data_8QCF # _model_server_result.job_id FegfdG6iWlqVzCxU3zuUEg _model_server_result.datetime_utc '2024-11-02 13:38:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qcf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":1101}' # _entry.id 8QCF # _exptl.entry_id 8QCF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 14 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8QCF _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QCF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 13-meric _pdbx_struct_assembly.oligomeric_count 13 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 14 _struct_asym.id N _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 109 n n PG O2G ATP sing 110 n n PG O3G ATP sing 111 n n PG O3B ATP sing 112 n n O2G HOG2 ATP sing 113 n n O3G HOG3 ATP sing 114 n n PB O1B ATP doub 115 n n PB O2B ATP sing 116 n n PB O3B ATP sing 117 n n PB O3A ATP sing 118 n n O2B HOB2 ATP sing 119 n n PA O1A ATP doub 120 n n PA O2A ATP sing 121 n n PA O3A ATP sing 122 n n PA O5' ATP sing 123 n n O2A HOA2 ATP sing 124 n n O5' C5' ATP sing 125 n n C5' C4' ATP sing 126 n n C5' "H5'1" ATP sing 127 n n C5' "H5'2" ATP sing 128 n n C4' O4' ATP sing 129 n n C4' C3' ATP sing 130 n n C4' H4' ATP sing 131 n n O4' C1' ATP sing 132 n n C3' O3' ATP sing 133 n n C3' C2' ATP sing 134 n n C3' H3' ATP sing 135 n n O3' HO3' ATP sing 136 n n C2' O2' ATP sing 137 n n C2' C1' ATP sing 138 n n C2' H2' ATP sing 139 n n O2' HO2' ATP sing 140 n n C1' N9 ATP sing 141 n n C1' H1' ATP sing 142 n n N9 C8 ATP sing 143 n y N9 C4 ATP sing 144 n y C8 N7 ATP doub 145 n y C8 H8 ATP sing 146 n n N7 C5 ATP sing 147 n y C5 C6 ATP sing 148 n y C5 C4 ATP doub 149 n y C6 N6 ATP sing 150 n n C6 N1 ATP doub 151 n y N6 HN61 ATP sing 152 n n N6 HN62 ATP sing 153 n n N1 C2 ATP sing 154 n y C2 N3 ATP doub 155 n y C2 H2 ATP sing 156 n n N3 C4 ATP sing 157 n y # _atom_sites.entry_id 8QCF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id N _pdbx_nonpoly_scheme.entity_id 14 _pdbx_nonpoly_scheme.mon_id ATP _pdbx_nonpoly_scheme.pdb_strand_id M _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1101 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id ATP _pdbx_nonpoly_scheme.auth_mon_id 1 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . N 14 107.451 167.62 84.705 1 113.19 ? PG ATP 1101 M 1 HETATM 2 O O1G ATP . . . N 14 106.42 167.212 85.728 1 106.17 ? O1G ATP 1101 M 1 HETATM 3 O O2G ATP . . . N 14 107.261 169.075 84.35 1 107.55 ? O2G ATP 1101 M 1 HETATM 4 O O3G ATP . . . N 14 108.831 167.419 85.279 1 107.28 ? O3G ATP 1101 M 1 HETATM 5 P PB ATP . . . N 14 108.506 166.188 82.393 1 106.78 ? PB ATP 1101 M 1 HETATM 6 O O1B ATP . . . N 14 109.055 167.359 81.616 1 104.07 ? O1B ATP 1101 M 1 HETATM 7 O O2B ATP . . . N 14 109.599 165.587 83.242 1 103.81 ? O2B ATP 1101 M 1 HETATM 8 O O3B ATP . . . N 14 107.265 166.696 83.353 1 109.27 ? O3B ATP 1101 M 1 HETATM 9 P PA ATP . . . N 14 108.407 163.474 81.359 1 105.91 ? PA ATP 1101 M 1 HETATM 10 O O1A ATP . . . N 14 109.906 163.387 81.246 1 105.88 ? O1A ATP 1101 M 1 HETATM 11 O O2A ATP . . . N 14 107.977 162.831 82.654 1 106.07 ? O2A ATP 1101 M 1 HETATM 12 O O3A ATP . . . N 14 107.944 165.053 81.343 1 105.83 ? O3A ATP 1101 M 1 HETATM 13 O O5' ATP . . . N 14 107.707 162.692 80.088 1 106.57 ? O5' ATP 1101 M 1 HETATM 14 C C5' ATP . . . N 14 106.993 161.519 80.346 1 105.04 ? C5' ATP 1101 M 1 HETATM 15 C C4' ATP . . . N 14 106.988 160.636 79.058 1 105.56 ? C4' ATP 1101 M 1 HETATM 16 O O4' ATP . . . N 14 107.467 161.274 78.067 1 104.31 ? O4' ATP 1101 M 1 HETATM 17 C C3' ATP . . . N 14 107.952 159.423 79.24 1 106.84 ? C3' ATP 1101 M 1 HETATM 18 O O3' ATP . . . N 14 107.25 158.312 79.591 1 106.3 ? O3' ATP 1101 M 1 HETATM 19 C C2' ATP . . . N 14 108.604 159.228 77.883 1 106.17 ? C2' ATP 1101 M 1 HETATM 20 O O2' ATP . . . N 14 108.298 157.845 77.367 1 105.98 ? O2' ATP 1101 M 1 HETATM 21 C C1' ATP . . . N 14 108.07 160.123 77.099 1 105.67 ? C1' ATP 1101 M 1 HETATM 22 N N9 ATP . . . N 14 109.071 160.674 76.225 1 105.09 ? N9 ATP 1101 M 1 HETATM 23 C C8 ATP . . . N 14 110.124 161.378 76.603 1 105.68 ? C8 ATP 1101 M 1 HETATM 24 N N7 ATP . . . N 14 110.829 161.723 75.54 1 105.29 ? N7 ATP 1101 M 1 HETATM 25 C C5 ATP . . . N 14 110.211 161.227 74.457 1 105.53 ? C5 ATP 1101 M 1 HETATM 26 C C6 ATP . . . N 14 110.481 161.267 73.077 1 104.81 ? C6 ATP 1101 M 1 HETATM 27 N N6 ATP . . . N 14 111.65 161.958 72.568 1 103.78 ? N6 ATP 1101 M 1 HETATM 28 N N1 ATP . . . N 14 109.644 160.657 72.252 1 105.4 ? N1 ATP 1101 M 1 HETATM 29 C C2 ATP . . . N 14 108.571 160.019 72.696 1 105.33 ? C2 ATP 1101 M 1 HETATM 30 N N3 ATP . . . N 14 108.291 159.964 73.986 1 104.77 ? N3 ATP 1101 M 1 HETATM 31 C C4 ATP . . . N 14 109.087 160.555 74.888 1 105.21 ? C4 ATP 1101 M 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 218 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #