data_8Q9W # _model_server_result.job_id flJSMI2UN0Aq9i3thhQpSQ _model_server_result.datetime_utc '2024-11-13 07:37:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8q9w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":502}' # _entry.id 8Q9W # _exptl.entry_id 8Q9W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.67 _cell.angle_gamma 90 _cell.entry_id 8Q9W _cell.length_a 40.463 _cell.length_b 84.086 _cell.length_c 85.344 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8Q9W _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 8Q9W _atom_sites.fract_transf_matrix[1][1] 0.024714 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004213 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011893 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011886 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SFG A 1 501 501 SFG SFG . D 3 SO4 A 1 502 1 SO4 SO4 . E 2 SFG B 1 501 501 SFG SFG . F 4 GNP B 1 502 502 GNP GNP . G 5 HOH A 1 601 107 HOH HOH . G 5 HOH A 2 602 13 HOH HOH . G 5 HOH A 3 603 81 HOH HOH . G 5 HOH A 4 604 76 HOH HOH . G 5 HOH A 5 605 63 HOH HOH . G 5 HOH A 6 606 9 HOH HOH . G 5 HOH A 7 607 10 HOH HOH . G 5 HOH A 8 608 125 HOH HOH . G 5 HOH A 9 609 43 HOH HOH . G 5 HOH A 10 610 52 HOH HOH . G 5 HOH A 11 611 2 HOH HOH . G 5 HOH A 12 612 1 HOH HOH . G 5 HOH A 13 613 60 HOH HOH . G 5 HOH A 14 614 17 HOH HOH . G 5 HOH A 15 615 20 HOH HOH . G 5 HOH A 16 616 15 HOH HOH . G 5 HOH A 17 617 65 HOH HOH . G 5 HOH A 18 618 87 HOH HOH . G 5 HOH A 19 619 21 HOH HOH . G 5 HOH A 20 620 35 HOH HOH . G 5 HOH A 21 621 41 HOH HOH . G 5 HOH A 22 622 56 HOH HOH . G 5 HOH A 23 623 75 HOH HOH . G 5 HOH A 24 624 33 HOH HOH . G 5 HOH A 25 625 48 HOH HOH . G 5 HOH A 26 626 108 HOH HOH . G 5 HOH A 27 627 74 HOH HOH . G 5 HOH A 28 628 96 HOH HOH . G 5 HOH A 29 629 19 HOH HOH . G 5 HOH A 30 630 12 HOH HOH . G 5 HOH A 31 631 24 HOH HOH . G 5 HOH A 32 632 94 HOH HOH . G 5 HOH A 33 633 29 HOH HOH . G 5 HOH A 34 634 50 HOH HOH . G 5 HOH A 35 635 8 HOH HOH . G 5 HOH A 36 636 61 HOH HOH . G 5 HOH A 37 637 4 HOH HOH . G 5 HOH A 38 638 92 HOH HOH . G 5 HOH A 39 639 93 HOH HOH . G 5 HOH A 40 640 68 HOH HOH . G 5 HOH A 41 641 22 HOH HOH . G 5 HOH A 42 642 23 HOH HOH . G 5 HOH A 43 643 37 HOH HOH . G 5 HOH A 44 644 124 HOH HOH . G 5 HOH A 45 645 62 HOH HOH . G 5 HOH A 46 646 98 HOH HOH . G 5 HOH A 47 647 89 HOH HOH . G 5 HOH A 48 648 64 HOH HOH . G 5 HOH A 49 649 90 HOH HOH . G 5 HOH A 50 650 59 HOH HOH . G 5 HOH A 51 651 106 HOH HOH . G 5 HOH A 52 652 120 HOH HOH . G 5 HOH A 53 653 54 HOH HOH . G 5 HOH A 54 654 86 HOH HOH . G 5 HOH A 55 655 14 HOH HOH . G 5 HOH A 56 656 38 HOH HOH . G 5 HOH A 57 657 67 HOH HOH . H 5 HOH B 1 601 97 HOH HOH . H 5 HOH B 2 602 5 HOH HOH . H 5 HOH B 3 603 3 HOH HOH . H 5 HOH B 4 604 66 HOH HOH . H 5 HOH B 5 605 77 HOH HOH . H 5 HOH B 6 606 6 HOH HOH . H 5 HOH B 7 607 114 HOH HOH . H 5 HOH B 8 608 7 HOH HOH . H 5 HOH B 9 609 103 HOH HOH . H 5 HOH B 10 610 80 HOH HOH . H 5 HOH B 11 611 16 HOH HOH . H 5 HOH B 12 612 36 HOH HOH . H 5 HOH B 13 613 31 HOH HOH . H 5 HOH B 14 614 18 HOH HOH . H 5 HOH B 15 615 99 HOH HOH . H 5 HOH B 16 616 44 HOH HOH . H 5 HOH B 17 617 26 HOH HOH . H 5 HOH B 18 618 70 HOH HOH . H 5 HOH B 19 619 25 HOH HOH . H 5 HOH B 20 620 58 HOH HOH . H 5 HOH B 21 621 42 HOH HOH . H 5 HOH B 22 622 27 HOH HOH . H 5 HOH B 23 623 119 HOH HOH . H 5 HOH B 24 624 115 HOH HOH . H 5 HOH B 25 625 85 HOH HOH . H 5 HOH B 26 626 118 HOH HOH . H 5 HOH B 27 627 91 HOH HOH . H 5 HOH B 28 628 34 HOH HOH . H 5 HOH B 29 629 28 HOH HOH . H 5 HOH B 30 630 55 HOH HOH . H 5 HOH B 31 631 72 HOH HOH . H 5 HOH B 32 632 11 HOH HOH . H 5 HOH B 33 633 30 HOH HOH . H 5 HOH B 34 634 83 HOH HOH . H 5 HOH B 35 635 78 HOH HOH . H 5 HOH B 36 636 110 HOH HOH . H 5 HOH B 37 637 49 HOH HOH . H 5 HOH B 38 638 45 HOH HOH . H 5 HOH B 39 639 112 HOH HOH . H 5 HOH B 40 640 71 HOH HOH . H 5 HOH B 41 641 82 HOH HOH . H 5 HOH B 42 642 100 HOH HOH . H 5 HOH B 43 643 88 HOH HOH . H 5 HOH B 44 644 109 HOH HOH . H 5 HOH B 45 645 84 HOH HOH . H 5 HOH B 46 646 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . F 4 3.024 -19.431 16.562 0.88 128.67 ? PG GNP 502 B 1 HETATM 2 O O1G GNP . . . F 4 3.373 -20.9 16.621 0.88 84.7 ? O1G GNP 502 B 1 HETATM 3 O O2G GNP . . . F 4 2.529 -18.968 17.914 0.88 88.06 ? O2G GNP 502 B 1 HETATM 4 O O3G GNP . . . F 4 4.243 -18.632 16.156 0.88 85.84 ? O3G GNP 502 B 1 HETATM 5 N N3B GNP . . . F 4 1.781 -19.171 15.429 0.88 110.81 ? N3B GNP 502 B 1 HETATM 6 P PB GNP . . . F 4 1.912 -19.712 13.821 0.88 143.21 ? PB GNP 502 B 1 HETATM 7 O O1B GNP . . . F 4 1.769 -21.215 13.763 0.88 110.49 ? O1B GNP 502 B 1 HETATM 8 O O2B GNP . . . F 4 3.233 -19.287 13.216 0.88 93.37 ? O2B GNP 502 B 1 HETATM 9 O O3A GNP . . . F 4 0.698 -18.978 12.995 0.88 107.64 ? O3A GNP 502 B 1 HETATM 10 P PA GNP . . . F 4 -0.488 -19.747 12.161 0.88 128.12 ? PA GNP 502 B 1 HETATM 11 O O1A GNP . . . F 4 -0.064 -21.129 11.719 0.88 87.45 ? O1A GNP 502 B 1 HETATM 12 O O2A GNP . . . F 4 -1.747 -19.827 12.991 0.88 98.34 ? O2A GNP 502 B 1 HETATM 13 O O5' GNP . . . F 4 -0.753 -18.832 10.829 0.88 95.8 ? O5' GNP 502 B 1 HETATM 14 C C5' GNP . . . F 4 -1.217 -19.522 9.719 0.88 74.32 ? C5' GNP 502 B 1 HETATM 15 C C4' GNP . . . F 4 -1.065 -18.61 8.472 0.88 62.01 ? C4' GNP 502 B 1 HETATM 16 O O4' GNP . . . F 4 0.107 -19.197 7.642 0.88 66.7 ? O4' GNP 502 B 1 HETATM 17 C C3' GNP . . . F 4 -2.135 -18.723 7.782 0.88 68.06 ? C3' GNP 502 B 1 HETATM 18 O O3' GNP . . . F 4 -2.943 -17.512 7.86 0.88 52.13 ? O3' GNP 502 B 1 HETATM 19 C C2' GNP . . . F 4 -1.688 -19.06 6.216 0.88 62.4 ? C2' GNP 502 B 1 HETATM 20 O O2' GNP . . . F 4 -1.715 -17.863 5.379 0.88 49.27 ? O2' GNP 502 B 1 HETATM 21 C C1' GNP . . . F 4 -0.507 -19.558 6.263 0.88 58.09 ? C1' GNP 502 B 1 HETATM 22 N N9 GNP . . . F 4 -0.561 -21.023 5.976 0.88 62.9 ? N9 GNP 502 B 1 HETATM 23 C C8 GNP . . . F 4 -0.771 -21.617 7.16 0.88 66.53 ? C8 GNP 502 B 1 HETATM 24 N N7 GNP . . . F 4 -0.84 -22.942 6.961 0.88 65.58 ? N7 GNP 502 B 1 HETATM 25 C C5 GNP . . . F 4 -0.669 -23.165 5.651 0.88 45.97 ? C5 GNP 502 B 1 HETATM 26 C C6 GNP . . . F 4 -0.637 -24.296 4.867 0.88 56.08 ? C6 GNP 502 B 1 HETATM 27 O O6 GNP . . . F 4 -0.785 -25.357 5.371 0.88 60.56 ? O6 GNP 502 B 1 HETATM 28 N N1 GNP . . . F 4 -0.441 -24.187 3.558 0.88 53.01 ? N1 GNP 502 B 1 HETATM 29 C C2 GNP . . . F 4 -0.278 -22.965 2.995 0.88 49.09 ? C2 GNP 502 B 1 HETATM 30 N N2 GNP . . . F 4 -0.067 -22.804 1.571 0.88 38.6 ? N2 GNP 502 B 1 HETATM 31 N N3 GNP . . . F 4 -0.306 -21.879 3.765 0.88 67.58 ? N3 GNP 502 B 1 HETATM 32 C C4 GNP . . . F 4 -0.505 -21.983 5.073 0.88 49.35 ? C4 GNP 502 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 42 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #