data_8Q8Q
#
_model_server_result.job_id            RLmxDwn6N9wXypQklIzB2A 
_model_server_result.datetime_utc      '2024-12-27 03:22:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8q8q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":601}' 
#
_entry.id    8Q8Q 
#
_exptl.entry_id    8Q8Q 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              661.89 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1R)-2-{[(R)-(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(DODECANOYLOXY)METHYL]ETHYL (9Z)-OCTADEC-9-ENOATE' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8Q8Q 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8Q8Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 F N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
#
_chem_comp.formula           'C35 H68 N O8 P' 
_chem_comp.formula_weight    661.89 
_chem_comp.id                LOP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1R)-2-{[(R)-(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(DODECANOYLOXY)METHYL]ETHYL (9Z)-OCTADEC-9-ENOATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'LAURYL OLEYL PHOSPHATIDYL ETHANOLAMINE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C1 LOP sing 192 n n 
N1 HN11 LOP sing 193 n n 
N1 HN12 LOP sing 194 n n 
C1 C2 LOP sing 195 n n 
C1 H11 LOP sing 196 n n 
C1 H12 LOP sing 197 n n 
C2 O1 LOP sing 198 n n 
C2 H21 LOP sing 199 n n 
C2 H22 LOP sing 200 n n 
O1 P1 LOP sing 201 n n 
P1 O2 LOP sing 202 n n 
P1 O3 LOP sing 203 n n 
P1 O4 LOP doub 204 n n 
O2 C3 LOP sing 205 n n 
O3 HO3 LOP sing 206 n n 
C3 C4 LOP sing 207 n n 
C3 H31 LOP sing 208 n n 
C3 H32 LOP sing 209 n n 
C4 C5 LOP sing 210 n n 
C4 O5 LOP sing 211 n n 
C4 H4 LOP sing 212 n n 
C5 O6 LOP sing 213 n n 
C5 H51 LOP sing 214 n n 
C5 H52 LOP sing 215 n n 
O5 C6 LOP sing 216 n n 
O6 C24 LOP sing 217 n n 
C6 O7 LOP doub 218 n n 
C6 C7 LOP sing 219 n n 
C7 C8 LOP sing 220 n n 
C7 H71 LOP sing 221 n n 
C7 H72 LOP sing 222 n n 
C8 C9 LOP sing 223 n n 
C8 H81 LOP sing 224 n n 
C8 H82 LOP sing 225 n n 
C9 C10 LOP sing 226 n n 
C9 H91 LOP sing 227 n n 
C9 H92 LOP sing 228 n n 
C10 C11 LOP sing 229 n n 
C10 H101 LOP sing 230 n n 
C10 H102 LOP sing 231 n n 
C11 C12 LOP sing 232 n n 
C11 H111 LOP sing 233 n n 
C11 H112 LOP sing 234 n n 
C12 C13 LOP sing 235 n n 
C12 H121 LOP sing 236 n n 
C12 H122 LOP sing 237 n n 
C13 C14 LOP sing 238 n n 
C13 H131 LOP sing 239 n n 
C13 H132 LOP sing 240 n n 
C14 C15 LOP doub 241 z n 
C14 H14 LOP sing 242 n n 
C15 C16 LOP sing 243 n n 
C15 H15 LOP sing 244 n n 
C16 C17 LOP sing 245 n n 
C16 H161 LOP sing 246 n n 
C16 H162 LOP sing 247 n n 
C17 C18 LOP sing 248 n n 
C17 H171 LOP sing 249 n n 
C17 H172 LOP sing 250 n n 
C18 C19 LOP sing 251 n n 
C18 H181 LOP sing 252 n n 
C18 H182 LOP sing 253 n n 
C19 C20 LOP sing 254 n n 
C19 H191 LOP sing 255 n n 
C19 H192 LOP sing 256 n n 
C20 C21 LOP sing 257 n n 
C20 H201 LOP sing 258 n n 
C20 H202 LOP sing 259 n n 
C21 C22 LOP sing 260 n n 
C21 H211 LOP sing 261 n n 
C21 H212 LOP sing 262 n n 
C22 C23 LOP sing 263 n n 
C22 H221 LOP sing 264 n n 
C22 H222 LOP sing 265 n n 
C23 H231 LOP sing 266 n n 
C23 H232 LOP sing 267 n n 
C23 H233 LOP sing 268 n n 
C24 O8 LOP doub 269 n n 
C24 C25 LOP sing 270 n n 
C25 C26 LOP sing 271 n n 
C25 H251 LOP sing 272 n n 
C25 H252 LOP sing 273 n n 
C26 C27 LOP sing 274 n n 
C26 H261 LOP sing 275 n n 
C26 H262 LOP sing 276 n n 
C27 C28 LOP sing 277 n n 
C27 H271 LOP sing 278 n n 
C27 H272 LOP sing 279 n n 
C28 C29 LOP sing 280 n n 
C28 H281 LOP sing 281 n n 
C28 H282 LOP sing 282 n n 
C29 C30 LOP sing 283 n n 
C29 H291 LOP sing 284 n n 
C29 H292 LOP sing 285 n n 
C30 C31 LOP sing 286 n n 
C30 H301 LOP sing 287 n n 
C30 H302 LOP sing 288 n n 
C31 C32 LOP sing 289 n n 
C31 H311 LOP sing 290 n n 
C31 H312 LOP sing 291 n n 
C32 C33 LOP sing 292 n n 
C32 H321 LOP sing 293 n n 
C32 H322 LOP sing 294 n n 
C33 C34 LOP sing 295 n n 
C33 H331 LOP sing 296 n n 
C33 H332 LOP sing 297 n n 
C34 C35 LOP sing 298 n n 
C34 H341 LOP sing 299 n n 
C34 H342 LOP sing 300 n n 
C35 H351 LOP sing 301 n n 
C35 H352 LOP sing 302 n n 
C35 H353 LOP sing 303 n n 
#
_atom_sites.entry_id                     8Q8Q 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 LOP A 1 601 501 LOP LOP . 
G 3 MG A 1 602 601 MG MG . 
H 3 MG A 1 603 602 MG MG . 
I 3 MG A 1 604 603 MG MG . 
J 2 LOP B 1 601 501 LOP LOP . 
K 2 LOP C 1 601 501 LOP LOP . 
L 2 LOP D 1 601 501 LOP LOP . 
M 2 LOP E 1 601 501 LOP LOP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 LOP . . . M 2 165.349 189.73 193.55 1 40.58 ? N1 LOP 601 E 1 
HETATM 2 C C1 LOP . . . M 2 165.763 190.073 192.187 1 39.72 ? C1 LOP 601 E 1 
HETATM 3 C C2 LOP . . . M 2 166.555 188.895 191.573 1 41.61 ? C2 LOP 601 E 1 
HETATM 4 O O1 LOP . . . M 2 165.934 187.667 191.903 1 46.64 ? O1 LOP 601 E 1 
HETATM 5 P P1 LOP . . . M 2 164.59 187.202 191.047 1 68.36 ? P1 LOP 601 E 1 
HETATM 6 O O2 LOP . . . M 2 164.343 185.558 191.175 1 47.06 ? O2 LOP 601 E 1 
HETATM 7 O O3 LOP . . . M 2 164.773 187.567 189.589 1 49.45 ? O3 LOP 601 E 1 
HETATM 8 O O4 LOP . . . M 2 163.374 187.925 191.59 1 49.62 ? O4 LOP 601 E 1 
HETATM 9 C C3 LOP . . . M 2 165.13 184.8 192.08 1 38.61 ? C3 LOP 601 E 1 
HETATM 10 C C4 LOP . . . M 2 164.65 185.057 193.515 1 39.99 ? C4 LOP 601 E 1 
HETATM 11 C C5 LOP . . . M 2 163.736 183.91 193.985 1 40.47 ? C5 LOP 601 E 1 
HETATM 12 O O5 LOP . . . M 2 165.724 185.222 194.407 1 43.94 ? O5 LOP 601 E 1 
HETATM 13 O O6 LOP . . . M 2 164.073 183.558 195.312 1 45.21 ? O6 LOP 601 E 1 
HETATM 14 C C6 LOP . . . M 2 166.901 184.439 194.213 1 40.96 ? C6 LOP 601 E 1 
HETATM 15 O O7 LOP . . . M 2 166.869 183.259 194.337 1 43.44 ? O7 LOP 601 E 1 
HETATM 16 C C7 LOP . . . M 2 168.249 185.128 193.864 1 38.09 ? C7 LOP 601 E 1 
HETATM 17 C C8 LOP . . . M 2 168.16 186.652 194.181 1 38.65 ? C8 LOP 601 E 1 
HETATM 18 C C9 LOP . . . M 2 168.172 186.883 195.725 1 42.11 ? C9 LOP 601 E 1 
HETATM 19 C C10 LOP . . . M 2 167.285 188.121 196.061 1 43.66 ? C10 LOP 601 E 1 
HETATM 20 C C11 LOP . . . M 2 166.849 188.064 197.565 1 41.91 ? C11 LOP 601 E 1 
HETATM 21 C C12 LOP . . . M 2 167.053 189.464 198.215 1 41.23 ? C12 LOP 601 E 1 
HETATM 22 C C13 LOP . . . M 2 168.565 189.795 198.239 1 42.71 ? C13 LOP 601 E 1 
HETATM 23 C C14 LOP . . . M 2 168.804 191.132 197.5 1 44.04 ? C14 LOP 601 E 1 
HETATM 24 C C15 LOP . . . M 2 170.04 191.224 197.013 1 39.89 ? C15 LOP 601 E 1 
HETATM 25 C C16 LOP . . . M 2 171.157 191.961 196.247 1 40.18 ? C16 LOP 601 E 1 
HETATM 26 C C17 LOP . . . M 2 171.641 193.188 197.058 1 42.69 ? C17 LOP 601 E 1 
HETATM 27 C C18 LOP . . . M 2 171.835 192.801 198.549 1 42.85 ? C18 LOP 601 E 1 
HETATM 28 C C19 LOP . . . M 2 172.225 194.066 199.356 1 44.24 ? C19 LOP 601 E 1 
HETATM 29 C C20 LOP . . . M 2 173.763 194.295 199.244 1 43.29 ? C20 LOP 601 E 1 
HETATM 30 C C21 LOP . . . M 2 174.449 193.934 200.595 1 40.13 ? C21 LOP 601 E 1 
HETATM 31 C C22 LOP . . . M 2 173.75 194.7 201.755 1 41.99 ? C22 LOP 601 E 1 
HETATM 32 C C23 LOP . . . M 2 174.054 193.99 203.098 1 43.06 ? C23 LOP 601 E 1 
HETATM 33 C C24 LOP . . . M 2 163.383 184.302 196.311 1 48.14 ? C24 LOP 601 E 1 
HETATM 34 O O8 LOP . . . M 2 162.352 184.834 196.051 1 46.86 ? O8 LOP 601 E 1 
HETATM 35 C C25 LOP . . . M 2 163.975 184.424 197.733 1 44.66 ? C25 LOP 601 E 1 
HETATM 36 C C26 LOP . . . M 2 165.032 183.306 197.953 1 39.56 ? C26 LOP 601 E 1 
HETATM 37 C C27 LOP . . . M 2 165.729 183.508 199.325 1 34.76 ? C27 LOP 601 E 1 
HETATM 38 C C28 LOP . . . M 2 166.64 184.769 199.27 1 40.37 ? C28 LOP 601 E 1 
HETATM 39 C C29 LOP . . . M 2 168.107 184.364 199.579 1 38.91 ? C29 LOP 601 E 1 
HETATM 40 C C30 LOP . . . M 2 168.361 184.454 201.114 1 38.59 ? C30 LOP 601 E 1 
HETATM 41 C C31 LOP . . . M 2 168.098 185.906 201.609 1 40.8 ? C31 LOP 601 E 1 
HETATM 42 C C32 LOP . . . M 2 168.999 186.197 202.838 1 37.81 ? C32 LOP 601 E 1 
HETATM 43 C C33 LOP . . . M 2 168.333 185.638 204.118 1 39.57 ? C33 LOP 601 E 1 
HETATM 44 C C34 LOP . . . M 2 166.941 186.287 204.3 1 41.57 ? C34 LOP 601 E 1 
HETATM 45 C C35 LOP . . . M 2 166.28 185.743 205.583 1 41.82 ? C35 LOP 601 E 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           45 
#