data_8QA5
#
_model_server_result.job_id            FiF7wdhTnfM3jaGVQ3iqJw 
_model_server_result.datetime_utc      '2024-11-22 20:11:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8qa5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":702}' 
#
_entry.id    8QA5 
#
_exptl.entry_id    8QA5 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8QA5 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8QA5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 366 n n 
N HN1 SAH sing 367 n n 
N HN2 SAH sing 368 n n 
CA CB SAH sing 369 n n 
CA C SAH sing 370 n n 
CA HA SAH sing 371 n n 
CB CG SAH sing 372 n n 
CB HB1 SAH sing 373 n n 
CB HB2 SAH sing 374 n n 
CG SD SAH sing 375 n n 
CG HG1 SAH sing 376 n n 
CG HG2 SAH sing 377 n n 
SD C5' SAH sing 378 n n 
C O SAH doub 379 n n 
C OXT SAH sing 380 n n 
OXT HXT SAH sing 381 n n 
C5' C4' SAH sing 382 n n 
C5' "H5'1" SAH sing 383 n n 
C5' "H5'2" SAH sing 384 n n 
C4' O4' SAH sing 385 n n 
C4' C3' SAH sing 386 n n 
C4' H4' SAH sing 387 n n 
O4' C1' SAH sing 388 n n 
C3' O3' SAH sing 389 n n 
C3' C2' SAH sing 390 n n 
C3' H3' SAH sing 391 n n 
O3' HO3' SAH sing 392 n n 
C2' O2' SAH sing 393 n n 
C2' C1' SAH sing 394 n n 
C2' H2' SAH sing 395 n n 
O2' HO2' SAH sing 396 n n 
C1' N9 SAH sing 397 n n 
C1' H1' SAH sing 398 n n 
N9 C8 SAH sing 399 n y 
N9 C4 SAH sing 400 n y 
C8 N7 SAH doub 401 n y 
C8 H8 SAH sing 402 n n 
N7 C5 SAH sing 403 n y 
C5 C6 SAH sing 404 n y 
C5 C4 SAH doub 405 n y 
C6 N6 SAH sing 406 n n 
C6 N1 SAH doub 407 n y 
N6 HN61 SAH sing 408 n n 
N6 HN62 SAH sing 409 n n 
N1 C2 SAH sing 410 n y 
C2 N3 SAH doub 411 n y 
C2 H2 SAH sing 412 n n 
N3 C4 SAH sing 413 n y 
#
_atom_sites.entry_id                     8QA5 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 701 700 FAD FAD . 
D 3 SAH A 1 702 702 SAH SAH . 
E 3 SAH B 1 701 702 SAH SAH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . D 3 105.562 100.926 113.024 1 20 ? N SAH 702 A 1 
HETATM 2 C CA SAH . . . D 3 105.558 102.179 112.315 1 20 ? CA SAH 702 A 1 
HETATM 3 C CB SAH . . . D 3 104.283 102.884 112.646 1 20 ? CB SAH 702 A 1 
HETATM 4 C CG SAH . . . D 3 103.111 102.16 113.28 1 20 ? CG SAH 702 A 1 
HETATM 5 S SD SAH . . . D 3 102.593 101.119 112.046 1 20 ? SD SAH 702 A 1 
HETATM 6 C C SAH . . . D 3 106.748 103.042 112.695 1 20 ? C SAH 702 A 1 
HETATM 7 O O SAH . . . D 3 106.807 103.925 113.579 1 20 ? O SAH 702 A 1 
HETATM 8 O OXT SAH . . . D 3 107.604 102.627 111.927 1 20 ? OXT SAH 702 A 1 
HETATM 9 C C5' SAH . . . D 3 100.891 101.136 112.493 1 20 ? C5' SAH 702 A 1 
HETATM 10 C C4' SAH . . . D 3 100.571 100.345 113.829 1 20 ? C4' SAH 702 A 1 
HETATM 11 O O4' SAH . . . D 3 99.226 99.906 113.841 1 20 ? O4' SAH 702 A 1 
HETATM 12 C C3' SAH . . . D 3 101.299 99.035 113.929 1 20 ? C3' SAH 702 A 1 
HETATM 13 O O3' SAH . . . D 3 102.207 99.103 115.027 1 20 ? O3' SAH 702 A 1 
HETATM 14 C C2' SAH . . . D 3 100.212 97.984 114.11 1 20 ? C2' SAH 702 A 1 
HETATM 15 O O2' SAH . . . D 3 100.66 96.992 115.003 1 20 ? O2' SAH 702 A 1 
HETATM 16 C C1' SAH . . . D 3 99.077 98.791 114.661 1 20 ? C1' SAH 702 A 1 
HETATM 17 N N9 SAH . . . D 3 97.714 98.152 114.598 1 20 ? N9 SAH 702 A 1 
HETATM 18 C C8 SAH . . . D 3 97.291 97.175 113.774 1 20 ? C8 SAH 702 A 1 
HETATM 19 N N7 SAH . . . D 3 96.003 96.828 113.994 1 20 ? N7 SAH 702 A 1 
HETATM 20 C C5 SAH . . . D 3 95.562 97.588 114.999 1 20 ? C5 SAH 702 A 1 
HETATM 21 C C6 SAH . . . D 3 94.284 97.723 115.727 1 20 ? C6 SAH 702 A 1 
HETATM 22 N N6 SAH . . . D 3 93.215 96.956 115.409 1 20 ? N6 SAH 702 A 1 
HETATM 23 N N1 SAH . . . D 3 94.228 98.635 116.715 1 20 ? N1 SAH 702 A 1 
HETATM 24 C C2 SAH . . . D 3 95.291 99.394 117.03 1 20 ? C2 SAH 702 A 1 
HETATM 25 N N3 SAH . . . D 3 96.481 99.323 116.408 1 20 ? N3 SAH 702 A 1 
HETATM 26 C C4 SAH . . . D 3 96.684 98.452 115.396 1 20 ? C4 SAH 702 A 1 
HETATM 27 H H2 SAH . . . D 3 95.182 100.111 117.835 1 20 ? H2 SAH 702 A 1 
HETATM 28 H HN1 SAH . . . D 3 105.865 100.113 112.67 1 20 ? HN1 SAH 702 A 1 
HETATM 29 H HN2 SAH . . . D 3 105.254 100.923 113.984 1 20 ? HN2 SAH 702 A 1 
HETATM 30 H HA SAH . . . D 3 105.582 101.991 111.233 1 20 ? HA SAH 702 A 1 
HETATM 31 H HB1 SAH . . . D 3 103.915 103.324 111.718 1 20 ? HB1 SAH 702 A 1 
HETATM 32 H HB2 SAH . . . D 3 104.517 103.723 113.3 1 20 ? HB2 SAH 702 A 1 
HETATM 33 H HG1 SAH . . . D 3 102.324 102.869 113.541 1 20 ? HG1 SAH 702 A 1 
HETATM 34 H HG2 SAH . . . D 3 103.398 101.606 114.174 1 20 ? HG2 SAH 702 A 1 
HETATM 35 H "H5'1" SAH . . . D 3 100.31 100.695 111.681 1 20 ? "H5'1" SAH 702 A 1 
HETATM 36 H "H5'2" SAH . . . D 3 100.56 102.17 112.605 1 20 ? "H5'2" SAH 702 A 1 
HETATM 37 H H4' SAH . . . D 3 100.796 100.968 114.706 1 20 ? H4' SAH 702 A 1 
HETATM 38 H H3' SAH . . . D 3 101.835 98.83 112.993 1 20 ? H3' SAH 702 A 1 
HETATM 39 H HO3' SAH . . . D 3 101.765 98.926 115.856 1 20 ? HO3' SAH 702 A 1 
HETATM 40 H H2' SAH . . . D 3 99.938 97.561 113.134 1 20 ? H2' SAH 702 A 1 
HETATM 41 H HO2' SAH . . . D 3 100.176 96.216 114.767 1 20 ? HO2' SAH 702 A 1 
HETATM 42 H H1' SAH . . . D 3 99.316 99.062 115.698 1 20 ? H1' SAH 702 A 1 
HETATM 43 H H8 SAH . . . D 3 97.912 96.724 113.011 1 20 ? H8 SAH 702 A 1 
HETATM 44 H HN61 SAH . . . D 3 92.348 97.061 115.916 1 20 ? HN61 SAH 702 A 1 
HETATM 45 H HN62 SAH . . . D 3 93.286 96.28 114.662 1 20 ? HN62 SAH 702 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          15 
_model_server_stats.element_count           45 
#