data_8QCN # _model_server_result.job_id besVraNQm9a_es14oNZOkA _model_server_result.datetime_utc '2024-11-28 21:32:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qcn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 8QCN # _exptl.entry_id 8QCN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 127.39 _cell.angle_gamma 90 _cell.entry_id 8QCN _cell.length_a 143.928 _cell.length_b 53.113 _cell.length_c 91.717 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QCN _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 8QCN _atom_sites.fract_transf_matrix[1][1] 0.006948 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00531 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018828 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013723 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 301 302 ADP ADP . D 3 QB9 A 1 302 303 QB9 LIG . E 2 ADP B 1 301 302 ADP ADP . F 3 QB9 B 1 302 303 QB9 LIG . G 4 HOH A 1 401 56 HOH HOH . G 4 HOH A 2 402 40 HOH HOH . G 4 HOH A 3 403 88 HOH HOH . G 4 HOH A 4 404 87 HOH HOH . G 4 HOH A 5 405 9 HOH HOH . G 4 HOH A 6 406 80 HOH HOH . G 4 HOH A 7 407 38 HOH HOH . G 4 HOH A 8 408 71 HOH HOH . G 4 HOH A 9 409 31 HOH HOH . G 4 HOH A 10 410 19 HOH HOH . G 4 HOH A 11 411 95 HOH HOH . G 4 HOH A 12 412 28 HOH HOH . G 4 HOH A 13 413 35 HOH HOH . G 4 HOH A 14 414 74 HOH HOH . G 4 HOH A 15 415 67 HOH HOH . G 4 HOH A 16 416 39 HOH HOH . G 4 HOH A 17 417 22 HOH HOH . G 4 HOH A 18 418 112 HOH HOH . G 4 HOH A 19 419 54 HOH HOH . G 4 HOH A 20 420 33 HOH HOH . G 4 HOH A 21 421 62 HOH HOH . G 4 HOH A 22 422 53 HOH HOH . G 4 HOH A 23 423 32 HOH HOH . G 4 HOH A 24 424 73 HOH HOH . G 4 HOH A 25 425 110 HOH HOH . G 4 HOH A 26 426 2 HOH HOH . G 4 HOH A 27 427 8 HOH HOH . G 4 HOH A 28 428 66 HOH HOH . G 4 HOH A 29 429 57 HOH HOH . G 4 HOH A 30 430 45 HOH HOH . G 4 HOH A 31 431 10 HOH HOH . G 4 HOH A 32 432 111 HOH HOH . G 4 HOH A 33 433 12 HOH HOH . G 4 HOH A 34 434 94 HOH HOH . G 4 HOH A 35 435 64 HOH HOH . G 4 HOH A 36 436 104 HOH HOH . G 4 HOH A 37 437 98 HOH HOH . G 4 HOH A 38 438 60 HOH HOH . G 4 HOH A 39 439 13 HOH HOH . G 4 HOH A 40 440 90 HOH HOH . G 4 HOH A 41 441 44 HOH HOH . G 4 HOH A 42 442 77 HOH HOH . G 4 HOH A 43 443 69 HOH HOH . G 4 HOH A 44 444 15 HOH HOH . G 4 HOH A 45 445 97 HOH HOH . G 4 HOH A 46 446 103 HOH HOH . G 4 HOH A 47 447 46 HOH HOH . G 4 HOH A 48 448 84 HOH HOH . H 4 HOH B 1 401 78 HOH HOH . H 4 HOH B 2 402 51 HOH HOH . H 4 HOH B 3 403 61 HOH HOH . H 4 HOH B 4 404 29 HOH HOH . H 4 HOH B 5 405 107 HOH HOH . H 4 HOH B 6 406 101 HOH HOH . H 4 HOH B 7 407 25 HOH HOH . H 4 HOH B 8 408 59 HOH HOH . H 4 HOH B 9 409 48 HOH HOH . H 4 HOH B 10 410 52 HOH HOH . H 4 HOH B 11 411 41 HOH HOH . H 4 HOH B 12 412 50 HOH HOH . H 4 HOH B 13 413 49 HOH HOH . H 4 HOH B 14 414 21 HOH HOH . H 4 HOH B 15 415 30 HOH HOH . H 4 HOH B 16 416 47 HOH HOH . H 4 HOH B 17 417 113 HOH HOH . H 4 HOH B 18 418 36 HOH HOH . H 4 HOH B 19 419 5 HOH HOH . H 4 HOH B 20 420 26 HOH HOH . H 4 HOH B 21 421 65 HOH HOH . H 4 HOH B 22 422 79 HOH HOH . H 4 HOH B 23 423 20 HOH HOH . H 4 HOH B 24 424 43 HOH HOH . H 4 HOH B 25 425 108 HOH HOH . H 4 HOH B 26 426 70 HOH HOH . H 4 HOH B 27 427 23 HOH HOH . H 4 HOH B 28 428 105 HOH HOH . H 4 HOH B 29 429 18 HOH HOH . H 4 HOH B 30 430 6 HOH HOH . H 4 HOH B 31 431 102 HOH HOH . H 4 HOH B 32 432 24 HOH HOH . H 4 HOH B 33 433 63 HOH HOH . H 4 HOH B 34 434 27 HOH HOH . H 4 HOH B 35 435 7 HOH HOH . H 4 HOH B 36 436 34 HOH HOH . H 4 HOH B 37 437 91 HOH HOH . H 4 HOH B 38 438 55 HOH HOH . H 4 HOH B 39 439 14 HOH HOH . H 4 HOH B 40 440 89 HOH HOH . H 4 HOH B 41 441 100 HOH HOH . H 4 HOH B 42 442 92 HOH HOH . H 4 HOH B 43 443 96 HOH HOH . H 4 HOH B 44 444 85 HOH HOH . H 4 HOH B 45 445 86 HOH HOH . H 4 HOH B 46 446 99 HOH HOH . H 4 HOH B 47 447 93 HOH HOH . H 4 HOH B 48 448 16 HOH HOH . H 4 HOH B 49 449 109 HOH HOH . H 4 HOH B 50 450 81 HOH HOH . H 4 HOH B 51 451 72 HOH HOH . H 4 HOH B 52 452 11 HOH HOH . H 4 HOH B 53 453 75 HOH HOH . H 4 HOH B 54 454 106 HOH HOH . H 4 HOH B 55 455 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . C 2 9.109 0.085 25.182 1 65.13 ? PB ADP 301 A 1 HETATM 2 O O1B ADP . . . C 2 8.364 1.243 25.806 1 64.72 ? O1B ADP 301 A 1 HETATM 3 O O2B ADP . . . C 2 8.473 -1.261 25.444 1 83.02 -1 O2B ADP 301 A 1 HETATM 4 O O3B ADP . . . C 2 9.548 0.3 23.754 1 65.34 ? O3B ADP 301 A 1 HETATM 5 P PA ADP . . . C 2 10.995 -1.25 26.817 1 65.25 ? PA ADP 301 A 1 HETATM 6 O O1A ADP . . . C 2 10.348 -2.476 26.212 1 65.49 -1 O1A ADP 301 A 1 HETATM 7 O O2A ADP . . . C 2 12.504 -1.175 26.895 1 57.14 ? O2A ADP 301 A 1 HETATM 8 O O3A ADP . . . C 2 10.504 0.046 25.991 1 79.17 ? O3A ADP 301 A 1 HETATM 9 O O5' ADP . . . C 2 10.362 -0.983 28.279 1 68.28 ? O5' ADP 301 A 1 HETATM 10 C C5' ADP . . . C 2 11.188 -0.799 29.438 1 71.39 ? C5' ADP 301 A 1 HETATM 11 C C4' ADP . . . C 2 10.519 -1.48 30.631 1 65.74 ? C4' ADP 301 A 1 HETATM 12 O O4' ADP . . . C 2 10.709 -2.906 30.461 1 70.46 ? O4' ADP 301 A 1 HETATM 13 C C3' ADP . . . C 2 10.996 -1.131 32.043 1 61.59 ? C3' ADP 301 A 1 HETATM 14 O O3' ADP . . . C 2 9.84 -0.866 32.848 1 58.02 ? O3' ADP 301 A 1 HETATM 15 C C2' ADP . . . C 2 11.723 -2.356 32.576 1 67.49 ? C2' ADP 301 A 1 HETATM 16 O O2' ADP . . . C 2 11.334 -2.711 33.906 1 78.12 ? O2' ADP 301 A 1 HETATM 17 C C1' ADP . . . C 2 11.363 -3.496 31.606 1 53.04 ? C1' ADP 301 A 1 HETATM 18 N N9 ADP . . . C 2 12.554 -4.304 31.248 1 51.72 ? N9 ADP 301 A 1 HETATM 19 C C8 ADP . . . C 2 12.816 -5.537 31.727 1 39.42 ? C8 ADP 301 A 1 HETATM 20 N N7 ADP . . . C 2 13.984 -6 31.217 1 43.96 ? N7 ADP 301 A 1 HETATM 21 C C5 ADP . . . C 2 14.476 -5.052 30.398 1 45.6 ? C5 ADP 301 A 1 HETATM 22 C C6 ADP . . . C 2 15.67 -4.896 29.54 1 44.11 ? C6 ADP 301 A 1 HETATM 23 N N6 ADP . . . C 2 16.592 -5.879 29.46 1 45.97 ? N6 ADP 301 A 1 HETATM 24 N N1 ADP . . . C 2 15.811 -3.747 28.847 1 42.23 ? N1 ADP 301 A 1 HETATM 25 C C2 ADP . . . C 2 14.901 -2.76 28.914 1 51.07 ? C2 ADP 301 A 1 HETATM 26 N N3 ADP . . . C 2 13.796 -2.844 29.675 1 47.79 ? N3 ADP 301 A 1 HETATM 27 C C4 ADP . . . C 2 13.53 -3.935 30.423 1 50.99 ? C4 ADP 301 A 1 HETATM 28 H "H5'1" ADP . . . C 2 11.318 0.267 29.639 1 87.02 ? "H5'1" ADP 301 A 1 HETATM 29 H "H5'2" ADP . . . C 2 12.176 -1.231 29.265 1 87.02 ? "H5'2" ADP 301 A 1 HETATM 30 H H4' ADP . . . C 2 9.482 -1.119 30.602 1 80.24 ? H4' ADP 301 A 1 HETATM 31 H H3' ADP . . . C 2 11.654 -0.251 32.058 1 75.27 ? H3' ADP 301 A 1 HETATM 32 H HO3' ADP . . . C 2 10.088 -0.88 33.782 1 70.98 ? HO3' ADP 301 A 1 HETATM 33 H H2' ADP . . . C 2 12.802 -2.157 32.637 1 82.34 ? H2' ADP 301 A 1 HETATM 34 H HO2' ADP . . . C 2 12.053 -2.505 34.518 1 95.1 ? HO2' ADP 301 A 1 HETATM 35 H H1' ADP . . . C 2 10.674 -4.199 32.096 1 65 ? H1' ADP 301 A 1 HETATM 36 H H8 ADP . . . C 2 12.184 -6.08 32.419 1 48.66 ? H8 ADP 301 A 1 HETATM 37 H HN61 ADP . . . C 2 16.462 -6.722 29.987 1 56.51 ? HN61 ADP 301 A 1 HETATM 38 H HN62 ADP . . . C 2 17.408 -5.771 28.879 1 56.51 ? HN62 ADP 301 A 1 HETATM 39 H H2 ADP . . . C 2 15.064 -1.862 28.332 1 62.64 ? H2 ADP 301 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 39 #