOH HOH . E 4 HOH A 195 595 156 HOH HOH . E 4 HOH A 196 596 197 HOH HOH . E 4 HOH A 197 597 117 HOH HOH . E 4 HOH A 198 598 42 HOH HOH . E 4 HOH A 199 599 76 HOH HOH . E 4 HOH A 200 600 149 HOH HOH . E 4 HOH A 201 601 216 HOH HOH . E 4 HOH A 202 602 93 HOH HOH . E 4 HOH A 203 603 195 HOH HOH . E 4 HOH A 204 604 160 HOH HOH . E 4 HOH A 205 605 204 HOH HOH . E 4 HOH A 206 606 91 HOH HOH . E 4 HOH A 207 607 170 HOH HOH . E 4 HOH A 208 608 167 HOH HOH . E 4 HOH A 209 609 254 HOH HOH . E 4 HOH A 210 610 95 HOH HOH . E 4 HOH A 211 611 121 HOH HOH . E 4 HOH A 212 612 38 HOH HOH . E 4 HOH A 213 613 196 HOH HOH . E 4 HOH A 214 614 163 HOH HOH . E 4 HOH A 215 615 229 HOH HOH . E 4 HOH A 216 616 173 HOH HOH . E 4 HOH A 217 617 263 HOH HOH . E 4 HOH A 218 618 215 HOH HOH . E 4 HOH A 219 619 191 HOH HOH . E 4 HOH A 220 620 68 HOH HOH . E 4 HOH A 221 621 256 HOH HOH . E 4 HOH A 222 622 186 HOH HOH . E 4 HOH A 223 623 273 HOH HOH . E 4 HOH A 224 624 247 HOH HOH . E 4 HOH A 225 625 119 HOH HOH . E 4 HOH A 226 626 174 HOH HOH . E 4 HOH A 227 627 203 HOH HOH . E 4 HOH A 228 628 223 HOH HOH . E 4 HOH A 229 629 205 HOH HOH . E 4 HOH A 230 630 139 HOH HOH . E 4 HOH A 231 631 214 HOH HOH . E 4 HOH A 232 632 221 HOH HOH . E 4 HOH A 233 633 237 HOH HOH . E 4 HOH A 234 634 219 HOH HOH . E 4 HOH A 235 635 171 HOH HOH . E 4 HOH A 236 636 212 HOH HOH . E 4 HOH A 237 637 199 HOH HOH . E 4 HOH A 238 638 135 HOH HOH . E 4 HOH A 239 639 131 HOH HOH . E 4 HOH A 240 640 60 HOH HOH . E 4 HOH A 241 641 209 HOH HOH . E 4 HOH A 242 642 35 HOH HOH . E 4 HOH A 243 643 153 HOH HOH . E 4 HOH A 244 644 159 HOH HOH . E 4 HOH A 245 645 224 HOH HOH . E 4 HOH A 246 646 234 HOH HOH . E 4 HOH A 247 647 206 HOH HOH . E 4 HOH A 248 648 198 HOH HOH . E 4 HOH A 249 649 182 HOH HOH . E 4 HOH A 250 650 106 HOH HOH . E 4 HOH A 251 651 181 HOH HOH . E 4 HOH A 252 652 259 HOH HOH . E 4 HOH A 253 653 166 HOH HOH . E 4 HOH A 254 654 184 HOH HOH . E 4 HOH A 255 655 201 HOH HOH . E 4 HOH A 256 656 143 HOH HOH . E 4 HOH A 257 657 255 HOH HOH . E 4 HOH A 258 658 179 HOH HOH . E 4 HOH A 259 659 218 HOH HOH . E 4 HOH A 260 660 235 HOH HOH . E 4 HOH A 261 661 164 HOH HOH . E 4 HOH A 262 662 141 HOH HOH . E 4 HOH A 263 663 210 HOH HOH . E 4 HOH A 264 664 211 HOH HOH . E 4 HOH A 265 665 51 HOH HOH . E 4 HOH A 266 666 161 HOH HOH . E 4 HOH A 267 667 148 HOH HOH . E 4 HOH A 268 668 274 HOH HOH . E 4 HOH A 269 669 185 HOH HOH . E 4 HOH A 270 670 253 HOH HOH . E 4 HOH A 271 671 154 HOH HOH . E 4 HOH A 272 672 123 HOH HOH . E 4 HOH A 273 673 213 HOH HOH . E 4 HOH A 274 674 217 HOH HOH . F 4 HOH P 1 401 96 HOH HOH . F 4 HOH P 2 402 1 HOH HOH . F 4 HOH P 3 403 138 HOH HOH . F 4 HOH P 4 404 128 HOH HOH . F 4 HOH P 5 405 147 HOH HOH . F 4 HOH P 6 406 124 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -15.454 _atom_site.Cartn_y -51.569 _atom_site.Cartn_z -19.856 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 21.25 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #