data_8QBD # _model_server_result.job_id wzR9mFlrByMLzajyB2LNMA _model_server_result.datetime_utc '2024-10-10 10:28:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qbd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":401}' # _entry.id 8QBD # _exptl.entry_id 8QBD _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 420.096 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE _entity.pdbx_number_of_molecules 14 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8QBD _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QBD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 14-meric _pdbx_struct_assembly.oligomeric_count 14 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 O N N ? 2 Q N N ? 2 S N N ? 2 U N N ? 2 W N N ? 2 Y N N ? 2 AA N N ? 2 CA N N ? 2 EA N N ? 2 GA N N ? 2 IA N N ? 2 KA N N ? 2 MA N N ? 2 OA N N # _chem_comp.formula 'C6 H15 O15 P3' _chem_comp.formula_weight 420.096 _chem_comp.id I3P _chem_comp.mon_nstd_flag . _chem_comp.name D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 I3P sing 137 n n C1 C6 I3P sing 138 n n C1 O1 I3P sing 139 n n C1 H1 I3P sing 140 n n C2 C3 I3P sing 141 n n C2 O2 I3P sing 142 n n C2 H2 I3P sing 143 n n C3 C4 I3P sing 144 n n C3 O3 I3P sing 145 n n C3 H3 I3P sing 146 n n C4 C5 I3P sing 147 n n C4 O4 I3P sing 148 n n C4 H4 I3P sing 149 n n C5 C6 I3P sing 150 n n C5 O5 I3P sing 151 n n C5 H5 I3P sing 152 n n C6 O6 I3P sing 153 n n C6 H6 I3P sing 154 n n O1 P1 I3P sing 155 n n O2 HO2 I3P sing 156 n n O3 HO3 I3P sing 157 n n O4 P4 I3P sing 158 n n O5 P5 I3P sing 159 n n O6 HO6 I3P sing 160 n n P1 O11 I3P doub 161 n n P1 O12 I3P sing 162 n n P1 O13 I3P sing 163 n n O12 HO12 I3P sing 164 n n O13 HO13 I3P sing 165 n n P4 O41 I3P doub 166 n n P4 O42 I3P sing 167 n n P4 O43 I3P sing 168 n n O42 HO42 I3P sing 169 n n O43 HO43 I3P sing 170 n n P5 O51 I3P doub 171 n n P5 O52 I3P sing 172 n n P5 O53 I3P sing 173 n n O52 HO52 I3P sing 174 n n O53 HO53 I3P sing 175 n n # _atom_sites.entry_id 8QBD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code O 2 I3P A 1 401 401 I3P I3P . P 3 P5S A 1 402 501 P5S P5S . Q 2 I3P B 1 401 401 I3P I3P . R 3 P5S B 1 402 501 P5S P5S . S 2 I3P C 1 401 401 I3P I3P . T 3 P5S C 1 402 501 P5S P5S . U 2 I3P I 1 401 401 I3P I3P . V 3 P5S I 1 402 501 P5S P5S . W 2 I3P D 1 401 401 I3P I3P . X 3 P5S D 1 402 501 P5S P5S . Y 2 I3P J 1 401 401 I3P I3P . Z 3 P5S J 1 402 501 P5S P5S . AA 2 I3P E 1 401 401 I3P I3P . BA 3 P5S E 1 402 501 P5S P5S . CA 2 I3P K 1 401 401 I3P I3P . DA 3 P5S K 1 402 501 P5S P5S . EA 2 I3P F 1 401 401 I3P I3P . FA 3 P5S F 1 402 501 P5S P5S . GA 2 I3P L 1 401 401 I3P I3P . HA 3 P5S L 1 402 501 P5S P5S . IA 2 I3P G 1 401 401 I3P I3P . JA 3 P5S G 1 402 501 P5S P5S . KA 2 I3P M 1 401 401 I3P I3P . LA 3 P5S M 1 402 501 P5S P5S . MA 2 I3P H 1 401 401 I3P I3P . NA 3 P5S H 1 402 501 P5S P5S . OA 2 I3P N 1 401 401 I3P I3P . PA 3 P5S N 1 402 501 P5S P5S . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 I3P . . . Y 2 330.054 166.266 270.013 1 98.09 ? C1 I3P 401 J 1 HETATM 2 C C2 I3P . . . Y 2 329.327 165.076 269.37 1 98.09 ? C2 I3P 401 J 1 HETATM 3 C C3 I3P . . . Y 2 328.525 164.261 270.394 1 98.09 ? C3 I3P 401 J 1 HETATM 4 C C4 I3P . . . Y 2 329.395 163.72 271.54 1 98.09 ? C4 I3P 401 J 1 HETATM 5 C C5 I3P . . . Y 2 330.751 164.431 271.653 1 98.09 ? C5 I3P 401 J 1 HETATM 6 C C6 I3P . . . Y 2 330.642 165.939 271.396 1 98.09 ? C6 I3P 401 J 1 HETATM 7 O O1 I3P . . . Y 2 329.143 167.329 270.148 1 98.09 ? O1 I3P 401 J 1 HETATM 8 O O2 I3P . . . Y 2 328.445 165.559 268.386 1 98.09 ? O2 I3P 401 J 1 HETATM 9 O O3 I3P . . . Y 2 327.515 165.078 270.935 1 98.09 ? O3 I3P 401 J 1 HETATM 10 O O4 I3P . . . Y 2 329.623 162.349 271.327 1 98.09 ? O4 I3P 401 J 1 HETATM 11 O O5 I3P . . . Y 2 331.265 164.228 272.947 1 98.09 ? O5 I3P 401 J 1 HETATM 12 O O6 I3P . . . Y 2 331.927 166.504 271.487 1 98.09 ? O6 I3P 401 J 1 HETATM 13 P P1 I3P . . . Y 2 329.301 168.63 269.15 1 98.09 ? P1 I3P 401 J 1 HETATM 14 O O11 I3P . . . Y 2 329.35 168.161 267.715 1 98.09 ? O11 I3P 401 J 1 HETATM 15 O O12 I3P . . . Y 2 328.122 169.554 269.337 1 98.09 ? O12 I3P 401 J 1 HETATM 16 O O13 I3P . . . Y 2 330.576 169.368 269.482 1 98.09 ? O13 I3P 401 J 1 HETATM 17 P P4 I3P . . . Y 2 328.631 161.262 272.067 1 98.09 ? P4 I3P 401 J 1 HETATM 18 O O41 I3P . . . Y 2 327.225 161.421 271.539 1 98.09 ? O41 I3P 401 J 1 HETATM 19 O O42 I3P . . . Y 2 328.636 161.508 273.556 1 98.09 ? O42 I3P 401 J 1 HETATM 20 O O43 I3P . . . Y 2 329.12 159.862 271.785 1 98.09 ? O43 I3P 401 J 1 HETATM 21 P P5 I3P . . . Y 2 332.813 163.686 273.097 1 98.09 ? P5 I3P 401 J 1 HETATM 22 O O51 I3P . . . Y 2 332.933 162.32 272.466 1 98.09 ? O51 I3P 401 J 1 HETATM 23 O O52 I3P . . . Y 2 333.176 163.599 274.56 1 98.09 ? O52 I3P 401 J 1 HETATM 24 O O53 I3P . . . Y 2 333.748 164.645 272.401 1 98.09 ? O53 I3P 401 J 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 50 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 24 #