data_8QAP # _model_server_result.job_id MS6aO-2C6yWIvwocxr71qA _model_server_result.datetime_utc '2024-10-19 00:50:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qap # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 8QAP # _exptl.entry_id 8QAP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 317.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[4-(3,6,6-trimethyl-4-oxidanylidene-5,7-dihydro-2~{H}-isoindol-1-yl)-1,3-thiazol-2-yl]guanidine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8QAP _cell.length_a 37.101 _cell.length_b 44.369 _cell.length_c 78.005 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QAP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H19 N5 O S' _chem_comp.formula_weight 317.409 _chem_comp.id Q9U _chem_comp.mon_nstd_flag . _chem_comp.name 2-[4-(3,6,6-trimethyl-4-oxidanylidene-5,7-dihydro-2~{H}-isoindol-1-yl)-1,3-thiazol-2-yl]guanidine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O21 C20 Q9U doub 286 n n C20 C19 Q9U sing 287 n n C20 C22 Q9U sing 288 n n C19 C16 Q9U sing 289 n n C01 C02 Q9U sing 290 n n C22 C02 Q9U doub 291 n y C22 C14 Q9U sing 292 n y C02 N03 Q9U sing 293 n y C16 C17 Q9U sing 294 n n C16 C18 Q9U sing 295 n n C16 C15 Q9U sing 296 n n C14 C15 Q9U sing 297 n n C14 C04 Q9U doub 298 n y N03 C04 Q9U sing 299 n y C04 C05 Q9U sing 300 n n C05 N13 Q9U sing 301 n y C05 C06 Q9U doub 302 n y N13 C08 Q9U doub 303 n y C06 S07 Q9U sing 304 n y N11 C10 Q9U sing 305 n n C08 S07 Q9U sing 306 n y C08 N09 Q9U sing 307 n n C10 N09 Q9U doub 308 n n C10 N12 Q9U sing 309 n n C17 H172 Q9U sing 310 n n C17 H171 Q9U sing 311 n n C17 H173 Q9U sing 312 n n C18 H183 Q9U sing 313 n n C18 H181 Q9U sing 314 n n C18 H182 Q9U sing 315 n n C19 H192 Q9U sing 316 n n C19 H191 Q9U sing 317 n n C01 H013 Q9U sing 318 n n C01 H012 Q9U sing 319 n n C01 H011 Q9U sing 320 n n C06 H061 Q9U sing 321 n n C15 H151 Q9U sing 322 n n C15 H152 Q9U sing 323 n n N03 H031 Q9U sing 324 n n N11 H112 Q9U sing 325 n n N11 H111 Q9U sing 326 n n N12 H121 Q9U sing 327 n n N12 H122 Q9U sing 328 n n # _atom_sites.entry_id 8QAP _atom_sites.fract_transf_matrix[1][1] 0.026953 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022538 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01282 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Q9U A 1 201 201 Q9U 438 . C 3 EDO A 1 202 301 EDO EDO . D 3 EDO A 1 203 401 EDO EDO . E 4 HOH A 1 301 68 HOH HOH . E 4 HOH A 2 302 80 HOH HOH . E 4 HOH A 3 303 88 HOH HOH . E 4 HOH A 4 304 87 HOH HOH . E 4 HOH A 5 305 61 HOH HOH . E 4 HOH A 6 306 131 HOH HOH . E 4 HOH A 7 307 73 HOH HOH . E 4 HOH A 8 308 109 HOH HOH . E 4 HOH A 9 309 90 HOH HOH . E 4 HOH A 10 310 39 HOH HOH . E 4 HOH A 11 311 132 HOH HOH . E 4 HOH A 12 312 23 HOH HOH . E 4 HOH A 13 313 108 HOH HOH . E 4 HOH A 14 314 58 HOH HOH . E 4 HOH A 15 315 115 HOH HOH . E 4 HOH A 16 316 1 HOH HOH . E 4 HOH A 17 317 59 HOH HOH . E 4 HOH A 18 318 14 HOH HOH . E 4 HOH A 19 319 127 HOH HOH . E 4 HOH A 20 320 85 HOH HOH . E 4 HOH A 21 321 4 HOH HOH . E 4 HOH A 22 322 37 HOH HOH . E 4 HOH A 23 323 32 HOH HOH . E 4 HOH A 24 324 15 HOH HOH . E 4 HOH A 25 325 119 HOH HOH . E 4 HOH A 26 326 97 HOH HOH . E 4 HOH A 27 327 56 HOH HOH . E 4 HOH A 28 328 125 HOH HOH . E 4 HOH A 29 329 133 HOH HOH . E 4 HOH A 30 330 20 HOH HOH . E 4 HOH A 31 331 21 HOH HOH . E 4 HOH A 32 332 42 HOH HOH . E 4 HOH A 33 333 69 HOH HOH . E 4 HOH A 34 334 33 HOH HOH . E 4 HOH A 35 335 78 HOH HOH . E 4 HOH A 36 336 12 HOH HOH . E 4 HOH A 37 337 22 HOH HOH . E 4 HOH A 38 338 44 HOH HOH . E 4 HOH A 39 339 46 HOH HOH . E 4 HOH A 40 340 26 HOH HOH . E 4 HOH A 41 341 112 HOH HOH . E 4 HOH A 42 342 34 HOH HOH . E 4 HOH A 43 343 64 HOH HOH . E 4 HOH A 44 344 95 HOH HOH . E 4 HOH A 45 345 89 HOH HOH . E 4 HOH A 46 346 63 HOH HOH . E 4 HOH A 47 347 7 HOH HOH . E 4 HOH A 48 348 130 HOH HOH . E 4 HOH A 49 349 77 HOH HOH . E 4 HOH A 50 350 74 HOH HOH . E 4 HOH A 51 351 2 HOH HOH . E 4 HOH A 52 352 54 HOH HOH . E 4 HOH A 53 353 110 HOH HOH . E 4 HOH A 54 354 113 HOH HOH . E 4 HOH A 55 355 3 HOH HOH . E 4 HOH A 56 356 6 HOH HOH . E 4 HOH A 57 357 47 HOH HOH . E 4 HOH A 58 358 86 HOH HOH . E 4 HOH A 59 359 117 HOH HOH . E 4 HOH A 60 360 55 HOH HOH . E 4 HOH A 61 361 41 HOH HOH . E 4 HOH A 62 362 106 HOH HOH . E 4 HOH A 63 363 31 HOH HOH . E 4 HOH A 64 364 17 HOH HOH . E 4 HOH A 65 365 43 HOH HOH . E 4 HOH A 66 366 27 HOH HOH . E 4 HOH A 67 367 129 HOH HOH . E 4 HOH A 68 368 53 HOH HOH . E 4 HOH A 69 369 70 HOH HOH . E 4 HOH A 70 370 29 HOH HOH . E 4 HOH A 71 371 50 HOH HOH . E 4 HOH A 72 372 18 HOH HOH . E 4 HOH A 73 373 13 HOH HOH . E 4 HOH A 74 374 11 HOH HOH . E 4 HOH A 75 375 60 HOH HOH . E 4 HOH A 76 376 38 HOH HOH . E 4 HOH A 77 377 96 HOH HOH . E 4 HOH A 78 378 71 HOH HOH . E 4 HOH A 79 379 72 HOH HOH . E 4 HOH A 80 380 101 HOH HOH . E 4 HOH A 81 381 40 HOH HOH . E 4 HOH A 82 382 107 HOH HOH . E 4 HOH A 83 383 98 HOH HOH . E 4 HOH A 84 384 9 HOH HOH . E 4 HOH A 85 385 51 HOH HOH . E 4 HOH A 86 386 45 HOH HOH . E 4 HOH A 87 387 126 HOH HOH . E 4 HOH A 88 388 105 HOH HOH . E 4 HOH A 89 389 16 HOH HOH . E 4 HOH A 90 390 28 HOH HOH . E 4 HOH A 91 391 25 HOH HOH . E 4 HOH A 92 392 30 HOH HOH . E 4 HOH A 93 393 5 HOH HOH . E 4 HOH A 94 394 19 HOH HOH . E 4 HOH A 95 395 62 HOH HOH . E 4 HOH A 96 396 92 HOH HOH . E 4 HOH A 97 397 24 HOH HOH . E 4 HOH A 98 398 57 HOH HOH . E 4 HOH A 99 399 35 HOH HOH . E 4 HOH A 100 400 10 HOH HOH . E 4 HOH A 101 401 66 HOH HOH . E 4 HOH A 102 402 104 HOH HOH . E 4 HOH A 103 403 102 HOH HOH . E 4 HOH A 104 404 36 HOH HOH . E 4 HOH A 105 405 121 HOH HOH . E 4 HOH A 106 406 100 HOH HOH . E 4 HOH A 107 407 8 HOH HOH . E 4 HOH A 108 408 114 HOH HOH . E 4 HOH A 109 409 99 HOH HOH . E 4 HOH A 110 410 75 HOH HOH . E 4 HOH A 111 411 103 HOH HOH . E 4 HOH A 112 412 81 HOH HOH . E 4 HOH A 113 413 52 HOH HOH . E 4 HOH A 114 414 128 HOH HOH . E 4 HOH A 115 415 111 HOH HOH . E 4 HOH A 116 416 83 HOH HOH . E 4 HOH A 117 417 84 HOH HOH . E 4 HOH A 118 418 120 HOH HOH . E 4 HOH A 119 419 49 HOH HOH . E 4 HOH A 120 420 48 HOH HOH . E 4 HOH A 121 421 94 HOH HOH . E 4 HOH A 122 422 135 HOH HOH . E 4 HOH A 123 423 79 HOH HOH . E 4 HOH A 124 424 93 HOH HOH . E 4 HOH A 125 425 67 HOH HOH . E 4 HOH A 126 426 76 HOH HOH . E 4 HOH A 127 427 82 HOH HOH . E 4 HOH A 128 428 65 HOH HOH . E 4 HOH A 129 429 116 HOH HOH . E 4 HOH A 130 430 91 HOH HOH . E 4 HOH A 131 431 124 HOH HOH . E 4 HOH A 132 432 134 HOH HOH . E 4 HOH A 133 433 118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 Q9U . . . B 2 5.074 6.973 -2.584 1 37.24 ? C10 Q9U 201 A 1 HETATM 2 C C14 Q9U . . . B 2 11.273 6.477 0.401 1 20.62 ? C14 Q9U 201 A 1 HETATM 3 C C17 Q9U . . . B 2 13.333 8.52 3.001 1 23.78 ? C17 Q9U 201 A 1 HETATM 4 C C18 Q9U . . . B 2 12.428 6.293 3.354 1 23.28 ? C18 Q9U 201 A 1 HETATM 5 C C19 Q9U . . . B 2 14.017 6.61 1.522 1 22.75 ? C19 Q9U 201 A 1 HETATM 6 C C20 Q9U . . . B 2 13.623 5.516 0.598 1 21.9 ? C20 Q9U 201 A 1 HETATM 7 C C01 Q9U . . . B 2 12.119 3.455 -1.636 1 21.06 ? C01 Q9U 201 A 1 HETATM 8 C C02 Q9U . . . B 2 11.559 4.673 -0.909 1 21.09 ? C02 Q9U 201 A 1 HETATM 9 C C04 Q9U . . . B 2 10.094 6.234 -0.28 1 21.34 ? C04 Q9U 201 A 1 HETATM 10 C C05 Q9U . . . B 2 8.787 7.007 -0.213 1 23.26 ? C05 Q9U 201 A 1 HETATM 11 C C06 Q9U . . . B 2 8.401 8.003 0.713 1 25.11 ? C06 Q9U 201 A 1 HETATM 12 C C08 Q9U . . . B 2 6.631 7.641 -0.933 1 29.85 ? C08 Q9U 201 A 1 HETATM 13 C C15 Q9U . . . B 2 11.65 7.611 1.44 1 21.57 ? C15 Q9U 201 A 1 HETATM 14 C C16 Q9U . . . B 2 12.885 7.267 2.268 1 22.68 ? C16 Q9U 201 A 1 HETATM 15 C C22 Q9U . . . B 2 12.212 5.501 0.016 1 21.24 ? C22 Q9U 201 A 1 HETATM 16 N N03 Q9U . . . B 2 10.295 5.144 -1.064 1 21.26 ? N03 Q9U 201 A 1 HETATM 17 N N09 Q9U . . . B 2 5.379 7.726 -1.646 1 34.82 ? N09 Q9U 201 A 1 HETATM 18 N N11 Q9U . . . B 2 5.979 5.948 -3.056 1 38.44 ? N11 Q9U 201 A 1 HETATM 19 N N12 Q9U . . . B 2 3.783 7.141 -3.213 1 36.98 ? N12 Q9U 201 A 1 HETATM 20 N N13 Q9U . . . B 2 7.717 6.812 -1.181 1 26.65 ? N13 Q9U 201 A 1 HETATM 21 O O21 Q9U . . . B 2 14.414 4.661 0.293 1 20.46 ? O21 Q9U 201 A 1 HETATM 22 S S07 Q9U . . . B 2 6.931 8.551 0.352 1 28.36 ? S07 Q9U 201 A 1 HETATM 23 H H172 Q9U . . . B 2 14.145 8.331 3.498 1 28.55 ? H172 Q9U 201 A 1 HETATM 24 H H171 Q9U . . . B 2 12.637 8.802 3.615 1 28.55 ? H171 Q9U 201 A 1 HETATM 25 H H173 Q9U . . . B 2 13.504 9.226 2.359 1 28.55 ? H173 Q9U 201 A 1 HETATM 26 H H183 Q9U . . . B 2 13.184 6.051 3.911 1 27.96 ? H183 Q9U 201 A 1 HETATM 27 H H181 Q9U . . . B 2 12.063 5.495 2.941 1 27.96 ? H181 Q9U 201 A 1 HETATM 28 H H182 Q9U . . . B 2 11.746 6.715 3.901 1 27.96 ? H182 Q9U 201 A 1 HETATM 29 H H192 Q9U . . . B 2 14.606 6.22 2.187 1 27.32 ? H192 Q9U 201 A 1 HETATM 30 H H191 Q9U . . . B 2 14.438 7.298 0.984 1 27.32 ? H191 Q9U 201 A 1 HETATM 31 H H013 Q9U . . . B 2 12.155 3.636 -2.589 1 25.29 ? H013 Q9U 201 A 1 HETATM 32 H H012 Q9U . . . B 2 13.013 3.266 -1.309 1 25.29 ? H012 Q9U 201 A 1 HETATM 33 H H011 Q9U . . . B 2 11.546 2.689 -1.474 1 25.29 ? H011 Q9U 201 A 1 HETATM 34 H H061 Q9U . . . B 2 8.926 8.309 1.416 1 30.16 ? H061 Q9U 201 A 1 HETATM 35 H H151 Q9U . . . B 2 10.9 7.746 2.04 1 25.9 ? H151 Q9U 201 A 1 HETATM 36 H H152 Q9U . . . B 2 11.82 8.434 0.955 1 25.9 ? H152 Q9U 201 A 1 HETATM 37 H H031 Q9U . . . B 2 9.702 4.794 -1.578 1 25.53 ? H031 Q9U 201 A 1 HETATM 38 H H112 Q9U . . . B 2 5.749 5.439 -3.711 1 46.15 ? H112 Q9U 201 A 1 HETATM 39 H H111 Q9U . . . B 2 6.746 5.845 -2.681 1 46.15 ? H111 Q9U 201 A 1 HETATM 40 H H121 Q9U . . . B 2 3.246 7.753 -2.935 1 44.39 ? H121 Q9U 201 A 1 HETATM 41 H H122 Q9U . . . B 2 3.555 6.635 -3.87 1 44.39 ? H122 Q9U 201 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 41 #