data_8Q7O # _model_server_result.job_id UJdVFrsHC5MrrAsH6MNR0Q _model_server_result.datetime_utc '2024-12-11 07:24:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8q7o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":201}' # _entry.id 8Q7O # _exptl.entry_id 8Q7O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8Q7O _cell.length_a 53.659 _cell.length_b 147.475 _cell.length_c 229.727 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8Q7O _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 J N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 25 A CYS 22 1_555 A SG CYS 98 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 B SG CYS 25 B CYS 22 1_555 B SG CYS 98 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf3 C SG CYS 6 C CYS 28 1_555 C SG CYS 67 C CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 C SG CYS 14 C CYS 36 1_555 C SG CYS 60 C CYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 C SG CYS 51 C CYS 73 1_555 C SG CYS 88 C CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf6 C SG CYS 77 C CYS 99 1_555 C SG CYS 111 C CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 C SG CYS 81 C CYS 103 1_555 C SG CYS 105 C CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf8 D SG CYS 6 D CYS 28 1_555 D SG CYS 67 D CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf9 D SG CYS 14 D CYS 36 1_555 D SG CYS 60 D CYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf10 D SG CYS 51 D CYS 73 1_555 D SG CYS 88 D CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf11 D SG CYS 77 D CYS 99 1_555 D SG CYS 111 D CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf12 D SG CYS 81 D CYS 103 1_555 D SG CYS 105 D CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? covale ? covale1 C ND2 ASN 20 C ASN 42 1_555 H C1 NAG . C NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale2 D ND2 ASN 20 D ASN 42 1_555 M C1 NAG . D NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 158 n n C1 C2 GOL sing 159 n n C1 H11 GOL sing 160 n n C1 H12 GOL sing 161 n n O1 HO1 GOL sing 162 n n C2 O2 GOL sing 163 n n C2 C3 GOL sing 164 n n C2 H2 GOL sing 165 n n O2 HO2 GOL sing 166 n n C3 O3 GOL sing 167 n n C3 H31 GOL sing 168 n n C3 H32 GOL sing 169 n n O3 HO3 GOL sing 170 n n # _atom_sites.entry_id 8Q7O _atom_sites.fract_transf_matrix[1][1] 0.018636 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006781 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004353 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 DMS A 1 201 361 DMS DMS . F 4 GOL B 1 201 204 GOL GOL . G 5 CIT B 1 202 396 CIT CIT . H 6 NAG C 1 201 201 NAG NAG . I 7 SO4 C 1 202 203 SO4 SO4 . J 4 GOL C 1 203 397 GOL GOL . K 3 DMS C 1 204 398 DMS DMS . L 4 GOL D 1 201 204 GOL GOL . M 6 NAG D 1 202 201 NAG NAG . N 7 SO4 D 1 203 203 SO4 SO4 . O 7 SO4 D 1 204 205 SO4 SO4 . P 8 HOH A 1 301 302 HOH HOH . P 8 HOH A 2 302 303 HOH HOH . P 8 HOH A 3 303 316 HOH HOH . P 8 HOH A 4 304 322 HOH HOH . P 8 HOH A 5 305 314 HOH HOH . P 8 HOH A 6 306 318 HOH HOH . P 8 HOH A 7 307 317 HOH HOH . P 8 HOH A 8 308 311 HOH HOH . P 8 HOH A 9 309 310 HOH HOH . P 8 HOH A 10 310 320 HOH HOH . P 8 HOH A 11 311 321 HOH HOH . P 8 HOH A 12 312 324 HOH HOH . P 8 HOH A 13 313 342 HOH HOH . P 8 HOH A 14 314 328 HOH HOH . P 8 HOH A 15 315 309 HOH HOH . P 8 HOH A 16 316 333 HOH HOH . P 8 HOH A 17 317 306 HOH HOH . P 8 HOH A 18 318 331 HOH HOH . P 8 HOH A 19 319 343 HOH HOH . P 8 HOH A 20 320 348 HOH HOH . P 8 HOH A 21 321 350 HOH HOH . P 8 HOH A 22 322 353 HOH HOH . P 8 HOH A 23 323 347 HOH HOH . Q 8 HOH B 1 301 7 HOH HOH . Q 8 HOH B 2 302 302 HOH HOH . Q 8 HOH B 3 303 306 HOH HOH . Q 8 HOH B 4 304 313 HOH HOH . Q 8 HOH B 5 305 338 HOH HOH . Q 8 HOH B 6 306 315 HOH HOH . Q 8 HOH B 7 307 335 HOH HOH . Q 8 HOH B 8 308 330 HOH HOH . Q 8 HOH B 9 309 311 HOH HOH . Q 8 HOH B 10 310 308 HOH HOH . Q 8 HOH B 11 311 307 HOH HOH . Q 8 HOH B 12 312 321 HOH HOH . Q 8 HOH B 13 313 325 HOH HOH . Q 8 HOH B 14 314 356 HOH HOH . Q 8 HOH B 15 315 333 HOH HOH . Q 8 HOH B 16 316 324 HOH HOH . Q 8 HOH B 17 317 336 HOH HOH . Q 8 HOH B 18 318 319 HOH HOH . Q 8 HOH B 19 319 334 HOH HOH . Q 8 HOH B 20 320 323 HOH HOH . Q 8 HOH B 21 321 329 HOH HOH . Q 8 HOH B 22 322 348 HOH HOH . Q 8 HOH B 23 323 320 HOH HOH . Q 8 HOH B 24 324 349 HOH HOH . Q 8 HOH B 25 325 347 HOH HOH . Q 8 HOH B 26 326 342 HOH HOH . Q 8 HOH B 27 327 337 HOH HOH . Q 8 HOH B 28 328 316 HOH HOH . Q 8 HOH B 29 329 343 HOH HOH . Q 8 HOH B 30 330 344 HOH HOH . Q 8 HOH B 31 331 355 HOH HOH . Q 8 HOH B 32 332 341 HOH HOH . Q 8 HOH B 33 333 351 HOH HOH . Q 8 HOH B 34 334 352 HOH HOH . Q 8 HOH B 35 335 345 HOH HOH . Q 8 HOH B 36 336 360 HOH HOH . Q 8 HOH B 37 337 359 HOH HOH . Q 8 HOH B 38 338 361 HOH HOH . Q 8 HOH B 39 339 358 HOH HOH . Q 8 HOH B 40 340 366 HOH HOH . Q 8 HOH B 41 341 364 HOH HOH . Q 8 HOH B 42 342 368 HOH HOH . Q 8 HOH B 43 343 369 HOH HOH . Q 8 HOH B 44 344 404 HOH HOH . Q 8 HOH B 45 345 363 HOH HOH . Q 8 HOH B 46 346 376 HOH HOH . Q 8 HOH B 47 347 365 HOH HOH . Q 8 HOH B 48 348 374 HOH HOH . Q 8 HOH B 49 349 357 HOH HOH . Q 8 HOH B 50 350 4 HOH HOH . Q 8 HOH B 51 351 389 HOH HOH . Q 8 HOH B 52 352 393 HOH HOH . Q 8 HOH B 53 353 395 HOH HOH . R 8 HOH C 1 301 304 HOH HOH . R 8 HOH C 2 302 5 HOH HOH . R 8 HOH C 3 303 318 HOH HOH . R 8 HOH C 4 304 308 HOH HOH . R 8 HOH C 5 305 321 HOH HOH . R 8 HOH C 6 306 320 HOH HOH . R 8 HOH C 7 307 313 HOH HOH . R 8 HOH C 8 308 319 HOH HOH . R 8 HOH C 9 309 347 HOH HOH . R 8 HOH C 10 310 328 HOH HOH . R 8 HOH C 11 311 316 HOH HOH . R 8 HOH C 12 312 326 HOH HOH . R 8 HOH C 13 313 307 HOH HOH . R 8 HOH C 14 314 325 HOH HOH . R 8 HOH C 15 315 334 HOH HOH . R 8 HOH C 16 316 327 HOH HOH . R 8 HOH C 17 317 343 HOH HOH . R 8 HOH C 18 318 349 HOH HOH . R 8 HOH C 19 319 333 HOH HOH . R 8 HOH C 20 320 335 HOH HOH . R 8 HOH C 21 321 315 HOH HOH . R 8 HOH C 22 322 352 HOH HOH . R 8 HOH C 23 323 322 HOH HOH . R 8 HOH C 24 324 337 HOH HOH . R 8 HOH C 25 325 341 HOH HOH . R 8 HOH C 26 326 323 HOH HOH . R 8 HOH C 27 327 331 HOH HOH . R 8 HOH C 28 328 342 HOH HOH . R 8 HOH C 29 329 340 HOH HOH . R 8 HOH C 30 330 330 HOH HOH . R 8 HOH C 31 331 350 HOH HOH . R 8 HOH C 32 332 355 HOH HOH . R 8 HOH C 33 333 354 HOH HOH . R 8 HOH C 34 334 357 HOH HOH . R 8 HOH C 35 335 362 HOH HOH . R 8 HOH C 36 336 351 HOH HOH . R 8 HOH C 37 337 360 HOH HOH . R 8 HOH C 38 338 371 HOH HOH . R 8 HOH C 39 339 358 HOH HOH . R 8 HOH C 40 340 359 HOH HOH . R 8 HOH C 41 341 368 HOH HOH . R 8 HOH C 42 342 373 HOH HOH . R 8 HOH C 43 343 369 HOH HOH . R 8 HOH C 44 344 378 HOH HOH . R 8 HOH C 45 345 365 HOH HOH . R 8 HOH C 46 346 382 HOH HOH . R 8 HOH C 47 347 381 HOH HOH . R 8 HOH C 48 348 395 HOH HOH . S 8 HOH D 1 301 2 HOH HOH . S 8 HOH D 2 302 317 HOH HOH . S 8 HOH D 3 303 310 HOH HOH . S 8 HOH D 4 304 305 HOH HOH . S 8 HOH D 5 305 306 HOH HOH . S 8 HOH D 6 306 320 HOH HOH . S 8 HOH D 7 307 308 HOH HOH . S 8 HOH D 8 308 327 HOH HOH . S 8 HOH D 9 309 313 HOH HOH . S 8 HOH D 10 310 316 HOH HOH . S 8 HOH D 11 311 304 HOH HOH . S 8 HOH D 12 312 309 HOH HOH . S 8 HOH D 13 313 351 HOH HOH . S 8 HOH D 14 314 314 HOH HOH . S 8 HOH D 15 315 340 HOH HOH . S 8 HOH D 16 316 325 HOH HOH . S 8 HOH D 17 317 318 HOH HOH . S 8 HOH D 18 318 333 HOH HOH . S 8 HOH D 19 319 315 HOH HOH . S 8 HOH D 20 320 311 HOH HOH . S 8 HOH D 21 321 323 HOH HOH . S 8 HOH D 22 322 319 HOH HOH . S 8 HOH D 23 323 324 HOH HOH . S 8 HOH D 24 324 332 HOH HOH . S 8 HOH D 25 325 317 HOH HOH . S 8 HOH D 26 326 391 HOH HOH . S 8 HOH D 27 327 330 HOH HOH . S 8 HOH D 28 328 346 HOH HOH . S 8 HOH D 29 329 353 HOH HOH . S 8 HOH D 30 330 341 HOH HOH . S 8 HOH D 31 331 344 HOH HOH . S 8 HOH D 32 332 336 HOH HOH . S 8 HOH D 33 333 343 HOH HOH . S 8 HOH D 34 334 339 HOH HOH . S 8 HOH D 35 335 337 HOH HOH . S 8 HOH D 36 336 368 HOH HOH . S 8 HOH D 37 337 328 HOH HOH . S 8 HOH D 38 338 334 HOH HOH . S 8 HOH D 39 339 348 HOH HOH . S 8 HOH D 40 340 354 HOH HOH . S 8 HOH D 41 341 345 HOH HOH . S 8 HOH D 42 342 355 HOH HOH . S 8 HOH D 43 343 358 HOH HOH . S 8 HOH D 44 344 361 HOH HOH . S 8 HOH D 45 345 359 HOH HOH . S 8 HOH D 46 346 365 HOH HOH . S 8 HOH D 47 347 352 HOH HOH . S 8 HOH D 48 348 357 HOH HOH . S 8 HOH D 49 349 364 HOH HOH . S 8 HOH D 50 350 362 HOH HOH . S 8 HOH D 51 351 371 HOH HOH . S 8 HOH D 52 352 360 HOH HOH . S 8 HOH D 53 353 379 HOH HOH . S 8 HOH D 54 354 366 HOH HOH . S 8 HOH D 55 355 373 HOH HOH . S 8 HOH D 56 356 363 HOH HOH . S 8 HOH D 57 357 370 HOH HOH . S 8 HOH D 58 358 372 HOH HOH . S 8 HOH D 59 359 375 HOH HOH . S 8 HOH D 60 360 384 HOH HOH . S 8 HOH D 61 361 381 HOH HOH . S 8 HOH D 62 362 374 HOH HOH . S 8 HOH D 63 363 369 HOH HOH . S 8 HOH D 64 364 380 HOH HOH . S 8 HOH D 65 365 377 HOH HOH . S 8 HOH D 66 366 399 HOH HOH . S 8 HOH D 67 367 396 HOH HOH . S 8 HOH D 68 368 402 HOH HOH . S 8 HOH D 69 369 405 HOH HOH . S 8 HOH D 70 370 401 HOH HOH . S 8 HOH D 71 371 397 HOH HOH . S 8 HOH D 72 372 406 HOH HOH . S 8 HOH D 73 373 407 HOH HOH . S 8 HOH D 74 374 408 HOH HOH . S 8 HOH D 75 375 412 HOH HOH . S 8 HOH D 76 376 409 HOH HOH . S 8 HOH D 77 377 413 HOH HOH . S 8 HOH D 78 378 415 HOH HOH . S 8 HOH D 79 379 416 HOH HOH . S 8 HOH D 80 380 420 HOH HOH . S 8 HOH D 81 381 6 HOH HOH . S 8 HOH D 82 382 418 HOH HOH . S 8 HOH D 83 383 422 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . L 4 12.104 44.097 22.133 0.83 41 ? C1 GOL 201 D 1 HETATM 2 O O1 GOL . . . L 4 12.299 42.721 21.853 1 39.33 ? O1 GOL 201 D 1 HETATM 3 C C2 GOL . . . L 4 11.829 44.245 23.653 0.63 41.61 ? C2 GOL 201 D 1 HETATM 4 O O2 GOL . . . L 4 12.874 43.836 24.465 0.82 44.09 ? O2 GOL 201 D 1 HETATM 5 C C3 GOL . . . L 4 11.313 45.723 23.859 0.27 40.03 ? C3 GOL 201 D 1 HETATM 6 O O3 GOL . . . L 4 12.372 46.591 24.08 1 44.93 ? O3 GOL 201 D 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #