data_8Q8O
#
_model_server_result.job_id            uK5aKxY3g2kVunhvPWOWZA 
_model_server_result.datetime_utc      '2024-11-12 20:43:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8q8o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    8Q8O 
#
_exptl.entry_id    8Q8O 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              556.353 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            Tb-Xo4 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8Q8O 
_cell.length_a            68.862 
_cell.length_b            68.862 
_cell.length_c            281.073 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8Q8O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    'P 65 2 (x,y,z+1/12)' 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
A,C,E 1 2 
B,D,F 2 1 
B,D,F 2 3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_565 x,x-y+1,-z+5/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -34.431 59.636241 234.2275 
3 'crystal symmetry operation' 12_555 x,x-y,-z+5/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 234.2275 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OE1 GLU 79 B GLU 112 1_555 D TB 7MT . B 7MT 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.887 ? 
metalc ? metalc2 B OE2 GLU 79 B GLU 112 1_555 D TB 7MT . B 7MT 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? 
#
_chem_comp.formula           'C20 H23 N5 O4 Tb 5' 
_chem_comp.formula_weight    556.353 
_chem_comp.id                7MT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              Tb-Xo4 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C21 C20 7MT doub 1 n y 
C21 C22 7MT sing 2 n y 
C10 C13 7MT doub 3 n y 
C10 C30 7MT sing 4 n n 
C10 N17 7MT sing 5 n y 
C11 C19 7MT doub 6 n y 
C11 C29 7MT sing 7 n n 
C11 N23 7MT sing 8 n y 
C01 C03 7MT sing 9 n n 
C01 N02 7MT sing 10 n n 
C03 N09 7MT sing 11 n n 
C04 C05 7MT sing 12 n n 
C04 N02 7MT sing 13 n n 
C05 N06 7MT sing 14 n n 
C07 C08 7MT sing 15 n n 
C07 N06 7MT sing 16 n n 
C08 N09 7MT sing 17 n n 
C13 C14 7MT sing 18 n y 
C14 C15 7MT doub 19 n y 
C15 C16 7MT sing 20 n y 
C16 C18 7MT sing 21 n n 
C16 N17 7MT doub 22 n y 
C18 O27 7MT sing 23 n n 
C18 O28 7MT doub 24 n n 
C19 C20 7MT sing 25 n y 
C22 C24 7MT sing 26 n n 
C22 N23 7MT doub 27 n y 
C24 O25 7MT doub 28 n n 
C24 O26 7MT sing 29 n n 
C29 N09 7MT sing 30 n n 
C30 N02 7MT sing 31 n n 
N23 TB 7MT sing 32 n n 
C21 H211 7MT sing 33 n n 
C01 H012 7MT sing 34 n n 
C01 H011 7MT sing 35 n n 
C03 H031 7MT sing 36 n n 
C03 H032 7MT sing 37 n n 
C04 H042 7MT sing 38 n n 
C04 H041 7MT sing 39 n n 
C05 H051 7MT sing 40 n n 
C05 H052 7MT sing 41 n n 
C07 H072 7MT sing 42 n n 
C07 H071 7MT sing 43 n n 
C08 H081 7MT sing 44 n n 
C08 H082 7MT sing 45 n n 
C13 H131 7MT sing 46 n n 
C14 H141 7MT sing 47 n n 
C15 H151 7MT sing 48 n n 
C19 H191 7MT sing 49 n n 
C20 H201 7MT sing 50 n n 
C29 H292 7MT sing 51 n n 
C29 H291 7MT sing 52 n n 
C30 H302 7MT sing 53 n n 
C30 H301 7MT sing 54 n n 
N02 TB 7MT sing 55 n n 
N06 TB 7MT sing 56 n n 
N06 H061 7MT sing 57 n n 
N09 TB 7MT sing 58 n n 
O26 TB 7MT sing 59 n n 
N17 TB 7MT sing 60 n n 
O27 TB 7MT sing 61 n n 
#
_atom_sites.entry_id                     8Q8O 
_atom_sites.fract_transf_matrix[1][1]    0.014522 
_atom_sites.fract_transf_matrix[1][2]    0.008384 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016768 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003558 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 201 201 GOL GOL . 
D 3 7MT B 1 201 502 7MT 7MT . 
E 4 HOH A 1 301 5 HOH HOH . 
E 4 HOH A 2 302 8 HOH HOH . 
E 4 HOH A 3 303 13 HOH HOH . 
E 4 HOH A 4 304 21 HOH HOH . 
E 4 HOH A 5 305 28 HOH HOH . 
E 4 HOH A 6 306 4 HOH HOH . 
E 4 HOH A 7 307 16 HOH HOH . 
E 4 HOH A 8 308 9 HOH HOH . 
E 4 HOH A 9 309 19 HOH HOH . 
E 4 HOH A 10 310 14 HOH HOH . 
E 4 HOH A 11 311 6 HOH HOH . 
E 4 HOH A 12 312 26 HOH HOH . 
E 4 HOH A 13 313 24 HOH HOH . 
E 4 HOH A 14 314 30 HOH HOH . 
E 4 HOH A 15 315 3 HOH HOH . 
E 4 HOH A 16 316 29 HOH HOH . 
F 4 HOH B 1 301 11 HOH HOH . 
F 4 HOH B 2 302 1 HOH HOH . 
F 4 HOH B 3 303 10 HOH HOH . 
F 4 HOH B 4 304 12 HOH HOH . 
F 4 HOH B 5 305 15 HOH HOH . 
F 4 HOH B 6 306 2 HOH HOH . 
F 4 HOH B 7 307 23 HOH HOH . 
F 4 HOH B 8 308 31 HOH HOH . 
F 4 HOH B 9 309 18 HOH HOH . 
F 4 HOH B 10 310 32 HOH HOH . 
F 4 HOH B 11 311 22 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C21 7MT . . . D 3 69.091 47.789 123.571 1 89.67 ? C21 7MT 201 B 1 
HETATM 2 C C10 7MT . . . D 3 72.553 42.273 127.896 1 80.44 ? C10 7MT 201 B 1 
HETATM 3 C C11 7MT . . . D 3 71.34 47.346 124.984 1 89.54 ? C11 7MT 201 B 1 
HETATM 4 C C01 7MT . . . D 3 74.527 43.868 126.083 1 71.57 ? C01 7MT 201 B 1 
HETATM 5 C C03 7MT . . . D 3 74.158 45.364 126.562 1 53.52 ? C03 7MT 201 B 1 
HETATM 6 C C04 7MT . . . D 3 74.054 42.079 124.515 1 60.97 ? C04 7MT 201 B 1 
HETATM 7 C C05 7MT . . . D 3 73.941 42.949 123.258 1 57.85 ? C05 7MT 201 B 1 
HETATM 8 C C07 7MT . . . D 3 73.287 45.292 123.146 1 61.59 ? C07 7MT 201 B 1 
HETATM 9 C C08 7MT . . . D 3 73.978 45.965 124.004 1 71.53 ? C08 7MT 201 B 1 
HETATM 10 C C13 7MT . . . D 3 72.803 41.683 129.223 1 85.6 ? C13 7MT 201 B 1 
HETATM 11 C C14 7MT . . . D 3 72.068 41.91 130.343 1 87.35 ? C14 7MT 201 B 1 
HETATM 12 C C15 7MT . . . D 3 71.109 42.736 130.015 1 86.88 ? C15 7MT 201 B 1 
HETATM 13 C C16 7MT . . . D 3 70.777 43.343 128.834 1 97.39 ? C16 7MT 201 B 1 
HETATM 14 C C18 7MT . . . D 3 69.697 44.241 128.551 1 77.47 ? C18 7MT 201 B 1 
HETATM 15 C C19 7MT . . . D 3 71.063 48.614 124.61 1 86.65 ? C19 7MT 201 B 1 
HETATM 16 C C20 7MT . . . D 3 69.925 48.808 123.905 1 79.46 ? C20 7MT 201 B 1 
HETATM 17 C C22 7MT . . . D 3 69.347 46.459 123.929 1 84.36 ? C22 7MT 201 B 1 
HETATM 18 C C24 7MT . . . D 3 68.437 45.3 123.573 1 75.62 ? C24 7MT 201 B 1 
HETATM 19 C C29 7MT . . . D 3 72.629 46.92 125.839 1 75.92 ? C29 7MT 201 B 1 
HETATM 20 C C30 7MT . . . D 3 73.467 41.876 126.825 1 67.62 ? C30 7MT 201 B 1 
HETATM 21 N N02 7MT . . . D 3 73.567 42.975 125.866 1 76.03 ? N02 7MT 201 B 1 
HETATM 22 N N06 7MT . . . D 3 72.915 44.019 123.448 1 62.27 ? N06 7MT 201 B 1 
HETATM 23 N N09 7MT . . . D 3 73.108 45.633 125.39 1 78.38 ? N09 7MT 201 B 1 
HETATM 24 N N17 7MT . . . D 3 71.505 43.11 127.774 1 96.56 ? N17 7MT 201 B 1 
HETATM 25 N N23 7MT . . . D 3 70.486 46.316 124.645 1 81.11 ? N23 7MT 201 B 1 
HETATM 26 O O25 7MT . . . D 3 67.187 45.421 123.675 1 67.53 ? O25 7MT 201 B 1 
HETATM 27 O O26 7MT . . . D 3 68.749 44.236 123.56 1 77.8 ? O26 7MT 201 B 1 
HETATM 28 O O27 7MT . . . D 3 69.854 45.141 127.531 1 77.47 ? O27 7MT 201 B 1 
HETATM 29 O O28 7MT . . . D 3 68.388 43.836 128.611 1 66.66 ? O28 7MT 201 B 1 
HETATM 30 TB TB 7MT . . . D 3 71.189 44.056 125.412 1 70.7 ? TB 7MT 201 B 1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           30 
#