data_8Q82
#
_model_server_result.job_id            ROAzv1Pbhj186XLuo0kHKw 
_model_server_result.datetime_utc      '2025-03-09 21:16:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8q82 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":403}' 
#
_entry.id    8Q82 
#
_exptl.entry_id    8Q82 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              178.183 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'methyl alpha-L-fucopyranoside' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.357 
_cell.angle_gamma         90 
_cell.entry_id            8Q82 
_cell.length_a            70.013 
_cell.length_b            82.859 
_cell.length_c            70.3 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8Q82 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 363 A ASN 363 1_555 J MG MG . B MG 403 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? 
metalc ? metalc2 G MG MG . A MG 405 1_555 L O HOH . B HOH 526 1_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? 
metalc ? metalc3 J MG MG . B MG 403 1_555 L O HOH . B HOH 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? 
#
_chem_comp.formula           'C7 H14 O5' 
_chem_comp.formula_weight    178.183 
_chem_comp.id                MFU 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'methyl alpha-L-fucopyranoside' 
_chem_comp.type              l-saccharide 
_chem_comp.pdbx_synonyms     'ALPHA-L-METHYL-FUCOSE;methyl 6-deoxy-alpha-L-galactopyranoside;methyl alpha-L-fucoside;methyl L-fucoside;methyl fucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MFU sing 237 n n 
C1 O1 MFU sing 238 n n 
C1 O5 MFU sing 239 n n 
C1 H1 MFU sing 240 n n 
C2 C3 MFU sing 241 n n 
C2 O2 MFU sing 242 n n 
C2 H2 MFU sing 243 n n 
C3 C4 MFU sing 244 n n 
C3 O3 MFU sing 245 n n 
C3 H3 MFU sing 246 n n 
C4 C5 MFU sing 247 n n 
C4 O4 MFU sing 248 n n 
C4 H4 MFU sing 249 n n 
C5 C6 MFU sing 250 n n 
C5 O5 MFU sing 251 n n 
C5 H5 MFU sing 252 n n 
C6 H61 MFU sing 253 n n 
C6 H62 MFU sing 254 n n 
C6 H63 MFU sing 255 n n 
O1 CM MFU sing 256 n n 
O2 HO2 MFU sing 257 n n 
O3 HO3 MFU sing 258 n n 
O4 HO4 MFU sing 259 n n 
CM HM1 MFU sing 260 n n 
CM HM2 MFU sing 261 n n 
CM HM3 MFU sing 262 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
MFU LFucp[1Me]a 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
MFU 1-methyl-a-L-fucopyranose 'COMMON NAME' GMML 1 
MFU o1-methyl-a-L-fucose 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
#
_atom_sites.entry_id                     8Q82 
_atom_sites.fract_transf_matrix[1][1]    0.014283 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003923 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012069 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014751 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MFU A 1 401 401 MFU MFU . 
D 2 MFU A 1 402 402 MFU MFU . 
E 2 MFU A 1 403 403 MFU MFU . 
F 3 CL A 1 404 1 CL CL . 
G 4 MG A 1 405 1 MG MG . 
H 2 MFU B 1 401 401 MFU MFU . 
I 3 CL B 1 402 2 CL CL . 
J 4 MG B 1 403 2 MG MG . 
K 5 HOH A 1 501 110 HOH HOH . 
K 5 HOH A 2 502 55 HOH HOH . 
K 5 HOH A 3 503 20 HOH HOH . 
K 5 HOH A 4 504 39 HOH HOH . 
K 5 HOH A 5 505 11 HOH HOH . 
K 5 HOH A 6 506 3 HOH HOH . 
K 5 HOH A 7 507 85 HOH HOH . 
K 5 HOH A 8 508 61 HOH HOH . 
K 5 HOH A 9 509 69 HOH HOH . 
K 5 HOH A 10 510 148 HOH HOH . 
K 5 HOH A 11 511 87 HOH HOH . 
K 5 HOH A 12 512 94 HOH HOH . 
K 5 HOH A 13 513 68 HOH HOH . 
K 5 HOH A 14 514 101 HOH HOH . 
K 5 HOH A 15 515 108 HOH HOH . 
K 5 HOH A 16 516 112 HOH HOH . 
K 5 HOH A 17 517 142 HOH HOH . 
K 5 HOH A 18 518 76 HOH HOH . 
K 5 HOH A 19 519 25 HOH HOH . 
K 5 HOH A 20 520 136 HOH HOH . 
K 5 HOH A 21 521 86 HOH HOH . 
K 5 HOH A 22 522 66 HOH HOH . 
K 5 HOH A 23 523 81 HOH HOH . 
K 5 HOH A 24 524 80 HOH HOH . 
K 5 HOH A 25 525 124 HOH HOH . 
K 5 HOH A 26 526 135 HOH HOH . 
K 5 HOH A 27 527 77 HOH HOH . 
K 5 HOH A 28 528 24 HOH HOH . 
K 5 HOH A 29 529 137 HOH HOH . 
K 5 HOH A 30 530 125 HOH HOH . 
K 5 HOH A 31 531 16 HOH HOH . 
K 5 HOH A 32 532 90 HOH HOH . 
K 5 HOH A 33 533 27 HOH HOH . 
K 5 HOH A 34 534 75 HOH HOH . 
K 5 HOH A 35 535 23 HOH HOH . 
K 5 HOH A 36 536 134 HOH HOH . 
K 5 HOH A 37 537 46 HOH HOH . 
K 5 HOH A 38 538 92 HOH HOH . 
K 5 HOH A 39 539 140 HOH HOH . 
K 5 HOH A 40 540 144 HOH HOH . 
K 5 HOH A 41 541 146 HOH HOH . 
K 5 HOH A 42 542 60 HOH HOH . 
K 5 HOH A 43 543 49 HOH HOH . 
K 5 HOH A 44 544 109 HOH HOH . 
K 5 HOH A 45 545 26 HOH HOH . 
K 5 HOH A 46 546 41 HOH HOH . 
K 5 HOH A 47 547 114 HOH HOH . 
K 5 HOH A 48 548 74 HOH HOH . 
K 5 HOH A 49 549 51 HOH HOH . 
K 5 HOH A 50 550 48 HOH HOH . 
K 5 HOH A 51 551 14 HOH HOH . 
K 5 HOH A 52 552 19 HOH HOH . 
K 5 HOH A 53 553 47 HOH HOH . 
K 5 HOH A 54 554 113 HOH HOH . 
K 5 HOH A 55 555 21 HOH HOH . 
K 5 HOH A 56 556 83 HOH HOH . 
K 5 HOH A 57 557 42 HOH HOH . 
K 5 HOH A 58 558 157 HOH HOH . 
K 5 HOH A 59 559 103 HOH HOH . 
K 5 HOH A 60 560 40 HOH HOH . 
K 5 HOH A 61 561 141 HOH HOH . 
K 5 HOH A 62 562 122 HOH HOH . 
K 5 HOH A 63 563 91 HOH HOH . 
K 5 HOH A 64 564 100 HOH HOH . 
K 5 HOH A 65 565 5 HOH HOH . 
K 5 HOH A 66 566 62 HOH HOH . 
K 5 HOH A 67 567 18 HOH HOH . 
K 5 HOH A 68 568 133 HOH HOH . 
K 5 HOH A 69 569 127 HOH HOH . 
K 5 HOH A 70 570 88 HOH HOH . 
K 5 HOH A 71 571 6 HOH HOH . 
K 5 HOH A 72 572 158 HOH HOH . 
K 5 HOH A 73 573 95 HOH HOH . 
K 5 HOH A 74 574 65 HOH HOH . 
K 5 HOH A 75 575 139 HOH HOH . 
K 5 HOH A 76 576 67 HOH HOH . 
K 5 HOH A 77 577 162 HOH HOH . 
L 5 HOH B 1 501 35 HOH HOH . 
L 5 HOH B 2 502 104 HOH HOH . 
L 5 HOH B 3 503 2 HOH HOH . 
L 5 HOH B 4 504 156 HOH HOH . 
L 5 HOH B 5 505 22 HOH HOH . 
L 5 HOH B 6 506 147 HOH HOH . 
L 5 HOH B 7 507 153 HOH HOH . 
L 5 HOH B 8 508 107 HOH HOH . 
L 5 HOH B 9 509 43 HOH HOH . 
L 5 HOH B 10 510 64 HOH HOH . 
L 5 HOH B 11 511 115 HOH HOH . 
L 5 HOH B 12 512 159 HOH HOH . 
L 5 HOH B 13 513 120 HOH HOH . 
L 5 HOH B 14 514 118 HOH HOH . 
L 5 HOH B 15 515 1 HOH HOH . 
L 5 HOH B 16 516 4 HOH HOH . 
L 5 HOH B 17 517 59 HOH HOH . 
L 5 HOH B 18 518 132 HOH HOH . 
L 5 HOH B 19 519 155 HOH HOH . 
L 5 HOH B 20 520 150 HOH HOH . 
L 5 HOH B 21 521 73 HOH HOH . 
L 5 HOH B 22 522 31 HOH HOH . 
L 5 HOH B 23 523 151 HOH HOH . 
L 5 HOH B 24 524 89 HOH HOH . 
L 5 HOH B 25 525 105 HOH HOH . 
L 5 HOH B 26 526 12 HOH HOH . 
L 5 HOH B 27 527 10 HOH HOH . 
L 5 HOH B 28 528 28 HOH HOH . 
L 5 HOH B 29 529 53 HOH HOH . 
L 5 HOH B 30 530 138 HOH HOH . 
L 5 HOH B 31 531 154 HOH HOH . 
L 5 HOH B 32 532 17 HOH HOH . 
L 5 HOH B 33 533 111 HOH HOH . 
L 5 HOH B 34 534 160 HOH HOH . 
L 5 HOH B 35 535 52 HOH HOH . 
L 5 HOH B 36 536 116 HOH HOH . 
L 5 HOH B 37 537 97 HOH HOH . 
L 5 HOH B 38 538 72 HOH HOH . 
L 5 HOH B 39 539 56 HOH HOH . 
L 5 HOH B 40 540 38 HOH HOH . 
L 5 HOH B 41 541 119 HOH HOH . 
L 5 HOH B 42 542 8 HOH HOH . 
L 5 HOH B 43 543 78 HOH HOH . 
L 5 HOH B 44 544 29 HOH HOH . 
L 5 HOH B 45 545 130 HOH HOH . 
L 5 HOH B 46 546 149 HOH HOH . 
L 5 HOH B 47 547 131 HOH HOH . 
L 5 HOH B 48 548 129 HOH HOH . 
L 5 HOH B 49 549 96 HOH HOH . 
L 5 HOH B 50 550 13 HOH HOH . 
L 5 HOH B 51 551 45 HOH HOH . 
L 5 HOH B 52 552 84 HOH HOH . 
L 5 HOH B 53 553 70 HOH HOH . 
L 5 HOH B 54 554 50 HOH HOH . 
L 5 HOH B 55 555 9 HOH HOH . 
L 5 HOH B 56 556 7 HOH HOH . 
L 5 HOH B 57 557 99 HOH HOH . 
L 5 HOH B 58 558 63 HOH HOH . 
L 5 HOH B 59 559 34 HOH HOH . 
L 5 HOH B 60 560 58 HOH HOH . 
L 5 HOH B 61 561 44 HOH HOH . 
L 5 HOH B 62 562 82 HOH HOH . 
L 5 HOH B 63 563 71 HOH HOH . 
L 5 HOH B 64 564 128 HOH HOH . 
L 5 HOH B 65 565 93 HOH HOH . 
L 5 HOH B 66 566 98 HOH HOH . 
L 5 HOH B 67 567 123 HOH HOH . 
L 5 HOH B 68 568 54 HOH HOH . 
L 5 HOH B 69 569 32 HOH HOH . 
L 5 HOH B 70 570 37 HOH HOH . 
L 5 HOH B 71 571 102 HOH HOH . 
L 5 HOH B 72 572 126 HOH HOH . 
L 5 HOH B 73 573 33 HOH HOH . 
L 5 HOH B 74 574 106 HOH HOH . 
L 5 HOH B 75 575 36 HOH HOH . 
L 5 HOH B 76 576 145 HOH HOH . 
L 5 HOH B 77 577 15 HOH HOH . 
L 5 HOH B 78 578 30 HOH HOH . 
L 5 HOH B 79 579 143 HOH HOH . 
L 5 HOH B 80 580 57 HOH HOH . 
L 5 HOH B 81 581 161 HOH HOH . 
L 5 HOH B 82 582 117 HOH HOH . 
L 5 HOH B 83 583 121 HOH HOH . 
L 5 HOH B 84 584 79 HOH HOH . 
L 5 HOH B 85 585 152 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MFU . . . E 2 5.854 -9.648 45.669 1 50.62 0 C1 MFU 403 A 1 
HETATM 2 C C2 MFU . . . E 2 5.128 -9.302 46.961 1 55.25 0 C2 MFU 403 A 1 
HETATM 3 C C3 MFU . . . E 2 5.438 -7.873 47.378 1 52.7 0 C3 MFU 403 A 1 
HETATM 4 C C4 MFU . . . E 2 5.226 -6.871 46.235 1 50.04 0 C4 MFU 403 A 1 
HETATM 5 C C5 MFU . . . E 2 5.93 -7.358 44.962 1 50.58 0 C5 MFU 403 A 1 
HETATM 6 C C6 MFU . . . E 2 5.683 -6.549 43.711 1 45.97 0 C6 MFU 403 A 1 
HETATM 7 O O1 MFU . . . E 2 7.225 -9.666 45.961 1 48.3 0 O1 MFU 403 A 1 
HETATM 8 O O2 MFU . . . E 2 5.488 -10.234 47.977 1 61.31 0 O2 MFU 403 A 1 
HETATM 9 O O3 MFU . . . E 2 4.59 -7.533 48.473 1 50.98 0 O3 MFU 403 A 1 
HETATM 10 O O4 MFU . . . E 2 3.825 -6.687 46.068 1 51.68 0 O4 MFU 403 A 1 
HETATM 11 O O5 MFU . . . E 2 5.504 -8.702 44.662 1 52.72 0 O5 MFU 403 A 1 
HETATM 12 C CM MFU . . . E 2 8.051 -10.056 44.865 1 44.99 0 CM MFU 403 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           12 
#