data_8QCM # _model_server_result.job_id uaBIa8spMTuMNQipwx4oZw _model_server_result.datetime_utc '2024-11-07 03:31:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qcm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":704}' # _entry.id 8QCM # _exptl.entry_id 8QCM _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8QCM _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QCM _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 J N N ? 6 K N N ? 6 L N N ? 6 N N N ? 6 O N N ? 6 P N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n G NAG 1 X 1 NAG X 1102 NAG 4 n G NAG 2 X 2 NAG X 1103 NAG 4 n H NAG 1 G 1 NAG X 1104 NAG 4 n H NAG 2 G 2 NAG X 1105 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 602 A CYS 592 1_555 A SG CYS 618 A CYS 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 23 C CYS 23 1_555 B SG CYS 88 C CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 C SG CYS 22 D CYS 22 1_555 C SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf4 D SG CYS 23 E CYS 23 1_555 D SG CYS 88 E CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf5 E SG CYS 22 F CYS 22 1_555 E SG CYS 96 F CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf6 F SG CYS 602 B CYS 592 1_555 F SG CYS 618 B CYS 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 G O4 NAG . X NAG 1 1_555 G C1 NAG . X NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 H O4 NAG . G NAG 1 1_555 H C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 70 n n C1 C10 CLR sing 71 n n C1 H11 CLR sing 72 n n C1 H12 CLR sing 73 n n C2 C3 CLR sing 74 n n C2 H21 CLR sing 75 n n C2 H22 CLR sing 76 n n C3 C4 CLR sing 77 n n C3 O1 CLR sing 78 n n C3 H3 CLR sing 79 n n C4 C5 CLR sing 80 n n C4 H41 CLR sing 81 n n C4 H42 CLR sing 82 n n C5 C6 CLR doub 83 n n C5 C10 CLR sing 84 n n C6 C7 CLR sing 85 n n C6 H6 CLR sing 86 n n C7 C8 CLR sing 87 n n C7 H71 CLR sing 88 n n C7 H72 CLR sing 89 n n C8 C9 CLR sing 90 n n C8 C14 CLR sing 91 n n C8 H8 CLR sing 92 n n C9 C10 CLR sing 93 n n C9 C11 CLR sing 94 n n C9 H9 CLR sing 95 n n C10 C19 CLR sing 96 n n C11 C12 CLR sing 97 n n C11 H111 CLR sing 98 n n C11 H112 CLR sing 99 n n C12 C13 CLR sing 100 n n C12 H121 CLR sing 101 n n C12 H122 CLR sing 102 n n C13 C14 CLR sing 103 n n C13 C17 CLR sing 104 n n C13 C18 CLR sing 105 n n C14 C15 CLR sing 106 n n C14 H14 CLR sing 107 n n C15 C16 CLR sing 108 n n C15 H151 CLR sing 109 n n C15 H152 CLR sing 110 n n C16 C17 CLR sing 111 n n C16 H161 CLR sing 112 n n C16 H162 CLR sing 113 n n C17 C20 CLR sing 114 n n C17 H17 CLR sing 115 n n C18 H181 CLR sing 116 n n C18 H182 CLR sing 117 n n C18 H183 CLR sing 118 n n C19 H191 CLR sing 119 n n C19 H192 CLR sing 120 n n C19 H193 CLR sing 121 n n C20 C21 CLR sing 122 n n C20 C22 CLR sing 123 n n C20 H20 CLR sing 124 n n C21 H211 CLR sing 125 n n C21 H212 CLR sing 126 n n C21 H213 CLR sing 127 n n C22 C23 CLR sing 128 n n C22 H221 CLR sing 129 n n C22 H222 CLR sing 130 n n C23 C24 CLR sing 131 n n C23 H231 CLR sing 132 n n C23 H232 CLR sing 133 n n C24 C25 CLR sing 134 n n C24 H241 CLR sing 135 n n C24 H242 CLR sing 136 n n C25 C26 CLR sing 137 n n C25 C27 CLR sing 138 n n C25 H25 CLR sing 139 n n C26 H261 CLR sing 140 n n C26 H262 CLR sing 141 n n C26 H263 CLR sing 142 n n C27 H271 CLR sing 143 n n C27 H272 CLR sing 144 n n C27 H273 CLR sing 145 n n O1 H1 CLR sing 146 n n # _atom_sites.entry_id 8QCM _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 V0U A 1 701 1105 V0U BWQ . J 6 CLR A 1 702 1803 CLR CLR . K 6 CLR A 1 703 1804 CLR CLR . L 6 CLR A 1 704 1807 CLR CLR . M 5 V0U B 1 701 1104 V0U BWQ . N 6 CLR B 1 702 1805 CLR CLR . O 6 CLR B 1 703 1806 CLR CLR . P 6 CLR B 1 704 1808 CLR CLR . Q 7 HOH A 1 801 14 HOH HOH . Q 7 HOH A 2 802 39 HOH HOH . Q 7 HOH A 3 803 4 HOH HOH . Q 7 HOH A 4 804 38 HOH HOH . Q 7 HOH A 5 805 42 HOH HOH . Q 7 HOH A 6 806 20 HOH HOH . Q 7 HOH A 7 807 21 HOH HOH . Q 7 HOH A 8 808 35 HOH HOH . Q 7 HOH A 9 809 2 HOH HOH . Q 7 HOH A 10 810 41 HOH HOH . Q 7 HOH A 11 811 9 HOH HOH . Q 7 HOH A 12 812 46 HOH HOH . Q 7 HOH A 13 813 7 HOH HOH . Q 7 HOH A 14 814 18 HOH HOH . Q 7 HOH A 15 815 22 HOH HOH . Q 7 HOH A 16 816 12 HOH HOH . Q 7 HOH A 17 817 54 HOH HOH . Q 7 HOH A 18 818 37 HOH HOH . Q 7 HOH A 19 819 48 HOH HOH . Q 7 HOH A 20 820 50 HOH HOH . Q 7 HOH A 21 821 19 HOH HOH . Q 7 HOH A 22 822 5 HOH HOH . Q 7 HOH A 23 823 51 HOH HOH . R 7 HOH C 1 301 45 HOH HOH . R 7 HOH C 2 302 43 HOH HOH . S 7 HOH E 1 301 47 HOH HOH . S 7 HOH E 2 302 13 HOH HOH . T 7 HOH B 1 801 36 HOH HOH . T 7 HOH B 2 802 23 HOH HOH . T 7 HOH B 3 803 26 HOH HOH . T 7 HOH B 4 804 3 HOH HOH . T 7 HOH B 5 805 33 HOH HOH . T 7 HOH B 6 806 1 HOH HOH . T 7 HOH B 7 807 44 HOH HOH . T 7 HOH B 8 808 30 HOH HOH . T 7 HOH B 9 809 34 HOH HOH . T 7 HOH B 10 810 40 HOH HOH . T 7 HOH B 11 811 10 HOH HOH . T 7 HOH B 12 812 27 HOH HOH . T 7 HOH B 13 813 31 HOH HOH . T 7 HOH B 14 814 29 HOH HOH . T 7 HOH B 15 815 11 HOH HOH . T 7 HOH B 16 816 15 HOH HOH . T 7 HOH B 17 817 8 HOH HOH . T 7 HOH B 18 818 53 HOH HOH . T 7 HOH B 19 819 28 HOH HOH . T 7 HOH B 20 820 32 HOH HOH . T 7 HOH B 21 821 25 HOH HOH . T 7 HOH B 22 822 17 HOH HOH . T 7 HOH B 23 823 6 HOH HOH . T 7 HOH B 24 824 24 HOH HOH . T 7 HOH B 25 825 52 HOH HOH . T 7 HOH B 26 826 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . L 6 103.19 105.156 144.064 1 54.82 ? C1 CLR 704 A 1 HETATM 2 C C2 CLR . . . L 6 103.038 104.439 145.403 1 54.82 ? C2 CLR 704 A 1 HETATM 3 C C3 CLR . . . L 6 103.958 103.209 145.514 1 54.82 ? C3 CLR 704 A 1 HETATM 4 C C4 CLR . . . L 6 105.405 103.651 145.208 1 54.82 ? C4 CLR 704 A 1 HETATM 5 C C5 CLR . . . L 6 105.605 104.464 143.934 1 54.82 ? C5 CLR 704 A 1 HETATM 6 C C6 CLR . . . L 6 106.747 104.356 143.236 1 54.82 ? C6 CLR 704 A 1 HETATM 7 C C7 CLR . . . L 6 107.099 105.274 142.053 1 54.82 ? C7 CLR 704 A 1 HETATM 8 C C8 CLR . . . L 6 106.178 106.523 141.954 1 54.82 ? C8 CLR 704 A 1 HETATM 9 C C9 CLR . . . L 6 104.723 106.165 142.358 1 54.82 ? C9 CLR 704 A 1 HETATM 10 C C10 CLR . . . L 6 104.635 105.641 143.804 1 54.82 ? C10 CLR 704 A 1 HETATM 11 C C11 CLR . . . L 6 103.752 107.316 142.074 1 54.82 ? C11 CLR 704 A 1 HETATM 12 C C12 CLR . . . L 6 103.825 107.824 140.626 1 54.82 ? C12 CLR 704 A 1 HETATM 13 C C13 CLR . . . L 6 105.278 108.247 140.26 1 54.82 ? C13 CLR 704 A 1 HETATM 14 C C14 CLR . . . L 6 106.158 106.985 140.515 1 54.82 ? C14 CLR 704 A 1 HETATM 15 C C15 CLR . . . L 6 107.529 107.341 139.87 1 54.82 ? C15 CLR 704 A 1 HETATM 16 C C16 CLR . . . L 6 107.067 108.076 138.541 1 54.82 ? C16 CLR 704 A 1 HETATM 17 C C17 CLR . . . L 6 105.519 108.435 138.728 1 54.82 ? C17 CLR 704 A 1 HETATM 18 C C18 CLR . . . L 6 105.822 109.451 141.037 1 54.82 ? C18 CLR 704 A 1 HETATM 19 C C19 CLR . . . L 6 105.025 106.771 144.802 1 54.82 ? C19 CLR 704 A 1 HETATM 20 C C20 CLR . . . L 6 105.247 109.822 138.143 1 54.82 ? C20 CLR 704 A 1 HETATM 21 C C21 CLR . . . L 6 103.777 110.305 138.159 1 54.82 ? C21 CLR 704 A 1 HETATM 22 C C22 CLR . . . L 6 105.694 109.693 136.645 1 54.82 ? C22 CLR 704 A 1 HETATM 23 C C23 CLR . . . L 6 104.894 110.553 135.661 1 54.82 ? C23 CLR 704 A 1 HETATM 24 C C24 CLR . . . L 6 105.911 110.816 134.489 1 54.82 ? C24 CLR 704 A 1 HETATM 25 C C25 CLR . . . L 6 105.186 111.345 133.231 1 54.82 ? C25 CLR 704 A 1 HETATM 26 C C26 CLR . . . L 6 104.207 112.457 133.691 1 54.82 ? C26 CLR 704 A 1 HETATM 27 C C27 CLR . . . L 6 106.147 111.826 132.124 1 54.82 ? C27 CLR 704 A 1 HETATM 28 O O1 CLR . . . L 6 103.85 102.532 146.756 1 54.82 ? O1 CLR 704 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 52 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 28 #