data_8Q8G
#
_model_server_result.job_id            06a-M1F1znhMikc_hsBkhQ 
_model_server_result.datetime_utc      '2024-11-20 04:24:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8q8g 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    8Q8G 
#
_exptl.entry_id    8Q8G 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.88 
_cell.angle_gamma         90 
_cell.entry_id            8Q8G 
_cell.length_a            39.977 
_cell.length_b            84.336 
_cell.length_c            81.99 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8Q8G 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 H N N 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 338 n n 
N HN1 SAH sing 339 n n 
N HN2 SAH sing 340 n n 
CA CB SAH sing 341 n n 
CA C SAH sing 342 n n 
CA HA SAH sing 343 n n 
CB CG SAH sing 344 n n 
CB HB1 SAH sing 345 n n 
CB HB2 SAH sing 346 n n 
CG SD SAH sing 347 n n 
CG HG1 SAH sing 348 n n 
CG HG2 SAH sing 349 n n 
SD C5' SAH sing 350 n n 
C O SAH doub 351 n n 
C OXT SAH sing 352 n n 
OXT HXT SAH sing 353 n n 
C5' C4' SAH sing 354 n n 
C5' "H5'1" SAH sing 355 n n 
C5' "H5'2" SAH sing 356 n n 
C4' O4' SAH sing 357 n n 
C4' C3' SAH sing 358 n n 
C4' H4' SAH sing 359 n n 
O4' C1' SAH sing 360 n n 
C3' O3' SAH sing 361 n n 
C3' C2' SAH sing 362 n n 
C3' H3' SAH sing 363 n n 
O3' HO3' SAH sing 364 n n 
C2' O2' SAH sing 365 n n 
C2' C1' SAH sing 366 n n 
C2' H2' SAH sing 367 n n 
O2' HO2' SAH sing 368 n n 
C1' N9 SAH sing 369 n n 
C1' H1' SAH sing 370 n n 
N9 C8 SAH sing 371 n y 
N9 C4 SAH sing 372 n y 
C8 N7 SAH doub 373 n y 
C8 H8 SAH sing 374 n n 
N7 C5 SAH sing 375 n y 
C5 C6 SAH sing 376 n y 
C5 C4 SAH doub 377 n y 
C6 N6 SAH sing 378 n n 
C6 N1 SAH doub 379 n y 
N6 HN61 SAH sing 380 n n 
N6 HN62 SAH sing 381 n n 
N1 C2 SAH sing 382 n y 
C2 N3 SAH doub 383 n y 
C2 H2 SAH sing 384 n n 
N3 C4 SAH sing 385 n y 
#
_atom_sites.entry_id                     8Q8G 
_atom_sites.fract_transf_matrix[1][1]    0.025014 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003018 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011857 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012285 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SAH A 1 501 501 SAH SAH . 
D 3 O94 A 1 502 502 O94 O94 . 
E 4 SO4 A 1 503 503 SO4 SO4 . 
F 5 GOL A 1 504 504 GOL GOL . 
G 5 GOL A 1 505 505 GOL GOL . 
H 2 SAH B 1 501 501 SAH SAH . 
I 3 O94 B 1 502 502 O94 O94 . 
J 4 SO4 B 1 503 503 SO4 SO4 . 
K 4 SO4 B 1 504 504 SO4 SO4 . 
L 6 HOH A 1 601 601 HOH HOH . 
L 6 HOH A 2 602 602 HOH HOH . 
L 6 HOH A 3 603 603 HOH HOH . 
L 6 HOH A 4 604 604 HOH HOH . 
L 6 HOH A 5 605 605 HOH HOH . 
L 6 HOH A 6 606 606 HOH HOH . 
L 6 HOH A 7 607 607 HOH HOH . 
L 6 HOH A 8 608 608 HOH HOH . 
L 6 HOH A 9 609 609 HOH HOH . 
L 6 HOH A 10 610 610 HOH HOH . 
L 6 HOH A 11 611 611 HOH HOH . 
L 6 HOH A 12 612 612 HOH HOH . 
L 6 HOH A 13 613 613 HOH HOH . 
L 6 HOH A 14 614 614 HOH HOH . 
L 6 HOH A 15 615 615 HOH HOH . 
L 6 HOH A 16 616 616 HOH HOH . 
L 6 HOH A 17 617 617 HOH HOH . 
L 6 HOH A 18 618 618 HOH HOH . 
L 6 HOH A 19 619 619 HOH HOH . 
L 6 HOH A 20 620 620 HOH HOH . 
L 6 HOH A 21 621 621 HOH HOH . 
L 6 HOH A 22 622 622 HOH HOH . 
L 6 HOH A 23 623 623 HOH HOH . 
L 6 HOH A 24 624 624 HOH HOH . 
L 6 HOH A 25 625 625 HOH HOH . 
L 6 HOH A 26 626 626 HOH HOH . 
L 6 HOH A 27 627 627 HOH HOH . 
L 6 HOH A 28 628 628 HOH HOH . 
L 6 HOH A 29 629 629 HOH HOH . 
L 6 HOH A 30 630 630 HOH HOH . 
L 6 HOH A 31 631 631 HOH HOH . 
L 6 HOH A 32 632 632 HOH HOH . 
L 6 HOH A 33 633 633 HOH HOH . 
L 6 HOH A 34 634 634 HOH HOH . 
L 6 HOH A 35 635 635 HOH HOH . 
L 6 HOH A 36 636 636 HOH HOH . 
L 6 HOH A 37 637 637 HOH HOH . 
L 6 HOH A 38 638 638 HOH HOH . 
L 6 HOH A 39 639 639 HOH HOH . 
L 6 HOH A 40 640 640 HOH HOH . 
L 6 HOH A 41 641 641 HOH HOH . 
L 6 HOH A 42 642 642 HOH HOH . 
L 6 HOH A 43 643 643 HOH HOH . 
L 6 HOH A 44 644 644 HOH HOH . 
L 6 HOH A 45 645 645 HOH HOH . 
L 6 HOH A 46 646 646 HOH HOH . 
L 6 HOH A 47 647 647 HOH HOH . 
L 6 HOH A 48 648 648 HOH HOH . 
M 6 HOH B 1 601 601 HOH HOH . 
M 6 HOH B 2 602 602 HOH HOH . 
M 6 HOH B 3 603 603 HOH HOH . 
M 6 HOH B 4 604 604 HOH HOH . 
M 6 HOH B 5 605 605 HOH HOH . 
M 6 HOH B 6 606 606 HOH HOH . 
M 6 HOH B 7 607 607 HOH HOH . 
M 6 HOH B 8 608 608 HOH HOH . 
M 6 HOH B 9 609 609 HOH HOH . 
M 6 HOH B 10 610 610 HOH HOH . 
M 6 HOH B 11 611 611 HOH HOH . 
M 6 HOH B 12 612 612 HOH HOH . 
M 6 HOH B 13 613 613 HOH HOH . 
M 6 HOH B 14 614 614 HOH HOH . 
M 6 HOH B 15 615 615 HOH HOH . 
M 6 HOH B 16 616 616 HOH HOH . 
M 6 HOH B 17 617 617 HOH HOH . 
M 6 HOH B 18 618 618 HOH HOH . 
M 6 HOH B 19 619 619 HOH HOH . 
M 6 HOH B 20 620 620 HOH HOH . 
M 6 HOH B 21 621 621 HOH HOH . 
M 6 HOH B 22 622 622 HOH HOH . 
M 6 HOH B 23 623 623 HOH HOH . 
M 6 HOH B 24 624 624 HOH HOH . 
M 6 HOH B 25 625 625 HOH HOH . 
M 6 HOH B 26 626 626 HOH HOH . 
M 6 HOH B 27 627 627 HOH HOH . 
M 6 HOH B 28 628 628 HOH HOH . 
M 6 HOH B 29 629 629 HOH HOH . 
M 6 HOH B 30 630 630 HOH HOH . 
M 6 HOH B 31 631 631 HOH HOH . 
M 6 HOH B 32 632 632 HOH HOH . 
M 6 HOH B 33 633 633 HOH HOH . 
M 6 HOH B 34 634 634 HOH HOH . 
M 6 HOH B 35 635 635 HOH HOH . 
M 6 HOH B 36 636 636 HOH HOH . 
M 6 HOH B 37 637 637 HOH HOH . 
M 6 HOH B 38 638 638 HOH HOH . 
M 6 HOH B 39 639 639 HOH HOH . 
M 6 HOH B 40 640 640 HOH HOH . 
M 6 HOH B 41 641 641 HOH HOH . 
M 6 HOH B 42 642 642 HOH HOH . 
M 6 HOH B 43 643 643 HOH HOH . 
M 6 HOH B 44 644 644 HOH HOH . 
M 6 HOH B 45 645 645 HOH HOH . 
M 6 HOH B 46 646 646 HOH HOH . 
M 6 HOH B 47 647 647 HOH HOH . 
M 6 HOH B 48 648 648 HOH HOH . 
M 6 HOH B 49 649 649 HOH HOH . 
M 6 HOH B 50 650 650 HOH HOH . 
M 6 HOH B 51 651 651 HOH HOH . 
M 6 HOH B 52 652 652 HOH HOH . 
M 6 HOH B 53 653 653 HOH HOH . 
M 6 HOH B 54 654 654 HOH HOH . 
M 6 HOH B 55 655 655 HOH HOH . 
M 6 HOH B 56 656 656 HOH HOH . 
M 6 HOH B 57 657 657 HOH HOH . 
M 6 HOH B 58 658 658 HOH HOH . 
M 6 HOH B 59 659 659 HOH HOH . 
M 6 HOH B 60 660 660 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . C 2 8.109 8.334 51.241 1 18.69 ? N SAH 501 A 1 
HETATM 2 C CA SAH . . . C 2 8.909 9.335 51.944 1 19.12 ? CA SAH 501 A 1 
HETATM 3 C CB SAH . . . C 2 10.409 9.212 51.64 1 17.51 ? CB SAH 501 A 1 
HETATM 4 C CG SAH . . . C 2 10.859 9.067 50.182 1 20.94 ? CG SAH 501 A 1 
HETATM 5 S SD SAH . . . C 2 12.673 8.945 49.979 1 19.31 ? SD SAH 501 A 1 
HETATM 6 C C SAH . . . C 2 8.393 10.708 51.572 1 22.37 ? C SAH 501 A 1 
HETATM 7 O O SAH . . . C 2 8.673 11.675 52.271 1 26.64 ? O SAH 501 A 1 
HETATM 8 O OXT SAH . . . C 2 7.672 10.886 50.582 1 22.81 ? OXT SAH 501 A 1 
HETATM 9 C C5' SAH . . . C 2 12.665 7.234 49.4 1 19.94 ? C5' SAH 501 A 1 
HETATM 10 C C4' SAH . . . C 2 12.679 6.277 50.581 1 25.06 ? C4' SAH 501 A 1 
HETATM 11 O O4' SAH . . . C 2 12.455 4.972 50.109 1 23.99 ? O4' SAH 501 A 1 
HETATM 12 C C3' SAH . . . C 2 13.974 6.253 51.399 1 25.61 ? C3' SAH 501 A 1 
HETATM 13 O O3' SAH . . . C 2 13.754 6.674 52.739 1 27.98 ? O3' SAH 501 A 1 
HETATM 14 C C2' SAH . . . C 2 14.39 4.786 51.324 1 26.81 ? C2' SAH 501 A 1 
HETATM 15 O O2' SAH . . . C 2 14.938 4.22 52.492 1 30.37 ? O2' SAH 501 A 1 
HETATM 16 C C1' SAH . . . C 2 13.115 4.068 50.962 1 23.59 ? C1' SAH 501 A 1 
HETATM 17 N N9 SAH . . . C 2 13.451 2.811 50.271 1 27.91 ? N9 SAH 501 A 1 
HETATM 18 C C8 SAH . . . C 2 14.352 2.652 49.237 1 22.3 ? C8 SAH 501 A 1 
HETATM 19 N N7 SAH . . . C 2 14.366 1.347 48.885 1 20.57 ? N7 SAH 501 A 1 
HETATM 20 C C5 SAH . . . C 2 13.501 0.682 49.675 1 22.55 ? C5 SAH 501 A 1 
HETATM 21 C C6 SAH . . . C 2 13.146 -0.645 49.741 1 21.43 ? C6 SAH 501 A 1 
HETATM 22 N N6 SAH . . . C 2 13.701 -1.518 48.902 1 20.31 ? N6 SAH 501 A 1 
HETATM 23 N N1 SAH . . . C 2 12.209 -1.043 50.673 1 24.45 ? N1 SAH 501 A 1 
HETATM 24 C C2 SAH . . . C 2 11.637 -0.131 51.533 1 22.24 ? C2 SAH 501 A 1 
HETATM 25 N N3 SAH . . . C 2 12.004 1.188 51.471 1 21.15 ? N3 SAH 501 A 1 
HETATM 26 C C4 SAH . . . C 2 12.91 1.586 50.553 1 25.19 ? C4 SAH 501 A 1 
#
_model_server_stats.io_time_ms              72 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           26 
#