data_8QBF # _model_server_result.job_id E8yaJrP5nFMStumQsI58ZQ _model_server_result.datetime_utc '2024-11-08 14:56:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qbf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 8QBF # _exptl.entry_id 8QBF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 420.096 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C6 H15 O15 P3' _chem_comp.formula_weight 420.096 _chem_comp.id I3P _chem_comp.mon_nstd_flag . _chem_comp.name D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 I3P sing 137 n n C1 C6 I3P sing 138 n n C1 O1 I3P sing 139 n n C1 H1 I3P sing 140 n n C2 C3 I3P sing 141 n n C2 O2 I3P sing 142 n n C2 H2 I3P sing 143 n n C3 C4 I3P sing 144 n n C3 O3 I3P sing 145 n n C3 H3 I3P sing 146 n n C4 C5 I3P sing 147 n n C4 O4 I3P sing 148 n n C4 H4 I3P sing 149 n n C5 C6 I3P sing 150 n n C5 O5 I3P sing 151 n n C5 H5 I3P sing 152 n n C6 O6 I3P sing 153 n n C6 H6 I3P sing 154 n n O1 P1 I3P sing 155 n n O2 HO2 I3P sing 156 n n O3 HO3 I3P sing 157 n n O4 P4 I3P sing 158 n n O5 P5 I3P sing 159 n n O6 HO6 I3P sing 160 n n P1 O11 I3P doub 161 n n P1 O12 I3P sing 162 n n P1 O13 I3P sing 163 n n O12 HO12 I3P sing 164 n n O13 HO13 I3P sing 165 n n P4 O41 I3P doub 166 n n P4 O42 I3P sing 167 n n P4 O43 I3P sing 168 n n O42 HO42 I3P sing 169 n n O43 HO43 I3P sing 170 n n P5 O51 I3P doub 171 n n P5 O52 I3P sing 172 n n P5 O53 I3P sing 173 n n O52 HO52 I3P sing 174 n n O53 HO53 I3P sing 175 n n # _atom_sites.entry_id 8QBF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 I3P A 1 301 202 I3P I3P . D 3 SEP A 1 302 2401 SEP SEP . E 2 I3P B 1 301 202 I3P I3P . F 3 SEP B 1 302 2401 SEP SEP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 I3P . . . C 2 187.484 161.967 156.569 1 109.94 ? C1 I3P 301 A 1 HETATM 2 C C2 I3P . . . C 2 188.949 161.914 156.113 1 109.94 ? C2 I3P 301 A 1 HETATM 3 C C3 I3P . . . C 2 189.621 163.295 156.122 1 109.94 ? C3 I3P 301 A 1 HETATM 4 C C4 I3P . . . C 2 188.886 164.325 155.247 1 109.94 ? C4 I3P 301 A 1 HETATM 5 C C5 I3P . . . C 2 187.444 163.916 154.914 1 109.94 ? C5 I3P 301 A 1 HETATM 6 C C6 I3P . . . C 2 186.745 163.23 156.094 1 109.94 ? C6 I3P 301 A 1 HETATM 7 O O1 I3P . . . C 2 187.449 161.923 157.975 1 109.94 ? O1 I3P 301 A 1 HETATM 8 O O2 I3P . . . C 2 189.662 161.062 156.976 1 109.94 ? O2 I3P 301 A 1 HETATM 9 O O3 I3P . . . C 2 189.67 163.771 157.445 1 109.94 ? O3 I3P 301 A 1 HETATM 10 O O4 I3P . . . C 2 189.595 164.488 154.044 1 109.94 ? O4 I3P 301 A 1 HETATM 11 O O5 I3P . . . C 2 186.716 165.068 154.566 1 109.94 ? O5 I3P 301 A 1 HETATM 12 O O6 I3P . . . C 2 185.444 162.871 155.699 1 109.94 ? O6 I3P 301 A 1 HETATM 13 P P1 I3P . . . C 2 186.752 160.619 158.702 1 109.94 ? P1 I3P 301 A 1 HETATM 14 O O11 I3P . . . C 2 187.333 159.351 158.124 1 109.94 ? O11 I3P 301 A 1 HETATM 15 O O12 I3P . . . C 2 187.02 160.665 160.186 1 109.94 ? O12 I3P 301 A 1 HETATM 16 O O13 I3P . . . C 2 185.262 160.645 158.458 1 109.94 ? O13 I3P 301 A 1 HETATM 17 P P4 I3P . . . C 2 190.917 165.474 154.035 1 109.94 ? P4 I3P 301 A 1 HETATM 18 O O41 I3P . . . C 2 191.182 165.946 152.626 1 109.94 ? O41 I3P 301 A 1 HETATM 19 O O42 I3P . . . C 2 190.659 166.665 154.925 1 109.94 ? O42 I3P 301 A 1 HETATM 20 O O43 I3P . . . C 2 192.118 164.716 154.546 1 109.94 ? O43 I3P 301 A 1 HETATM 21 P P5 I3P . . . C 2 186.193 165.223 153.011 1 109.94 ? P5 I3P 301 A 1 HETATM 22 O O51 I3P . . . C 2 187.375 165.155 152.075 1 109.94 ? O51 I3P 301 A 1 HETATM 23 O O52 I3P . . . C 2 185.497 166.551 152.846 1 109.94 ? O52 I3P 301 A 1 HETATM 24 O O53 I3P . . . C 2 185.23 164.104 152.69 1 109.94 ? O53 I3P 301 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 24 #