data_8QBU # _model_server_result.job_id g1lwoZu5fd7CH5EyDBHuUw _model_server_result.datetime_utc '2024-10-12 17:17:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qbu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 8QBU # _exptl.entry_id 8QBU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 66.05 _cell.angle_beta 89.72 _cell.angle_gamma 88.97 _cell.entry_id 8QBU _cell.length_a 46.173 _cell.length_b 47.715 _cell.length_c 50.586 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QBU _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 143 n n C1 C2 EDO sing 144 n n C1 H11 EDO sing 145 n n C1 H12 EDO sing 146 n n O1 HO1 EDO sing 147 n n C2 O2 EDO sing 148 n n C2 H21 EDO sing 149 n n C2 H22 EDO sing 150 n n O2 HO2 EDO sing 151 n n # _atom_sites.entry_id 8QBU _atom_sites.fract_transf_matrix[1][1] 0.021658 _atom_sites.fract_transf_matrix[1][2] -0.000389 _atom_sites.fract_transf_matrix[1][3] 0.000057 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020961 _atom_sites.fract_transf_matrix[2][3] -0.00931 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021631 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 401 404 EDO EDO . C 2 EDO A 1 402 405 EDO EDO . D 2 EDO A 1 403 406 EDO EDO . E 3 42J A 1 404 407 42J 42J . F 4 3NG A 1 405 408 3NG 3NG . G 2 EDO A 1 406 409 EDO EDO . H 2 EDO A 1 407 410 EDO EDO . I 2 EDO A 1 408 411 EDO EDO . J 2 EDO A 1 409 412 EDO EDO . K 2 EDO A 1 410 413 EDO EDO . L 2 EDO A 1 411 414 EDO EDO . M 2 EDO A 1 412 415 EDO EDO . N 2 EDO A 1 413 416 EDO EDO . O 2 EDO A 1 414 417 EDO EDO . P 5 HOH A 1 501 236 HOH HOH . P 5 HOH A 2 502 218 HOH HOH . P 5 HOH A 3 503 262 HOH HOH . P 5 HOH A 4 504 334 HOH HOH . P 5 HOH A 5 505 133 HOH HOH . P 5 HOH A 6 506 186 HOH HOH . P 5 HOH A 7 507 280 HOH HOH . P 5 HOH A 8 508 192 HOH HOH . P 5 HOH A 9 509 88 HOH HOH . P 5 HOH A 10 510 93 HOH HOH . P 5 HOH A 11 511 40 HOH HOH . P 5 HOH A 12 512 312 HOH HOH . P 5 HOH A 13 513 188 HOH HOH . P 5 HOH A 14 514 299 HOH HOH . P 5 HOH A 15 515 103 HOH HOH . P 5 HOH A 16 516 72 HOH HOH . P 5 HOH A 17 517 298 HOH HOH . P 5 HOH A 18 518 50 HOH HOH . P 5 HOH A 19 519 264 HOH HOH . P 5 HOH A 20 520 150 HOH HOH . P 5 HOH A 21 521 43 HOH HOH . P 5 HOH A 22 522 32 HOH HOH . P 5 HOH A 23 523 338 HOH HOH . P 5 HOH A 24 524 284 HOH HOH . P 5 HOH A 25 525 258 HOH HOH . P 5 HOH A 26 526 51 HOH HOH . P 5 HOH A 27 527 16 HOH HOH . P 5 HOH A 28 528 335 HOH HOH . P 5 HOH A 29 529 331 HOH HOH . P 5 HOH A 30 530 184 HOH HOH . P 5 HOH A 31 531 68 HOH HOH . P 5 HOH A 32 532 75 HOH HOH . P 5 HOH A 33 533 249 HOH HOH . P 5 HOH A 34 534 46 HOH HOH . P 5 HOH A 35 535 65 HOH HOH . P 5 HOH A 36 536 305 HOH HOH . P 5 HOH A 37 537 109 HOH HOH . P 5 HOH A 38 538 127 HOH HOH . P 5 HOH A 39 539 21 HOH HOH . P 5 HOH A 40 540 113 HOH HOH . P 5 HOH A 41 541 111 HOH HOH . P 5 HOH A 42 542 77 HOH HOH . P 5 HOH A 43 543 220 HOH HOH . P 5 HOH A 44 544 78 HOH HOH . P 5 HOH A 45 545 24 HOH HOH . P 5 HOH A 46 546 99 HOH HOH . P 5 HOH A 47 547 80 HOH HOH . P 5 HOH A 48 548 42 HOH HOH . P 5 HOH A 49 549 266 HOH HOH . P 5 HOH A 50 550 96 HOH HOH . P 5 HOH A 51 551 23 HOH HOH . P 5 HOH A 52 552 328 HOH HOH . P 5 HOH A 53 553 125 HOH HOH . P 5 HOH A 54 554 180 HOH HOH . P 5 HOH A 55 555 59 HOH HOH . P 5 HOH A 56 556 165 HOH HOH . P 5 HOH A 57 557 76 HOH HOH . P 5 HOH A 58 558 27 HOH HOH . P 5 HOH A 59 559 108 HOH HOH . P 5 HOH A 60 560 141 HOH HOH . P 5 HOH A 61 561 263 HOH HOH . P 5 HOH A 62 562 126 HOH HOH . P 5 HOH A 63 563 174 HOH HOH . P 5 HOH A 64 564 146 HOH HOH . P 5 HOH A 65 565 49 HOH HOH . P 5 HOH A 66 566 55 HOH HOH . P 5 HOH A 67 567 67 HOH HOH . P 5 HOH A 68 568 239 HOH HOH . P 5 HOH A 69 569 2 HOH HOH . P 5 HOH A 70 570 189 HOH HOH . P 5 HOH A 71 571 15 HOH HOH . P 5 HOH A 72 572 172 HOH HOH . P 5 HOH A 73 573 83 HOH HOH . P 5 HOH A 74 574 85 HOH HOH . P 5 HOH A 75 575 36 HOH HOH . P 5 HOH A 76 576 35 HOH HOH . P 5 HOH A 77 577 134 HOH HOH . P 5 HOH A 78 578 121 HOH HOH . P 5 HOH A 79 579 8 HOH HOH . P 5 HOH A 80 580 137 HOH HOH . P 5 HOH A 81 581 66 HOH HOH . P 5 HOH A 82 582 199 HOH HOH . P 5 HOH A 83 583 62 HOH HOH . P 5 HOH A 84 584 64 HOH HOH . P 5 HOH A 85 585 81 HOH HOH . P 5 HOH A 86 586 1 HOH HOH . P 5 HOH A 87 587 14 HOH HOH . P 5 HOH A 88 588 235 HOH HOH . P 5 HOH A 89 589 79 HOH HOH . P 5 HOH A 90 590 118 HOH HOH . P 5 HOH A 91 591 158 HOH HOH . P 5 HOH A 92 592 138 HOH HOH . P 5 HOH A 93 593 177 HOH HOH . P 5 HOH A 94 594 145 HOH HOH . P 5 HOH A 95 595 140 HOH HOH . P 5 HOH A 96 596 18 HOH HOH . P 5 HOH A 97 597 25 HOH HOH . P 5 HOH A 98 598 156 HOH HOH . P 5 HOH A 99 599 39 HOH HOH . P 5 HOH A 100 600 123 HOH HOH . P 5 HOH A 101 601 10 HOH HOH . P 5 HOH A 102 602 28 HOH HOH . P 5 HOH A 103 603 252 HOH HOH . P 5 HOH A 104 604 58 HOH HOH . P 5 HOH A 105 605 110 HOH HOH . P 5 HOH A 106 606 29 HOH HOH . P 5 HOH A 107 607 104 HOH HOH . P 5 HOH A 108 608 215 HOH HOH . P 5 HOH A 109 609 5 HOH HOH . P 5 HOH A 110 610 181 HOH HOH . P 5 HOH A 111 611 38 HOH HOH . P 5 HOH A 112 612 33 HOH HOH . P 5 HOH A 113 613 19 HOH HOH . P 5 HOH A 114 614 227 HOH HOH . P 5 HOH A 115 615 13 HOH HOH . P 5 HOH A 116 616 3 HOH HOH . P 5 HOH A 117 617 190 HOH HOH . P 5 HOH A 118 618 82 HOH HOH . P 5 HOH A 119 619 9 HOH HOH . P 5 HOH A 120 620 206 HOH HOH . P 5 HOH A 121 621 20 HOH HOH . P 5 HOH A 122 622 337 HOH HOH . P 5 HOH A 123 623 163 HOH HOH . P 5 HOH A 124 624 6 HOH HOH . P 5 HOH A 125 625 22 HOH HOH . P 5 HOH A 126 626 288 HOH HOH . P 5 HOH A 127 627 124 HOH HOH . P 5 HOH A 128 628 143 HOH HOH . P 5 HOH A 129 629 171 HOH HOH . P 5 HOH A 130 630 69 HOH HOH . P 5 HOH A 131 631 221 HOH HOH . P 5 HOH A 132 632 12 HOH HOH . P 5 HOH A 133 633 182 HOH HOH . P 5 HOH A 134 634 317 HOH HOH . P 5 HOH A 135 635 213 HOH HOH . P 5 HOH A 136 636 44 HOH HOH . P 5 HOH A 137 637 313 HOH HOH . P 5 HOH A 138 638 169 HOH HOH . P 5 HOH A 139 639 229 HOH HOH . P 5 HOH A 140 640 333 HOH HOH . P 5 HOH A 141 641 34 HOH HOH . P 5 HOH A 142 642 185 HOH HOH . P 5 HOH A 143 643 131 HOH HOH . P 5 HOH A 144 644 161 HOH HOH . P 5 HOH A 145 645 100 HOH HOH . P 5 HOH A 146 646 92 HOH HOH . P 5 HOH A 147 647 17 HOH HOH . P 5 HOH A 148 648 230 HOH HOH . P 5 HOH A 149 649 268 HOH HOH . P 5 HOH A 150 650 153 HOH HOH . P 5 HOH A 151 651 211 HOH HOH . P 5 HOH A 152 652 101 HOH HOH . P 5 HOH A 153 653 94 HOH HOH . P 5 HOH A 154 654 4 HOH HOH . P 5 HOH A 155 655 57 HOH HOH . P 5 HOH A 156 656 149 HOH HOH . P 5 HOH A 157 657 289 HOH HOH . P 5 HOH A 158 658 120 HOH HOH . P 5 HOH A 159 659 157 HOH HOH . P 5 HOH A 160 660 128 HOH HOH . P 5 HOH A 161 661 232 HOH HOH . P 5 HOH A 162 662 194 HOH HOH . P 5 HOH A 163 663 116 HOH HOH . P 5 HOH A 164 664 97 HOH HOH . P 5 HOH A 165 665 273 HOH HOH . P 5 HOH A 166 666 196 HOH HOH . P 5 HOH A 167 667 291 HOH HOH . P 5 HOH A 168 668 209 HOH HOH . P 5 HOH A 169 669 187 HOH HOH . P 5 HOH A 170 670 159 HOH HOH . P 5 HOH A 171 671 98 HOH HOH . P 5 HOH A 172 672 84 HOH HOH . P 5 HOH A 173 673 89 HOH HOH . P 5 HOH A 174 674 102 HOH HOH . P 5 HOH A 175 675 253 HOH HOH . P 5 HOH A 176 676 175 HOH HOH . P 5 HOH A 177 677 278 HOH HOH . P 5 HOH A 178 678 164 HOH HOH . P 5 HOH A 179 679 54 HOH HOH . P 5 HOH A 180 680 233 HOH HOH . P 5 HOH A 181 681 45 HOH HOH . P 5 HOH A 182 682 193 HOH HOH . P 5 HOH A 183 683 115 HOH HOH . P 5 HOH A 184 684 87 HOH HOH . P 5 HOH A 185 685 202 HOH HOH . P 5 HOH A 186 686 142 HOH HOH . P 5 HOH A 187 687 95 HOH HOH . P 5 HOH A 188 688 112 HOH HOH . P 5 HOH A 189 689 56 HOH HOH . P 5 HOH A 190 690 203 HOH HOH . P 5 HOH A 191 691 241 HOH HOH . P 5 HOH A 192 692 207 HOH HOH . P 5 HOH A 193 693 205 HOH HOH . P 5 HOH A 194 694 48 HOH HOH . P 5 HOH A 195 695 63 HOH HOH . P 5 HOH A 196 696 52 HOH HOH . P 5 HOH A 197 697 136 HOH HOH . P 5 HOH A 198 698 267 HOH HOH . P 5 HOH A 199 699 154 HOH HOH . P 5 HOH A 200 700 61 HOH HOH . P 5 HOH A 201 701 148 HOH HOH . P 5 HOH A 202 702 234 HOH HOH . P 5 HOH A 203 703 122 HOH HOH . P 5 HOH A 204 704 168 HOH HOH . P 5 HOH A 205 705 321 HOH HOH . P 5 HOH A 206 706 167 HOH HOH . P 5 HOH A 207 707 226 HOH HOH . P 5 HOH A 208 708 201 HOH HOH . P 5 HOH A 209 709 257 HOH HOH . P 5 HOH A 210 710 119 HOH HOH . P 5 HOH A 211 711 11 HOH HOH . P 5 HOH A 212 712 179 HOH HOH . P 5 HOH A 213 713 47 HOH HOH . P 5 HOH A 214 714 303 HOH HOH . P 5 HOH A 215 715 216 HOH HOH . P 5 HOH A 216 716 139 HOH HOH . P 5 HOH A 217 717 53 HOH HOH . P 5 HOH A 218 718 208 HOH HOH . P 5 HOH A 219 719 336 HOH HOH . P 5 HOH A 220 720 309 HOH HOH . P 5 HOH A 221 721 254 HOH HOH . P 5 HOH A 222 722 7 HOH HOH . P 5 HOH A 223 723 271 HOH HOH . P 5 HOH A 224 724 304 HOH HOH . P 5 HOH A 225 725 245 HOH HOH . P 5 HOH A 226 726 285 HOH HOH . P 5 HOH A 227 727 244 HOH HOH . P 5 HOH A 228 728 176 HOH HOH . P 5 HOH A 229 729 41 HOH HOH . P 5 HOH A 230 730 90 HOH HOH . P 5 HOH A 231 731 162 HOH HOH . P 5 HOH A 232 732 155 HOH HOH . P 5 HOH A 233 733 210 HOH HOH . P 5 HOH A 234 734 200 HOH HOH . P 5 HOH A 235 735 107 HOH HOH . P 5 HOH A 236 736 281 HOH HOH . P 5 HOH A 237 737 294 HOH HOH . P 5 HOH A 238 738 183 HOH HOH . P 5 HOH A 239 739 286 HOH HOH . P 5 HOH A 240 740 250 HOH HOH . P 5 HOH A 241 741 330 HOH HOH . P 5 HOH A 242 742 255 HOH HOH . P 5 HOH A 243 743 332 HOH HOH . P 5 HOH A 244 744 318 HOH HOH . P 5 HOH A 245 745 324 HOH HOH . P 5 HOH A 246 746 30 HOH HOH . P 5 HOH A 247 747 214 HOH HOH . P 5 HOH A 248 748 173 HOH HOH . P 5 HOH A 249 749 301 HOH HOH . P 5 HOH A 250 750 204 HOH HOH . P 5 HOH A 251 751 224 HOH HOH . P 5 HOH A 252 752 322 HOH HOH . P 5 HOH A 253 753 292 HOH HOH . P 5 HOH A 254 754 105 HOH HOH . P 5 HOH A 255 755 247 HOH HOH . P 5 HOH A 256 756 130 HOH HOH . P 5 HOH A 257 757 228 HOH HOH . P 5 HOH A 258 758 282 HOH HOH . P 5 HOH A 259 759 329 HOH HOH . P 5 HOH A 260 760 274 HOH HOH . P 5 HOH A 261 761 300 HOH HOH . P 5 HOH A 262 762 276 HOH HOH . P 5 HOH A 263 763 308 HOH HOH . P 5 HOH A 264 764 283 HOH HOH . P 5 HOH A 265 765 327 HOH HOH . P 5 HOH A 266 766 31 HOH HOH . P 5 HOH A 267 767 290 HOH HOH . P 5 HOH A 268 768 270 HOH HOH . P 5 HOH A 269 769 251 HOH HOH . P 5 HOH A 270 770 217 HOH HOH . P 5 HOH A 271 771 310 HOH HOH . P 5 HOH A 272 772 191 HOH HOH . P 5 HOH A 273 773 296 HOH HOH . P 5 HOH A 274 774 272 HOH HOH . P 5 HOH A 275 775 295 HOH HOH . P 5 HOH A 276 776 293 HOH HOH . P 5 HOH A 277 777 222 HOH HOH . P 5 HOH A 278 778 166 HOH HOH . P 5 HOH A 279 779 323 HOH HOH . P 5 HOH A 280 780 160 HOH HOH . P 5 HOH A 281 781 325 HOH HOH . P 5 HOH A 282 782 307 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 2 -3.538 -2.278 -20.76 1 41.52 ? C1 EDO 403 A 1 HETATM 2 O O1 EDO . . . D 2 -3.776 -3.277 -19.774 1 40.5 ? O1 EDO 403 A 1 HETATM 3 C C2 EDO . . . D 2 -2.07 -2.365 -21.155 1 42.17 ? C2 EDO 403 A 1 HETATM 4 O O2 EDO . . . D 2 -1.511 -1.063 -21.101 1 43.16 ? O2 EDO 403 A 1 HETATM 5 H H11 EDO . . . D 2 -4.176 -2.443 -21.63 1 49.83 ? H11 EDO 403 A 1 HETATM 6 H H12 EDO . . . D 2 -3.766 -1.288 -20.359 1 49.83 ? H12 EDO 403 A 1 HETATM 7 H HO1 EDO . . . D 2 -4.719 -3.303 -19.562 1 48.61 ? HO1 EDO 403 A 1 HETATM 8 H H21 EDO . . . D 2 -1.977 -2.772 -22.163 1 50.61 ? H21 EDO 403 A 1 HETATM 9 H H22 EDO . . . D 2 -1.537 -3.031 -20.473 1 50.61 ? H22 EDO 403 A 1 HETATM 10 H HO2 EDO . . . D 2 -0.547 -1.124 -21.143 1 51.8 ? HO2 EDO 403 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 10 #