data_8QCM # _model_server_result.job_id 3Jw8OA5REkTDObea3RBE8A _model_server_result.datetime_utc '2024-12-03 20:56:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qcm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":701}' # _entry.id 8QCM # _exptl.entry_id 8QCM _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 431.527 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2~{S},5~{S},8~{S})-14-methoxy-2-(2-methylpropyl)-5-(phenylmethyl)-3,6,17-triazatetracyclo[8.7.0.0^{3,8}.0^{11,16}]heptadeca-1(10),11,13,15-tetraene-4,7-dione _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8QCM _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QCM _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 M N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n G NAG 1 X 1 NAG X 1102 NAG 4 n G NAG 2 X 2 NAG X 1103 NAG 4 n H NAG 1 G 1 NAG X 1104 NAG 4 n H NAG 2 G 2 NAG X 1105 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 602 A CYS 592 1_555 A SG CYS 618 A CYS 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 23 C CYS 23 1_555 B SG CYS 88 C CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 C SG CYS 22 D CYS 22 1_555 C SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf4 D SG CYS 23 E CYS 23 1_555 D SG CYS 88 E CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf5 E SG CYS 22 F CYS 22 1_555 E SG CYS 96 F CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf6 F SG CYS 602 B CYS 592 1_555 F SG CYS 618 B CYS 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 G O4 NAG . X NAG 1 1_555 G C1 NAG . X NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 H O4 NAG . G NAG 1 1_555 H C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C26 H29 N3 O3' _chem_comp.formula_weight 431.527 _chem_comp.id V0U _chem_comp.mon_nstd_flag . _chem_comp.name (2~{S},5~{S},8~{S})-14-methoxy-2-(2-methylpropyl)-5-(phenylmethyl)-3,6,17-triazatetracyclo[8.7.0.0^{3,8}.0^{11,16}]heptadeca-1(10),11,13,15-tetraene-4,7-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O02 C01 V0U sing 465 n n C03 O02 V0U sing 466 n n C04 C03 V0U doub 467 n y C05 C04 V0U sing 468 n y C06 C05 V0U doub 469 n y C08 C07 V0U doub 470 n y C07 C06 V0U sing 471 n y C09 C06 V0U sing 472 n y C10 C09 V0U doub 473 n y N11 C10 V0U sing 474 n y C12 C10 V0U sing 475 n n C14 C13 V0U sing 476 n n C15 C14 V0U sing 477 n n C16 C14 V0U sing 478 n n C13 C12 V0U sing 479 n n N17 C12 V0U sing 480 n n C18 N17 V0U sing 481 n n C19 C18 V0U sing 482 n n C20 C18 V0U sing 483 n n O21 C20 V0U doub 484 n n N22 C20 V0U sing 485 n n C23 N22 V0U sing 486 n n C25 C24 V0U sing 487 n n C26 C25 V0U doub 488 n y C27 C26 V0U sing 489 n y C28 C27 V0U doub 490 n y C29 C28 V0U sing 491 n y C30 C29 V0U doub 492 n y C24 C23 V0U sing 493 n n C31 C23 V0U sing 494 n n O32 C31 V0U doub 495 n n C03 C08 V0U sing 496 n y C05 N11 V0U sing 497 n y C09 C19 V0U sing 498 n n N17 C31 V0U sing 499 n n C25 C30 V0U sing 500 n y C01 H012 V0U sing 501 n n C01 H013 V0U sing 502 n n C01 H011 V0U sing 503 n n C04 H041 V0U sing 504 n n C08 H081 V0U sing 505 n n C12 H121 V0U sing 506 n n C13 H132 V0U sing 507 n n C13 H131 V0U sing 508 n n C14 H141 V0U sing 509 n n C15 H152 V0U sing 510 n n C15 H153 V0U sing 511 n n C15 H151 V0U sing 512 n n C16 H163 V0U sing 513 n n C16 H162 V0U sing 514 n n C16 H161 V0U sing 515 n n C18 H181 V0U sing 516 n n C19 H192 V0U sing 517 n n C19 H191 V0U sing 518 n n C23 H231 V0U sing 519 n n C26 H261 V0U sing 520 n n C27 H271 V0U sing 521 n n C28 H281 V0U sing 522 n n C29 H291 V0U sing 523 n n C07 H071 V0U sing 524 n n C24 H242 V0U sing 525 n n C24 H241 V0U sing 526 n n C30 H301 V0U sing 527 n n N11 H111 V0U sing 528 n n N22 H221 V0U sing 529 n n # _atom_sites.entry_id 8QCM _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 V0U A 1 701 1105 V0U BWQ . J 6 CLR A 1 702 1803 CLR CLR . K 6 CLR A 1 703 1804 CLR CLR . L 6 CLR A 1 704 1807 CLR CLR . M 5 V0U B 1 701 1104 V0U BWQ . N 6 CLR B 1 702 1805 CLR CLR . O 6 CLR B 1 703 1806 CLR CLR . P 6 CLR B 1 704 1808 CLR CLR . Q 7 HOH A 1 801 14 HOH HOH . Q 7 HOH A 2 802 39 HOH HOH . Q 7 HOH A 3 803 4 HOH HOH . Q 7 HOH A 4 804 38 HOH HOH . Q 7 HOH A 5 805 42 HOH HOH . Q 7 HOH A 6 806 20 HOH HOH . Q 7 HOH A 7 807 21 HOH HOH . Q 7 HOH A 8 808 35 HOH HOH . Q 7 HOH A 9 809 2 HOH HOH . Q 7 HOH A 10 810 41 HOH HOH . Q 7 HOH A 11 811 9 HOH HOH . Q 7 HOH A 12 812 46 HOH HOH . Q 7 HOH A 13 813 7 HOH HOH . Q 7 HOH A 14 814 18 HOH HOH . Q 7 HOH A 15 815 22 HOH HOH . Q 7 HOH A 16 816 12 HOH HOH . Q 7 HOH A 17 817 54 HOH HOH . Q 7 HOH A 18 818 37 HOH HOH . Q 7 HOH A 19 819 48 HOH HOH . Q 7 HOH A 20 820 50 HOH HOH . Q 7 HOH A 21 821 19 HOH HOH . Q 7 HOH A 22 822 5 HOH HOH . Q 7 HOH A 23 823 51 HOH HOH . R 7 HOH C 1 301 45 HOH HOH . R 7 HOH C 2 302 43 HOH HOH . S 7 HOH E 1 301 47 HOH HOH . S 7 HOH E 2 302 13 HOH HOH . T 7 HOH B 1 801 36 HOH HOH . T 7 HOH B 2 802 23 HOH HOH . T 7 HOH B 3 803 26 HOH HOH . T 7 HOH B 4 804 3 HOH HOH . T 7 HOH B 5 805 33 HOH HOH . T 7 HOH B 6 806 1 HOH HOH . T 7 HOH B 7 807 44 HOH HOH . T 7 HOH B 8 808 30 HOH HOH . T 7 HOH B 9 809 34 HOH HOH . T 7 HOH B 10 810 40 HOH HOH . T 7 HOH B 11 811 10 HOH HOH . T 7 HOH B 12 812 27 HOH HOH . T 7 HOH B 13 813 31 HOH HOH . T 7 HOH B 14 814 29 HOH HOH . T 7 HOH B 15 815 11 HOH HOH . T 7 HOH B 16 816 15 HOH HOH . T 7 HOH B 17 817 8 HOH HOH . T 7 HOH B 18 818 53 HOH HOH . T 7 HOH B 19 819 28 HOH HOH . T 7 HOH B 20 820 32 HOH HOH . T 7 HOH B 21 821 25 HOH HOH . T 7 HOH B 22 822 17 HOH HOH . T 7 HOH B 23 823 6 HOH HOH . T 7 HOH B 24 824 24 HOH HOH . T 7 HOH B 25 825 52 HOH HOH . T 7 HOH B 26 826 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 V0U . . . I 5 124.457 127.7 126.537 1 33.74 ? C01 V0U 701 A 1 HETATM 2 C C03 V0U . . . I 5 123.581 128.22 128.612 1 33.74 ? C03 V0U 701 A 1 HETATM 3 C C04 V0U . . . I 5 122.502 128.519 129.44 1 33.74 ? C04 V0U 701 A 1 HETATM 4 C C05 V0U . . . I 5 122.719 128.787 130.843 1 33.74 ? C05 V0U 701 A 1 HETATM 5 C C06 V0U . . . I 5 123.959 128.751 131.348 1 33.74 ? C06 V0U 701 A 1 HETATM 6 C C08 V0U . . . I 5 124.86 128.178 129.141 1 33.74 ? C08 V0U 701 A 1 HETATM 7 C C09 V0U . . . I 5 123.808 129.064 132.765 1 33.74 ? C09 V0U 701 A 1 HETATM 8 C C10 V0U . . . I 5 122.504 129.272 133.014 1 33.74 ? C10 V0U 701 A 1 HETATM 9 C C12 V0U . . . I 5 122.016 129.603 134.418 1 33.74 ? C12 V0U 701 A 1 HETATM 10 C C13 V0U . . . I 5 121.965 131.145 134.667 1 33.74 ? C13 V0U 701 A 1 HETATM 11 C C14 V0U . . . I 5 120.602 131.795 134.209 1 33.74 ? C14 V0U 701 A 1 HETATM 12 C C15 V0U . . . I 5 119.418 131.261 135.073 1 33.74 ? C15 V0U 701 A 1 HETATM 13 C C16 V0U . . . I 5 120.685 133.341 134.289 1 33.74 ? C16 V0U 701 A 1 HETATM 14 C C18 V0U . . . I 5 124.188 128.525 135.231 1 33.74 ? C18 V0U 701 A 1 HETATM 15 C C19 V0U . . . I 5 124.848 129.173 133.898 1 33.74 ? C19 V0U 701 A 1 HETATM 16 C C20 V0U . . . I 5 125.102 128.783 136.43 1 33.74 ? C20 V0U 701 A 1 HETATM 17 C C23 V0U . . . I 5 123.153 128.023 137.747 1 33.74 ? C23 V0U 701 A 1 HETATM 18 C C26 V0U . . . I 5 123.909 129.814 140.583 1 33.74 ? C26 V0U 701 A 1 HETATM 19 C C27 V0U . . . I 5 124.179 131.088 141.077 1 33.74 ? C27 V0U 701 A 1 HETATM 20 C C28 V0U . . . I 5 123.394 132.164 140.682 1 33.74 ? C28 V0U 701 A 1 HETATM 21 C C29 V0U . . . I 5 122.338 131.971 139.791 1 33.74 ? C29 V0U 701 A 1 HETATM 22 C C07 V0U . . . I 5 125.075 128.443 130.506 1 33.74 ? C07 V0U 701 A 1 HETATM 23 C C24 V0U . . . I 5 122.559 128.231 139.154 1 33.74 ? C24 V0U 701 A 1 HETATM 24 C C25 V0U . . . I 5 122.854 129.62 139.685 1 33.74 ? C25 V0U 701 A 1 HETATM 25 C C30 V0U . . . I 5 122.067 130.698 139.3 1 33.74 ? C30 V0U 701 A 1 HETATM 26 C C31 V0U . . . I 5 122.226 128.701 136.748 1 33.74 ? C31 V0U 701 A 1 HETATM 27 N N11 V0U . . . I 5 121.83 129.099 131.844 1 33.74 ? N11 V0U 701 A 1 HETATM 28 N N17 V0U . . . I 5 122.826 128.96 135.454 1 33.74 ? N17 V0U 701 A 1 HETATM 29 N N22 V0U . . . I 5 124.528 128.505 137.745 1 33.74 ? N22 V0U 701 A 1 HETATM 30 O O02 V0U . . . I 5 123.349 127.968 127.283 1 33.74 ? O02 V0U 701 A 1 HETATM 31 O O21 V0U . . . I 5 126.211 129.173 136.295 1 33.74 ? O21 V0U 701 A 1 HETATM 32 O O32 V0U . . . I 5 121.111 129.016 137.001 1 33.74 ? O32 V0U 701 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 32 #