data_8QCJ # _model_server_result.job_id vDmAYVn6XUz2b7tvqZgnSQ _model_server_result.datetime_utc '2024-11-14 04:01:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qcj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 8QCJ # _exptl.entry_id 8QCJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8QCJ _cell.length_a 92.965 _cell.length_b 92.965 _cell.length_c 100.223 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QCJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 39 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 39 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 44 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 44 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.909 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 8QCJ _atom_sites.fract_transf_matrix[1][1] 0.010757 _atom_sites.fract_transf_matrix[1][2] 0.00621 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012421 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009978 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 501 501 FAD FAD . D 2 FAD B 1 501 501 FAD FAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . C 2 -10.837 33.983 6.906 1 66.47 ? PA FAD 501 A 1 HETATM 2 O O1A FAD . . . C 2 -9.777 34.461 5.986 1 68.85 -1 O1A FAD 501 A 1 HETATM 3 O O2A FAD . . . C 2 -11.56 35.096 7.671 1 73.46 ? O2A FAD 501 A 1 HETATM 4 O O5B FAD . . . C 2 -10.237 32.928 7.9 1 69.85 ? O5B FAD 501 A 1 HETATM 5 C C5B FAD . . . C 2 -9.004 32.241 7.602 1 72.43 ? C5B FAD 501 A 1 HETATM 6 C C4B FAD . . . C 2 -8.052 32.441 8.751 1 70.98 ? C4B FAD 501 A 1 HETATM 7 O O4B FAD . . . C 2 -7.178 31.296 8.864 1 71.26 ? O4B FAD 501 A 1 HETATM 8 C C3B FAD . . . C 2 -7.154 33.673 8.633 1 71.16 ? C3B FAD 501 A 1 HETATM 9 O O3B FAD . . . C 2 -7.122 34.406 9.852 1 71.93 ? O3B FAD 501 A 1 HETATM 10 C C2B FAD . . . C 2 -5.789 33.083 8.263 1 72.03 ? C2B FAD 501 A 1 HETATM 11 O O2B FAD . . . C 2 -4.72 33.865 8.782 1 70.98 ? O2B FAD 501 A 1 HETATM 12 C C1B FAD . . . C 2 -5.841 31.73 8.966 1 73.35 ? C1B FAD 501 A 1 HETATM 13 N N9A FAD . . . C 2 -4.982 30.715 8.367 1 73.92 ? N9A FAD 501 A 1 HETATM 14 C C8A FAD . . . C 2 -4.838 30.439 7.033 1 74.88 ? C8A FAD 501 A 1 HETATM 15 N N7A FAD . . . C 2 -3.992 29.47 6.775 1 76 ? N7A FAD 501 A 1 HETATM 16 C C5A FAD . . . C 2 -3.547 29.081 8.029 1 77.24 ? C5A FAD 501 A 1 HETATM 17 C C6A FAD . . . C 2 -2.634 28.095 8.45 1 81.1 ? C6A FAD 501 A 1 HETATM 18 N N6A FAD . . . C 2 -1.973 27.288 7.615 1 79.7 ? N6A FAD 501 A 1 HETATM 19 N N1A FAD . . . C 2 -2.418 27.965 9.777 1 83.88 ? N1A FAD 501 A 1 HETATM 20 C C2A FAD . . . C 2 -3.073 28.77 10.618 1 80.86 ? C2A FAD 501 A 1 HETATM 21 N N3A FAD . . . C 2 -3.954 29.733 10.34 1 75.53 ? N3A FAD 501 A 1 HETATM 22 C C4A FAD . . . C 2 -4.15 29.839 9.021 1 74.58 ? C4A FAD 501 A 1 HETATM 23 N N1 FAD . . . C 2 -18.105 38.447 2.409 1 67.17 ? N1 FAD 501 A 1 HETATM 24 C C2 FAD . . . C 2 -19.413 38.799 2.576 1 67.56 ? C2 FAD 501 A 1 HETATM 25 O O2 FAD . . . C 2 -20.288 37.96 2.818 1 69.45 ? O2 FAD 501 A 1 HETATM 26 N N3 FAD . . . C 2 -19.783 40.128 2.476 1 67.67 ? N3 FAD 501 A 1 HETATM 27 C C4 FAD . . . C 2 -18.942 41.189 2.214 1 68.1 ? C4 FAD 501 A 1 HETATM 28 O O4 FAD . . . C 2 -19.391 42.331 2.149 1 71.01 ? O4 FAD 501 A 1 HETATM 29 C C4X FAD . . . C 2 -17.554 40.805 2.036 1 66.23 ? C4X FAD 501 A 1 HETATM 30 N N5 FAD . . . C 2 -16.682 41.747 1.782 1 67.92 ? N5 FAD 501 A 1 HETATM 31 C C5X FAD . . . C 2 -15.356 41.375 1.613 1 65.21 ? C5X FAD 501 A 1 HETATM 32 C C6 FAD . . . C 2 -14.407 42.362 1.341 1 63.95 ? C6 FAD 501 A 1 HETATM 33 C C7 FAD . . . C 2 -13.065 42.037 1.163 1 61.27 ? C7 FAD 501 A 1 HETATM 34 C C7M FAD . . . C 2 -12.068 43.127 0.872 1 58.47 ? C7M FAD 501 A 1 HETATM 35 C C8 FAD . . . C 2 -12.66 40.695 1.26 1 61.5 ? C8 FAD 501 A 1 HETATM 36 C C8M FAD . . . C 2 -11.219 40.302 1.073 1 62.79 ? C8M FAD 501 A 1 HETATM 37 C C9 FAD . . . C 2 -13.604 39.71 1.528 1 63.63 ? C9 FAD 501 A 1 HETATM 38 C C9A FAD . . . C 2 -14.941 40.039 1.708 1 67.43 ? C9A FAD 501 A 1 HETATM 39 N N10 FAD . . . C 2 -15.917 39.058 1.979 1 67.77 ? N10 FAD 501 A 1 HETATM 40 C C10 FAD . . . C 2 -17.232 39.407 2.153 1 66.93 ? C10 FAD 501 A 1 HETATM 41 C C1' FAD . . . C 2 -15.544 37.643 2.098 1 67.49 ? C1' FAD 501 A 1 HETATM 42 C C2' FAD . . . C 2 -15.164 37.248 3.52 1 68.54 ? C2' FAD 501 A 1 HETATM 43 O O2' FAD . . . C 2 -13.909 37.824 3.883 1 67.31 ? O2' FAD 501 A 1 HETATM 44 C C3' FAD . . . C 2 -15.057 35.726 3.615 1 69.14 ? C3' FAD 501 A 1 HETATM 45 O O3' FAD . . . C 2 -16.132 35.139 2.891 1 70.4 ? O3' FAD 501 A 1 HETATM 46 C C4' FAD . . . C 2 -15.08 35.21 5.054 1 71.07 ? C4' FAD 501 A 1 HETATM 47 O O4' FAD . . . C 2 -14.144 35.953 5.835 1 72.34 ? O4' FAD 501 A 1 HETATM 48 C C5' FAD . . . C 2 -14.799 33.727 5.164 1 71.39 ? C5' FAD 501 A 1 HETATM 49 O O5' FAD . . . C 2 -14.352 33.431 6.504 1 71.42 ? O5' FAD 501 A 1 HETATM 50 P P FAD . . . C 2 -13.16 32.435 6.766 1 66.23 ? P FAD 501 A 1 HETATM 51 O O1P FAD . . . C 2 -12.88 32.334 8.269 1 75.68 -1 O1P FAD 501 A 1 HETATM 52 O O2P FAD . . . C 2 -13.409 31.142 6.083 1 74.07 ? O2P FAD 501 A 1 HETATM 53 O O3P FAD . . . C 2 -11.931 33.17 6.097 1 68.06 ? O3P FAD 501 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 53 #