data_8QB0 # _model_server_result.job_id HPVKtAXC4woJ5dL9mJkM3g _model_server_result.datetime_utc '2024-10-20 07:36:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qb0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 8QB0 # _exptl.entry_id 8QB0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 317.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[4-(3,6,6-trimethyl-4-oxidanylidene-5,7-dihydro-2~{H}-isoindol-1-yl)-1,3-thiazol-2-yl]guanidine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8QB0 _cell.length_a 60.544 _cell.length_b 60.544 _cell.length_c 63.263 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QB0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H19 N5 O S' _chem_comp.formula_weight 317.409 _chem_comp.id Q9U _chem_comp.mon_nstd_flag . _chem_comp.name 2-[4-(3,6,6-trimethyl-4-oxidanylidene-5,7-dihydro-2~{H}-isoindol-1-yl)-1,3-thiazol-2-yl]guanidine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O21 C20 Q9U doub 280 n n C20 C19 Q9U sing 281 n n C20 C22 Q9U sing 282 n n C19 C16 Q9U sing 283 n n C01 C02 Q9U sing 284 n n C22 C02 Q9U doub 285 n y C22 C14 Q9U sing 286 n y C02 N03 Q9U sing 287 n y C16 C17 Q9U sing 288 n n C16 C18 Q9U sing 289 n n C16 C15 Q9U sing 290 n n C14 C15 Q9U sing 291 n n C14 C04 Q9U doub 292 n y N03 C04 Q9U sing 293 n y C04 C05 Q9U sing 294 n n C05 N13 Q9U sing 295 n y C05 C06 Q9U doub 296 n y N13 C08 Q9U doub 297 n y C06 S07 Q9U sing 298 n y N11 C10 Q9U sing 299 n n C08 S07 Q9U sing 300 n y C08 N09 Q9U sing 301 n n C10 N09 Q9U doub 302 n n C10 N12 Q9U sing 303 n n C17 H172 Q9U sing 304 n n C17 H171 Q9U sing 305 n n C17 H173 Q9U sing 306 n n C18 H183 Q9U sing 307 n n C18 H181 Q9U sing 308 n n C18 H182 Q9U sing 309 n n C19 H192 Q9U sing 310 n n C19 H191 Q9U sing 311 n n C01 H013 Q9U sing 312 n n C01 H012 Q9U sing 313 n n C01 H011 Q9U sing 314 n n C06 H061 Q9U sing 315 n n C15 H151 Q9U sing 316 n n C15 H152 Q9U sing 317 n n N03 H031 Q9U sing 318 n n N11 H112 Q9U sing 319 n n N11 H111 Q9U sing 320 n n N12 H121 Q9U sing 321 n n N12 H122 Q9U sing 322 n n # _atom_sites.entry_id 8QB0 _atom_sites.fract_transf_matrix[1][1] 0.016517 _atom_sites.fract_transf_matrix[1][2] 0.009536 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019072 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015807 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Q9U A 1 801 801 Q9U 438 . C 3 NO3 A 1 802 901 NO3 NO3 . D 4 HOH A 1 901 77 HOH HOH . D 4 HOH A 2 902 58 HOH HOH . D 4 HOH A 3 903 72 HOH HOH . D 4 HOH A 4 904 27 HOH HOH . D 4 HOH A 5 905 74 HOH HOH . D 4 HOH A 6 906 73 HOH HOH . D 4 HOH A 7 907 61 HOH HOH . D 4 HOH A 8 908 43 HOH HOH . D 4 HOH A 9 909 14 HOH HOH . D 4 HOH A 10 910 4 HOH HOH . D 4 HOH A 11 911 57 HOH HOH . D 4 HOH A 12 912 85 HOH HOH . D 4 HOH A 13 913 22 HOH HOH . D 4 HOH A 14 914 16 HOH HOH . D 4 HOH A 15 915 2 HOH HOH . D 4 HOH A 16 916 30 HOH HOH . D 4 HOH A 17 917 17 HOH HOH . D 4 HOH A 18 918 100 HOH HOH . D 4 HOH A 19 919 41 HOH HOH . D 4 HOH A 20 920 38 HOH HOH . D 4 HOH A 21 921 94 HOH HOH . D 4 HOH A 22 922 9 HOH HOH . D 4 HOH A 23 923 28 HOH HOH . D 4 HOH A 24 924 13 HOH HOH . D 4 HOH A 25 925 81 HOH HOH . D 4 HOH A 26 926 21 HOH HOH . D 4 HOH A 27 927 3 HOH HOH . D 4 HOH A 28 928 12 HOH HOH . D 4 HOH A 29 929 82 HOH HOH . D 4 HOH A 30 930 10 HOH HOH . D 4 HOH A 31 931 18 HOH HOH . D 4 HOH A 32 932 34 HOH HOH . D 4 HOH A 33 933 26 HOH HOH . D 4 HOH A 34 934 19 HOH HOH . D 4 HOH A 35 935 8 HOH HOH . D 4 HOH A 36 936 89 HOH HOH . D 4 HOH A 37 937 99 HOH HOH . D 4 HOH A 38 938 78 HOH HOH . D 4 HOH A 39 939 24 HOH HOH . D 4 HOH A 40 940 51 HOH HOH . D 4 HOH A 41 941 36 HOH HOH . D 4 HOH A 42 942 49 HOH HOH . D 4 HOH A 43 943 54 HOH HOH . D 4 HOH A 44 944 6 HOH HOH . D 4 HOH A 45 945 71 HOH HOH . D 4 HOH A 46 946 46 HOH HOH . D 4 HOH A 47 947 37 HOH HOH . D 4 HOH A 48 948 59 HOH HOH . D 4 HOH A 49 949 11 HOH HOH . D 4 HOH A 50 950 1 HOH HOH . D 4 HOH A 51 951 93 HOH HOH . D 4 HOH A 52 952 7 HOH HOH . D 4 HOH A 53 953 90 HOH HOH . D 4 HOH A 54 954 15 HOH HOH . D 4 HOH A 55 955 69 HOH HOH . D 4 HOH A 56 956 44 HOH HOH . D 4 HOH A 57 957 33 HOH HOH . D 4 HOH A 58 958 56 HOH HOH . D 4 HOH A 59 959 60 HOH HOH . D 4 HOH A 60 960 5 HOH HOH . D 4 HOH A 61 961 63 HOH HOH . D 4 HOH A 62 962 88 HOH HOH . D 4 HOH A 63 963 102 HOH HOH . D 4 HOH A 64 964 35 HOH HOH . D 4 HOH A 65 965 52 HOH HOH . D 4 HOH A 66 966 32 HOH HOH . D 4 HOH A 67 967 25 HOH HOH . D 4 HOH A 68 968 45 HOH HOH . D 4 HOH A 69 969 20 HOH HOH . D 4 HOH A 70 970 92 HOH HOH . D 4 HOH A 71 971 48 HOH HOH . D 4 HOH A 72 972 62 HOH HOH . D 4 HOH A 73 973 23 HOH HOH . D 4 HOH A 74 974 29 HOH HOH . D 4 HOH A 75 975 76 HOH HOH . D 4 HOH A 76 976 83 HOH HOH . D 4 HOH A 77 977 95 HOH HOH . D 4 HOH A 78 978 68 HOH HOH . D 4 HOH A 79 979 80 HOH HOH . D 4 HOH A 80 980 91 HOH HOH . D 4 HOH A 81 981 70 HOH HOH . D 4 HOH A 82 982 87 HOH HOH . D 4 HOH A 83 983 53 HOH HOH . D 4 HOH A 84 984 50 HOH HOH . D 4 HOH A 85 985 47 HOH HOH . D 4 HOH A 86 986 75 HOH HOH . D 4 HOH A 87 987 101 HOH HOH . D 4 HOH A 88 988 31 HOH HOH . D 4 HOH A 89 989 67 HOH HOH . D 4 HOH A 90 990 103 HOH HOH . D 4 HOH A 91 991 97 HOH HOH . D 4 HOH A 92 992 84 HOH HOH . D 4 HOH A 93 993 39 HOH HOH . D 4 HOH A 94 994 98 HOH HOH . D 4 HOH A 95 995 65 HOH HOH . D 4 HOH A 96 996 86 HOH HOH . D 4 HOH A 97 997 42 HOH HOH . D 4 HOH A 98 998 40 HOH HOH . D 4 HOH A 99 999 64 HOH HOH . D 4 HOH A 100 1000 55 HOH HOH . D 4 HOH A 101 1001 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 Q9U . . . B 2 -7.704 8.7 9.692 1 50.2 ? C10 Q9U 801 A 1 HETATM 2 C C14 Q9U . . . B 2 -8.239 11.661 4.892 1 32.01 ? C14 Q9U 801 A 1 HETATM 3 C C17 Q9U . . . B 2 -5.243 9.291 3.985 1 36.69 ? C17 Q9U 801 A 1 HETATM 4 C C18 Q9U . . . B 2 -5.113 11.781 4.185 1 35.53 ? C18 Q9U 801 A 1 HETATM 5 C C19 Q9U . . . B 2 -6.673 10.749 2.593 1 31.84 ? C19 Q9U 801 A 1 HETATM 6 C C20 Q9U . . . B 2 -7.503 11.972 2.489 1 30.46 ? C20 Q9U 801 A 1 HETATM 7 C C01 Q9U . . . B 2 -10.096 14.106 2.713 1 30.77 ? C01 Q9U 801 A 1 HETATM 8 C C02 Q9U . . . B 2 -9.5 13.176 3.766 1 30.29 ? C02 Q9U 801 A 1 HETATM 9 C C04 Q9U . . . B 2 -9.223 12.174 5.735 1 33.21 ? C04 Q9U 801 A 1 HETATM 10 C C05 Q9U . . . B 2 -9.495 11.764 7.162 1 37.48 ? C05 Q9U 801 A 1 HETATM 11 C C06 Q9U . . . B 2 -10.55 12.252 7.979 1 40.6 ? C06 Q9U 801 A 1 HETATM 12 C C08 Q9U . . . B 2 -9.228 10.493 9.109 1 41.91 ? C08 Q9U 801 A 1 HETATM 13 C C15 Q9U . . . B 2 -7.087 10.575 5.097 1 33.89 ? C15 Q9U 801 A 1 HETATM 14 C C16 Q9U . . . B 2 -6.056 10.594 3.954 1 32.89 ? C16 Q9U 801 A 1 HETATM 15 C C22 Q9U . . . B 2 -8.418 12.306 3.648 1 30.63 ? C22 Q9U 801 A 1 HETATM 16 N N03 Q9U . . . B 2 -9.978 13.068 5.03 1 32.14 ? N03 Q9U 801 A 1 HETATM 17 N N09 Q9U . . . B 2 -8.64 9.508 9.995 1 46.72 ? N09 Q9U 801 A 1 HETATM 18 N N11 Q9U . . . B 2 -7.034 8.614 8.404 1 51.77 ? N11 Q9U 801 A 1 HETATM 19 N N12 Q9U . . . B 2 -7.225 7.765 10.692 1 50.56 ? N12 Q9U 801 A 1 HETATM 20 N N13 Q9U . . . B 2 -8.742 10.711 7.837 1 39.53 ? N13 Q9U 801 A 1 HETATM 21 O O21 Q9U . . . B 2 -7.508 12.679 1.533 1 29.59 ? O21 Q9U 801 A 1 HETATM 22 S S07 Q9U . . . B 2 -10.512 11.485 9.394 1 41.31 ? S07 Q9U 801 A 1 HETATM 23 H H172 Q9U . . . B 2 -4.562 9.319 3.295 1 44.06 ? H172 Q9U 801 A 1 HETATM 24 H H171 Q9U . . . B 2 -5.833 8.538 3.827 1 44.06 ? H171 Q9U 801 A 1 HETATM 25 H H173 Q9U . . . B 2 -4.82 9.194 4.853 1 44.06 ? H173 Q9U 801 A 1 HETATM 26 H H183 Q9U . . . B 2 -4.457 11.817 3.472 1 42.66 ? H183 Q9U 801 A 1 HETATM 27 H H181 Q9U . . . B 2 -4.66 11.674 5.036 1 42.66 ? H181 Q9U 801 A 1 HETATM 28 H H182 Q9U . . . B 2 -5.626 12.605 4.194 1 42.66 ? H182 Q9U 801 A 1 HETATM 29 H H192 Q9U . . . B 2 -5.95 10.829 1.951 1 38.24 ? H192 Q9U 801 A 1 HETATM 30 H H191 Q9U . . . B 2 -7.254 9.987 2.445 1 38.24 ? H191 Q9U 801 A 1 HETATM 31 H H013 Q9U . . . B 2 -9.647 13.964 1.865 1 36.95 ? H013 Q9U 801 A 1 HETATM 32 H H012 Q9U . . . B 2 -9.978 15.027 2.992 1 36.95 ? H012 Q9U 801 A 1 HETATM 33 H H011 Q9U . . . B 2 -11.042 13.917 2.614 1 36.95 ? H011 Q9U 801 A 1 HETATM 34 H H061 Q9U . . . B 2 -11.156 12.916 7.741 1 48.75 ? H061 Q9U 801 A 1 HETATM 35 H H151 Q9U . . . B 2 -6.631 10.757 5.933 1 40.69 ? H151 Q9U 801 A 1 HETATM 36 H H152 Q9U . . . B 2 -7.492 9.695 5.139 1 40.69 ? H152 Q9U 801 A 1 HETATM 37 H H031 Q9U . . . B 2 -10.644 13.511 5.346 1 38.6 ? H031 Q9U 801 A 1 HETATM 38 H H112 Q9U . . . B 2 -7.266 9.138 7.763 1 62.16 ? H112 Q9U 801 A 1 HETATM 39 H H111 Q9U . . . B 2 -6.406 8.038 8.283 1 62.16 ? H111 Q9U 801 A 1 HETATM 40 H H121 Q9U . . . B 2 -6.591 7.217 10.5 1 60.71 ? H121 Q9U 801 A 1 HETATM 41 H H122 Q9U . . . B 2 -7.574 7.761 11.478 1 60.71 ? H122 Q9U 801 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 41 #