data_8QB6 # _model_server_result.job_id NNhzELxqY4BTIbv6jovo3w _model_server_result.datetime_utc '2025-04-01 23:41:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qb6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 8QB6 # _exptl.entry_id 8QB6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8QB6 _cell.length_a 89.688 _cell.length_b 89.688 _cell.length_c 97.685 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QB6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 259 n n C1 H11 MPD sing 260 n n C1 H12 MPD sing 261 n n C1 H13 MPD sing 262 n n C2 O2 MPD sing 263 n n C2 CM MPD sing 264 n n C2 C3 MPD sing 265 n n O2 HO2 MPD sing 266 n n CM HM1 MPD sing 267 n n CM HM2 MPD sing 268 n n CM HM3 MPD sing 269 n n C3 C4 MPD sing 270 n n C3 H31 MPD sing 271 n n C3 H32 MPD sing 272 n n C4 O4 MPD sing 273 n n C4 C5 MPD sing 274 n n C4 H4 MPD sing 275 n n O4 HO4 MPD sing 276 n n C5 H51 MPD sing 277 n n C5 H52 MPD sing 278 n n C5 H53 MPD sing 279 n n # _atom_sites.entry_id 8QB6 _atom_sites.fract_transf_matrix[1][1] 0.01115 _atom_sites.fract_transf_matrix[1][2] 0.006437 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012875 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010237 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GC2 A 1 401 377 GC2 GC2 . C 3 MPD A 1 402 1 MPD MPD . D 3 MPD A 1 403 2 MPD MPD . E 4 HOH A 1 501 123 HOH HOH . E 4 HOH A 2 502 141 HOH HOH . E 4 HOH A 3 503 165 HOH HOH . E 4 HOH A 4 504 205 HOH HOH . E 4 HOH A 5 505 106 HOH HOH . E 4 HOH A 6 506 162 HOH HOH . E 4 HOH A 7 507 187 HOH HOH . E 4 HOH A 8 508 184 HOH HOH . E 4 HOH A 9 509 118 HOH HOH . E 4 HOH A 10 510 174 HOH HOH . E 4 HOH A 11 511 104 HOH HOH . E 4 HOH A 12 512 188 HOH HOH . E 4 HOH A 13 513 176 HOH HOH . E 4 HOH A 14 514 139 HOH HOH . E 4 HOH A 15 515 37 HOH HOH . E 4 HOH A 16 516 204 HOH HOH . E 4 HOH A 17 517 90 HOH HOH . E 4 HOH A 18 518 181 HOH HOH . E 4 HOH A 19 519 182 HOH HOH . E 4 HOH A 20 520 5 HOH HOH . E 4 HOH A 21 521 32 HOH HOH . E 4 HOH A 22 522 128 HOH HOH . E 4 HOH A 23 523 18 HOH HOH . E 4 HOH A 24 524 87 HOH HOH . E 4 HOH A 25 525 149 HOH HOH . E 4 HOH A 26 526 52 HOH HOH . E 4 HOH A 27 527 6 HOH HOH . E 4 HOH A 28 528 134 HOH HOH . E 4 HOH A 29 529 43 HOH HOH . E 4 HOH A 30 530 35 HOH HOH . E 4 HOH A 31 531 10 HOH HOH . E 4 HOH A 32 532 112 HOH HOH . E 4 HOH A 33 533 175 HOH HOH . E 4 HOH A 34 534 12 HOH HOH . E 4 HOH A 35 535 60 HOH HOH . E 4 HOH A 36 536 78 HOH HOH . E 4 HOH A 37 537 69 HOH HOH . E 4 HOH A 38 538 142 HOH HOH . E 4 HOH A 39 539 73 HOH HOH . E 4 HOH A 40 540 100 HOH HOH . E 4 HOH A 41 541 33 HOH HOH . E 4 HOH A 42 542 70 HOH HOH . E 4 HOH A 43 543 152 HOH HOH . E 4 HOH A 44 544 16 HOH HOH . E 4 HOH A 45 545 50 HOH HOH . E 4 HOH A 46 546 72 HOH HOH . E 4 HOH A 47 547 2 HOH HOH . E 4 HOH A 48 548 68 HOH HOH . E 4 HOH A 49 549 156 HOH HOH . E 4 HOH A 50 550 11 HOH HOH . E 4 HOH A 51 551 23 HOH HOH . E 4 HOH A 52 552 164 HOH HOH . E 4 HOH A 53 553 40 HOH HOH . E 4 HOH A 54 554 151 HOH HOH . E 4 HOH A 55 555 124 HOH HOH . E 4 HOH A 56 556 39 HOH HOH . E 4 HOH A 57 557 3 HOH HOH . E 4 HOH A 58 558 89 HOH HOH . E 4 HOH A 59 559 107 HOH HOH . E 4 HOH A 60 560 66 HOH HOH . E 4 HOH A 61 561 34 HOH HOH . E 4 HOH A 62 562 15 HOH HOH . E 4 HOH A 63 563 153 HOH HOH . E 4 HOH A 64 564 133 HOH HOH . E 4 HOH A 65 565 44 HOH HOH . E 4 HOH A 66 566 206 HOH HOH . E 4 HOH A 67 567 207 HOH HOH . E 4 HOH A 68 568 9 HOH HOH . E 4 HOH A 69 569 198 HOH HOH . E 4 HOH A 70 570 36 HOH HOH . E 4 HOH A 71 571 17 HOH HOH . E 4 HOH A 72 572 172 HOH HOH . E 4 HOH A 73 573 64 HOH HOH . E 4 HOH A 74 574 8 HOH HOH . E 4 HOH A 75 575 171 HOH HOH . E 4 HOH A 76 576 144 HOH HOH . E 4 HOH A 77 577 41 HOH HOH . E 4 HOH A 78 578 119 HOH HOH . E 4 HOH A 79 579 158 HOH HOH . E 4 HOH A 80 580 194 HOH HOH . E 4 HOH A 81 581 105 HOH HOH . E 4 HOH A 82 582 67 HOH HOH . E 4 HOH A 83 583 173 HOH HOH . E 4 HOH A 84 584 4 HOH HOH . E 4 HOH A 85 585 14 HOH HOH . E 4 HOH A 86 586 21 HOH HOH . E 4 HOH A 87 587 155 HOH HOH . E 4 HOH A 88 588 135 HOH HOH . E 4 HOH A 89 589 116 HOH HOH . E 4 HOH A 90 590 62 HOH HOH . E 4 HOH A 91 591 132 HOH HOH . E 4 HOH A 92 592 20 HOH HOH . E 4 HOH A 93 593 102 HOH HOH . E 4 HOH A 94 594 166 HOH HOH . E 4 HOH A 95 595 114 HOH HOH . E 4 HOH A 96 596 51 HOH HOH . E 4 HOH A 97 597 19 HOH HOH . E 4 HOH A 98 598 170 HOH HOH . E 4 HOH A 99 599 130 HOH HOH . E 4 HOH A 100 600 54 HOH HOH . E 4 HOH A 101 601 85 HOH HOH . E 4 HOH A 102 602 93 HOH HOH . E 4 HOH A 103 603 59 HOH HOH . E 4 HOH A 104 604 86 HOH HOH . E 4 HOH A 105 605 179 HOH HOH . E 4 HOH A 106 606 65 HOH HOH . E 4 HOH A 107 607 109 HOH HOH . E 4 HOH A 108 608 161 HOH HOH . E 4 HOH A 109 609 24 HOH HOH . E 4 HOH A 110 610 195 HOH HOH . E 4 HOH A 111 611 111 HOH HOH . E 4 HOH A 112 612 55 HOH HOH . E 4 HOH A 113 613 183 HOH HOH . E 4 HOH A 114 614 203 HOH HOH . E 4 HOH A 115 615 103 HOH HOH . E 4 HOH A 116 616 82 HOH HOH . E 4 HOH A 117 617 45 HOH HOH . E 4 HOH A 118 618 138 HOH HOH . E 4 HOH A 119 619 56 HOH HOH . E 4 HOH A 120 620 31 HOH HOH . E 4 HOH A 121 621 120 HOH HOH . E 4 HOH A 122 622 77 HOH HOH . E 4 HOH A 123 623 92 HOH HOH . E 4 HOH A 124 624 47 HOH HOH . E 4 HOH A 125 625 38 HOH HOH . E 4 HOH A 126 626 157 HOH HOH . E 4 HOH A 127 627 199 HOH HOH . E 4 HOH A 128 628 126 HOH HOH . E 4 HOH A 129 629 96 HOH HOH . E 4 HOH A 130 630 169 HOH HOH . E 4 HOH A 131 631 178 HOH HOH . E 4 HOH A 132 632 84 HOH HOH . E 4 HOH A 133 633 127 HOH HOH . E 4 HOH A 134 634 27 HOH HOH . E 4 HOH A 135 635 99 HOH HOH . E 4 HOH A 136 636 185 HOH HOH . E 4 HOH A 137 637 131 HOH HOH . E 4 HOH A 138 638 7 HOH HOH . E 4 HOH A 139 639 61 HOH HOH . E 4 HOH A 140 640 189 HOH HOH . E 4 HOH A 141 641 48 HOH HOH . E 4 HOH A 142 642 94 HOH HOH . E 4 HOH A 143 643 108 HOH HOH . E 4 HOH A 144 644 117 HOH HOH . E 4 HOH A 145 645 29 HOH HOH . E 4 HOH A 146 646 75 HOH HOH . E 4 HOH A 147 647 30 HOH HOH . E 4 HOH A 148 648 42 HOH HOH . E 4 HOH A 149 649 63 HOH HOH . E 4 HOH A 150 650 154 HOH HOH . E 4 HOH A 151 651 200 HOH HOH . E 4 HOH A 152 652 80 HOH HOH . E 4 HOH A 153 653 58 HOH HOH . E 4 HOH A 154 654 28 HOH HOH . E 4 HOH A 155 655 13 HOH HOH . E 4 HOH A 156 656 49 HOH HOH . E 4 HOH A 157 657 168 HOH HOH . E 4 HOH A 158 658 25 HOH HOH . E 4 HOH A 159 659 137 HOH HOH . E 4 HOH A 160 660 159 HOH HOH . E 4 HOH A 161 661 98 HOH HOH . E 4 HOH A 162 662 129 HOH HOH . E 4 HOH A 163 663 196 HOH HOH . E 4 HOH A 164 664 81 HOH HOH . E 4 HOH A 165 665 192 HOH HOH . E 4 HOH A 166 666 57 HOH HOH . E 4 HOH A 167 667 150 HOH HOH . E 4 HOH A 168 668 147 HOH HOH . E 4 HOH A 169 669 163 HOH HOH . E 4 HOH A 170 670 143 HOH HOH . E 4 HOH A 171 671 110 HOH HOH . E 4 HOH A 172 672 201 HOH HOH . E 4 HOH A 173 673 113 HOH HOH . E 4 HOH A 174 674 191 HOH HOH . E 4 HOH A 175 675 97 HOH HOH . E 4 HOH A 176 676 71 HOH HOH . E 4 HOH A 177 677 167 HOH HOH . E 4 HOH A 178 678 91 HOH HOH . E 4 HOH A 179 679 202 HOH HOH . E 4 HOH A 180 680 177 HOH HOH . E 4 HOH A 181 681 76 HOH HOH . E 4 HOH A 182 682 145 HOH HOH . E 4 HOH A 183 683 115 HOH HOH . E 4 HOH A 184 684 125 HOH HOH . E 4 HOH A 185 685 101 HOH HOH . E 4 HOH A 186 686 46 HOH HOH . E 4 HOH A 187 687 146 HOH HOH . E 4 HOH A 188 688 26 HOH HOH . E 4 HOH A 189 689 186 HOH HOH . E 4 HOH A 190 690 197 HOH HOH . E 4 HOH A 191 691 180 HOH HOH . E 4 HOH A 192 692 160 HOH HOH . E 4 HOH A 193 693 53 HOH HOH . E 4 HOH A 194 694 83 HOH HOH . E 4 HOH A 195 695 140 HOH HOH . E 4 HOH A 196 696 136 HOH HOH . E 4 HOH A 197 697 95 HOH HOH . E 4 HOH A 198 698 190 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . D 3 21.298 29.615 -21.589 1 45.16 0 C1 MPD 403 A 1 HETATM 2 C C2 MPD . . . D 3 20.945 30.179 -20.222 1 39.95 0 C2 MPD 403 A 1 HETATM 3 O O2 MPD . . . D 3 21.593 31.471 -20.055 1 35.26 0 O2 MPD 403 A 1 HETATM 4 C CM MPD . . . D 3 19.444 30.345 -20.075 1 45.34 0 CM MPD 403 A 1 HETATM 5 C C3 MPD . . . D 3 21.499 29.247 -19.146 1 36.78 0 C3 MPD 403 A 1 HETATM 6 C C4 MPD . . . D 3 22.974 28.994 -19.292 1 33.26 0 C4 MPD 403 A 1 HETATM 7 O O4 MPD . . . D 3 23.747 30.199 -19.127 1 32.12 0 O4 MPD 403 A 1 HETATM 8 C C5 MPD . . . D 3 23.44 27.949 -18.362 1 30.97 0 C5 MPD 403 A 1 HETATM 9 H H11 MPD . . . D 3 21.736 28.755 -21.486 1 44.05 0 H11 MPD 403 A 1 HETATM 10 H H12 MPD . . . D 3 21.894 30.23 -22.047 1 44.15 0 H12 MPD 403 A 1 HETATM 11 H H13 MPD . . . D 3 20.487 29.503 -22.112 1 44.1 0 H13 MPD 403 A 1 HETATM 12 H HO2 MPD . . . D 3 22.111 31.423 -19.396 0 35.6 0 HO2 MPD 403 A 1 HETATM 13 H HM1 MPD . . . D 3 19.138 29.841 -19.302 1 44.2 0 HM1 MPD 403 A 1 HETATM 14 H HM2 MPD . . . D 3 18.999 30.017 -20.874 1 44.42 0 HM2 MPD 403 A 1 HETATM 15 H HM3 MPD . . . D 3 19.236 31.287 -19.951 1 44.15 0 HM3 MPD 403 A 1 HETATM 16 H H31 MPD . . . D 3 21.022 28.391 -19.197 1 36.27 0 H31 MPD 403 A 1 HETATM 17 H H32 MPD . . . D 3 21.33 29.648 -18.266 1 36.89 0 H32 MPD 403 A 1 HETATM 18 H H4 MPD . . . D 3 23.154 28.668 -20.209 1 33.11 0 H4 MPD 403 A 1 HETATM 19 H HO4 MPD . . . D 3 23.251 30.833 -18.856 1 32.6 0 HO4 MPD 403 A 1 HETATM 20 H H51 MPD . . . D 3 24.173 28.294 -17.82 1 31.17 0 H51 MPD 403 A 1 HETATM 21 H H52 MPD . . . D 3 23.752 27.177 -18.865 1 31.53 0 H52 MPD 403 A 1 HETATM 22 H H53 MPD . . . D 3 22.711 27.677 -17.776 1 31.36 0 H53 MPD 403 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #