data_8Q8I
#
_model_server_result.job_id            hQhL-qjN9eXn4KwJDAyRfA 
_model_server_result.datetime_utc      '2024-11-14 05:48:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8q8i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":311}' 
#
_entry.id    8Q8I 
#
_exptl.entry_id    8Q8I 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.32 
_cell.angle_gamma         90 
_cell.entry_id            8Q8I 
_cell.length_a            126.579 
_cell.length_b            50.456 
_cell.length_c            51.543 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8Q8I 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 K N N 
? 6 L N N 
? 6 M N N 
? 6 N N N 
? 6 O N N 
? 6 P N N 
? 6 Q N N 
? 6 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ASP 75 A ASP 73 1_555 F MG MG . A MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? 
metalc ? metalc2 A OD1 ASN 100 A ASN 98 1_555 G MG MG . A MG 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? 
metalc ? metalc3 A OG SER 108 A SER 106 1_555 E MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.873 ? 
metalc ? metalc4 A O ILE 227 A ILE 225 1_555 E MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? 
metalc ? metalc5 A OD1 ASP 242 A ASP 240 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.888 ? 
metalc ? metalc6 A O GLU 244 A GLU 242 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.105 ? 
metalc ? metalc7 A O ILE 258 A ILE 256 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.864 ? 
metalc ? metalc8 A O LYS 261 A LYS 259 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? 
metalc ? metalc9 D CA CA . A CA 303 1_555 T O22 BCN . A BCN 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? 
metalc ? metalc10 D CA CA . A CA 303 1_555 T O6 BCN . A BCN 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? 
metalc ? metalc11 D CA CA . A CA 303 1_555 T O4 BCN . A BCN 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? 
metalc ? metalc12 I MG MG . A MG 308 1_555 U O HOH . A HOH 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 106 n n 
C1 C2 EDO sing 107 n n 
C1 H11 EDO sing 108 n n 
C1 H12 EDO sing 109 n n 
O1 HO1 EDO sing 110 n n 
C2 O2 EDO sing 111 n n 
C2 H21 EDO sing 112 n n 
C2 H22 EDO sing 113 n n 
O2 HO2 EDO sing 114 n n 
#
_atom_sites.entry_id                     8Q8I 
_atom_sites.fract_transf_matrix[1][1]    0.0079 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000876 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019819 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01952 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 301 1 GOL GOL . 
C 3 CA A 1 302 3 CA CA . 
D 3 CA A 1 303 4 CA CA . 
E 4 MG A 1 304 1 MG MG . 
F 4 MG A 1 305 2 MG MG . 
G 4 MG A 1 306 3 MG MG . 
H 4 MG A 1 307 4 MG MG . 
I 4 MG A 1 308 5 MG MG . 
J 5 O5R A 1 309 1 O5R GFR . 
K 6 EDO A 1 310 1 EDO EDO . 
L 6 EDO A 1 311 2 EDO EDO . 
M 6 EDO A 1 312 3 EDO EDO . 
N 6 EDO A 1 313 4 EDO EDO . 
O 6 EDO A 1 314 5 EDO EDO . 
P 6 EDO A 1 315 6 EDO EDO . 
Q 6 EDO A 1 316 7 EDO EDO . 
R 6 EDO A 1 317 8 EDO EDO . 
S 7 PEG A 1 318 1 PEG PEG . 
T 8 BCN A 1 319 1 BCN BCN . 
U 9 HOH A 1 401 17 HOH HOH . 
U 9 HOH A 2 402 13 HOH HOH . 
U 9 HOH A 3 403 49 HOH HOH . 
U 9 HOH A 4 404 15 HOH HOH . 
U 9 HOH A 5 405 52 HOH HOH . 
U 9 HOH A 6 406 53 HOH HOH . 
U 9 HOH A 7 407 42 HOH HOH . 
U 9 HOH A 8 408 10 HOH HOH . 
U 9 HOH A 9 409 39 HOH HOH . 
U 9 HOH A 10 410 35 HOH HOH . 
U 9 HOH A 11 411 14 HOH HOH . 
U 9 HOH A 12 412 2 HOH HOH . 
U 9 HOH A 13 413 12 HOH HOH . 
U 9 HOH A 14 414 78 HOH HOH . 
U 9 HOH A 15 415 50 HOH HOH . 
U 9 HOH A 16 416 26 HOH HOH . 
U 9 HOH A 17 417 29 HOH HOH . 
U 9 HOH A 18 418 43 HOH HOH . 
U 9 HOH A 19 419 57 HOH HOH . 
U 9 HOH A 20 420 40 HOH HOH . 
U 9 HOH A 21 421 86 HOH HOH . 
U 9 HOH A 22 422 6 HOH HOH . 
U 9 HOH A 23 423 34 HOH HOH . 
U 9 HOH A 24 424 45 HOH HOH . 
U 9 HOH A 25 425 88 HOH HOH . 
U 9 HOH A 26 426 11 HOH HOH . 
U 9 HOH A 27 427 24 HOH HOH . 
U 9 HOH A 28 428 9 HOH HOH . 
U 9 HOH A 29 429 25 HOH HOH . 
U 9 HOH A 30 430 54 HOH HOH . 
U 9 HOH A 31 431 38 HOH HOH . 
U 9 HOH A 32 432 1 HOH HOH . 
U 9 HOH A 33 433 63 HOH HOH . 
U 9 HOH A 34 434 3 HOH HOH . 
U 9 HOH A 35 435 37 HOH HOH . 
U 9 HOH A 36 436 31 HOH HOH . 
U 9 HOH A 37 437 4 HOH HOH . 
U 9 HOH A 38 438 67 HOH HOH . 
U 9 HOH A 39 439 51 HOH HOH . 
U 9 HOH A 40 440 47 HOH HOH . 
U 9 HOH A 41 441 36 HOH HOH . 
U 9 HOH A 42 442 56 HOH HOH . 
U 9 HOH A 43 443 32 HOH HOH . 
U 9 HOH A 44 444 44 HOH HOH . 
U 9 HOH A 45 445 62 HOH HOH . 
U 9 HOH A 46 446 80 HOH HOH . 
U 9 HOH A 47 447 23 HOH HOH . 
U 9 HOH A 48 448 70 HOH HOH . 
U 9 HOH A 49 449 55 HOH HOH . 
U 9 HOH A 50 450 89 HOH HOH . 
U 9 HOH A 51 451 30 HOH HOH . 
U 9 HOH A 52 452 79 HOH HOH . 
U 9 HOH A 53 453 65 HOH HOH . 
U 9 HOH A 54 454 27 HOH HOH . 
U 9 HOH A 55 455 33 HOH HOH . 
U 9 HOH A 56 456 28 HOH HOH . 
U 9 HOH A 57 457 48 HOH HOH . 
U 9 HOH A 58 458 71 HOH HOH . 
U 9 HOH A 59 459 46 HOH HOH . 
U 9 HOH A 60 460 18 HOH HOH . 
U 9 HOH A 61 461 16 HOH HOH . 
U 9 HOH A 62 462 59 HOH HOH . 
U 9 HOH A 63 463 83 HOH HOH . 
U 9 HOH A 64 464 41 HOH HOH . 
U 9 HOH A 65 465 8 HOH HOH . 
U 9 HOH A 66 466 21 HOH HOH . 
U 9 HOH A 67 467 19 HOH HOH . 
U 9 HOH A 68 468 7 HOH HOH . 
U 9 HOH A 69 469 91 HOH HOH . 
U 9 HOH A 70 470 20 HOH HOH . 
U 9 HOH A 71 471 61 HOH HOH . 
U 9 HOH A 72 472 73 HOH HOH . 
U 9 HOH A 73 473 87 HOH HOH . 
U 9 HOH A 74 474 5 HOH HOH . 
U 9 HOH A 75 475 94 HOH HOH . 
U 9 HOH A 76 476 58 HOH HOH . 
U 9 HOH A 77 477 72 HOH HOH . 
U 9 HOH A 78 478 84 HOH HOH . 
U 9 HOH A 79 479 22 HOH HOH . 
U 9 HOH A 80 480 95 HOH HOH . 
U 9 HOH A 81 481 90 HOH HOH . 
U 9 HOH A 82 482 60 HOH HOH . 
U 9 HOH A 83 483 92 HOH HOH . 
U 9 HOH A 84 484 85 HOH HOH . 
U 9 HOH A 85 485 76 HOH HOH . 
U 9 HOH A 86 486 75 HOH HOH . 
U 9 HOH A 87 487 82 HOH HOH . 
U 9 HOH A 88 488 68 HOH HOH . 
U 9 HOH A 89 489 66 HOH HOH . 
U 9 HOH A 90 490 93 HOH HOH . 
U 9 HOH A 91 491 81 HOH HOH . 
U 9 HOH A 92 492 64 HOH HOH . 
U 9 HOH A 93 493 74 HOH HOH . 
U 9 HOH A 94 494 77 HOH HOH . 
U 9 HOH A 95 495 69 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . L 6 42.974 -20.789 3.021 1 30.08 ? C1 EDO 311 A 1 
HETATM 2 O O1 EDO . . . L 6 44.05 -20.166 3.732 1 34.58 ? O1 EDO 311 A 1 
HETATM 3 C C2 EDO . . . L 6 41.748 -19.883 3.048 1 34.4 ? C2 EDO 311 A 1 
HETATM 4 O O2 EDO . . . L 6 42.062 -18.622 2.446 1 33.88 ? O2 EDO 311 A 1 
HETATM 5 H H11 EDO . . . L 6 43.273 -20.975 1.987 1 36.56 ? H11 EDO 311 A 1 
HETATM 6 H H12 EDO . . . L 6 42.734 -21.75 3.48 1 36.56 ? H12 EDO 311 A 1 
HETATM 7 H HO1 EDO . . . L 6 44.824 -20.746 3.717 1 41.96 ? HO1 EDO 311 A 1 
HETATM 8 H H21 EDO . . . L 6 40.927 -20.357 2.506 1 41.75 ? H21 EDO 311 A 1 
HETATM 9 H H22 EDO . . . L 6 41.425 -19.73 4.08 1 41.75 ? H22 EDO 311 A 1 
HETATM 10 H HO2 EDO . . . L 6 41.277 -18.058 2.451 1 41.13 ? HO2 EDO 311 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           10 
#