data_8QCN # _model_server_result.job_id l2YFLVhsMUcUsAW4TDNe_g _model_server_result.datetime_utc '2024-11-07 21:48:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qcn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 8QCN # _exptl.entry_id 8QCN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 127.39 _cell.angle_gamma 90 _cell.entry_id 8QCN _cell.length_a 143.928 _cell.length_b 53.113 _cell.length_c 91.717 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QCN _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 8QCN _atom_sites.fract_transf_matrix[1][1] 0.006948 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00531 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018828 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013723 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 301 302 ADP ADP . D 3 QB9 A 1 302 303 QB9 LIG . E 2 ADP B 1 301 302 ADP ADP . F 3 QB9 B 1 302 303 QB9 LIG . G 4 HOH A 1 401 56 HOH HOH . G 4 HOH A 2 402 40 HOH HOH . G 4 HOH A 3 403 88 HOH HOH . G 4 HOH A 4 404 87 HOH HOH . G 4 HOH A 5 405 9 HOH HOH . G 4 HOH A 6 406 80 HOH HOH . G 4 HOH A 7 407 38 HOH HOH . G 4 HOH A 8 408 71 HOH HOH . G 4 HOH A 9 409 31 HOH HOH . G 4 HOH A 10 410 19 HOH HOH . G 4 HOH A 11 411 95 HOH HOH . G 4 HOH A 12 412 28 HOH HOH . G 4 HOH A 13 413 35 HOH HOH . G 4 HOH A 14 414 74 HOH HOH . G 4 HOH A 15 415 67 HOH HOH . G 4 HOH A 16 416 39 HOH HOH . G 4 HOH A 17 417 22 HOH HOH . G 4 HOH A 18 418 112 HOH HOH . G 4 HOH A 19 419 54 HOH HOH . G 4 HOH A 20 420 33 HOH HOH . G 4 HOH A 21 421 62 HOH HOH . G 4 HOH A 22 422 53 HOH HOH . G 4 HOH A 23 423 32 HOH HOH . G 4 HOH A 24 424 73 HOH HOH . G 4 HOH A 25 425 110 HOH HOH . G 4 HOH A 26 426 2 HOH HOH . G 4 HOH A 27 427 8 HOH HOH . G 4 HOH A 28 428 66 HOH HOH . G 4 HOH A 29 429 57 HOH HOH . G 4 HOH A 30 430 45 HOH HOH . G 4 HOH A 31 431 10 HOH HOH . G 4 HOH A 32 432 111 HOH HOH . G 4 HOH A 33 433 12 HOH HOH . G 4 HOH A 34 434 94 HOH HOH . G 4 HOH A 35 435 64 HOH HOH . G 4 HOH A 36 436 104 HOH HOH . G 4 HOH A 37 437 98 HOH HOH . G 4 HOH A 38 438 60 HOH HOH . G 4 HOH A 39 439 13 HOH HOH . G 4 HOH A 40 440 90 HOH HOH . G 4 HOH A 41 441 44 HOH HOH . G 4 HOH A 42 442 77 HOH HOH . G 4 HOH A 43 443 69 HOH HOH . G 4 HOH A 44 444 15 HOH HOH . G 4 HOH A 45 445 97 HOH HOH . G 4 HOH A 46 446 103 HOH HOH . G 4 HOH A 47 447 46 HOH HOH . G 4 HOH A 48 448 84 HOH HOH . H 4 HOH B 1 401 78 HOH HOH . H 4 HOH B 2 402 51 HOH HOH . H 4 HOH B 3 403 61 HOH HOH . H 4 HOH B 4 404 29 HOH HOH . H 4 HOH B 5 405 107 HOH HOH . H 4 HOH B 6 406 101 HOH HOH . H 4 HOH B 7 407 25 HOH HOH . H 4 HOH B 8 408 59 HOH HOH . H 4 HOH B 9 409 48 HOH HOH . H 4 HOH B 10 410 52 HOH HOH . H 4 HOH B 11 411 41 HOH HOH . H 4 HOH B 12 412 50 HOH HOH . H 4 HOH B 13 413 49 HOH HOH . H 4 HOH B 14 414 21 HOH HOH . H 4 HOH B 15 415 30 HOH HOH . H 4 HOH B 16 416 47 HOH HOH . H 4 HOH B 17 417 113 HOH HOH . H 4 HOH B 18 418 36 HOH HOH . H 4 HOH B 19 419 5 HOH HOH . H 4 HOH B 20 420 26 HOH HOH . H 4 HOH B 21 421 65 HOH HOH . H 4 HOH B 22 422 79 HOH HOH . H 4 HOH B 23 423 20 HOH HOH . H 4 HOH B 24 424 43 HOH HOH . H 4 HOH B 25 425 108 HOH HOH . H 4 HOH B 26 426 70 HOH HOH . H 4 HOH B 27 427 23 HOH HOH . H 4 HOH B 28 428 105 HOH HOH . H 4 HOH B 29 429 18 HOH HOH . H 4 HOH B 30 430 6 HOH HOH . H 4 HOH B 31 431 102 HOH HOH . H 4 HOH B 32 432 24 HOH HOH . H 4 HOH B 33 433 63 HOH HOH . H 4 HOH B 34 434 27 HOH HOH . H 4 HOH B 35 435 7 HOH HOH . H 4 HOH B 36 436 34 HOH HOH . H 4 HOH B 37 437 91 HOH HOH . H 4 HOH B 38 438 55 HOH HOH . H 4 HOH B 39 439 14 HOH HOH . H 4 HOH B 40 440 89 HOH HOH . H 4 HOH B 41 441 100 HOH HOH . H 4 HOH B 42 442 92 HOH HOH . H 4 HOH B 43 443 96 HOH HOH . H 4 HOH B 44 444 85 HOH HOH . H 4 HOH B 45 445 86 HOH HOH . H 4 HOH B 46 446 99 HOH HOH . H 4 HOH B 47 447 93 HOH HOH . H 4 HOH B 48 448 16 HOH HOH . H 4 HOH B 49 449 109 HOH HOH . H 4 HOH B 50 450 81 HOH HOH . H 4 HOH B 51 451 72 HOH HOH . H 4 HOH B 52 452 11 HOH HOH . H 4 HOH B 53 453 75 HOH HOH . H 4 HOH B 54 454 106 HOH HOH . H 4 HOH B 55 455 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . E 2 50.677 1.862 18.897 1 50.79 ? PB ADP 301 B 1 HETATM 2 O O1B ADP . . . E 2 51.527 3.02 19.361 1 68.93 ? O1B ADP 301 B 1 HETATM 3 O O2B ADP . . . E 2 49.977 2.098 17.58 1 51.39 -1 O2B ADP 301 B 1 HETATM 4 O O3B ADP . . . E 2 51.355 0.516 19.016 1 45.19 ? O3B ADP 301 B 1 HETATM 5 P PA ADP . . . E 2 48.798 3.06 20.662 1 52 ? PA ADP 301 B 1 HETATM 6 O O1A ADP . . . E 2 47.323 2.775 20.809 1 41.32 -1 O1A ADP 301 B 1 HETATM 7 O O2A ADP . . . E 2 49.253 4.305 19.933 1 55.76 ? O2A ADP 301 B 1 HETATM 8 O O3A ADP . . . E 2 49.471 1.766 19.965 1 58.04 ? O3A ADP 301 B 1 HETATM 9 O O5' ADP . . . E 2 49.394 3.071 22.154 1 56.87 ? O5' ADP 301 B 1 HETATM 10 C C5' ADP . . . E 2 50.791 3.106 22.357 1 50.59 ? C5' ADP 301 B 1 HETATM 11 C C4' ADP . . . E 2 51.089 3.462 23.814 1 48.17 ? C4' ADP 301 B 1 HETATM 12 O O4' ADP . . . E 2 50.624 4.784 24.192 1 45.46 ? O4' ADP 301 B 1 HETATM 13 C C3' ADP . . . E 2 50.54 2.486 24.867 1 52.74 ? C3' ADP 301 B 1 HETATM 14 O O3' ADP . . . E 2 51.627 1.703 25.376 1 83.49 ? O3' ADP 301 B 1 HETATM 15 C C2' ADP . . . E 2 49.893 3.344 25.953 1 53.31 ? C2' ADP 301 B 1 HETATM 16 O O2' ADP . . . E 2 50.613 3.167 27.177 1 57.21 ? O2' ADP 301 B 1 HETATM 17 C C1' ADP . . . E 2 50.034 4.806 25.511 1 55.86 ? C1' ADP 301 B 1 HETATM 18 N N9 ADP . . . E 2 48.803 5.635 25.513 1 41.71 ? N9 ADP 301 B 1 HETATM 19 C C8 ADP . . . E 2 48.761 6.889 26.006 1 36.33 ? C8 ADP 301 B 1 HETATM 20 N N7 ADP . . . E 2 47.514 7.402 25.894 1 38.1 ? N7 ADP 301 B 1 HETATM 21 C C5 ADP . . . E 2 46.746 6.46 25.321 1 36.06 ? C5 ADP 301 B 1 HETATM 22 C C6 ADP . . . E 2 45.33 6.348 24.915 1 45.4 ? C6 ADP 301 B 1 HETATM 23 N N6 ADP . . . E 2 44.471 7.377 25.109 1 30.79 ? N6 ADP 301 B 1 HETATM 24 N N1 ADP . . . E 2 44.932 5.186 24.348 1 58.55 ? N1 ADP 301 B 1 HETATM 25 C C2 ADP . . . E 2 45.775 4.153 24.149 1 41.93 ? C2 ADP 301 B 1 HETATM 26 N N3 ADP . . . E 2 47.074 4.191 24.494 1 42.29 ? N3 ADP 301 B 1 HETATM 27 C C4 ADP . . . E 2 47.601 5.293 25.074 1 45.15 ? C4 ADP 301 B 1 HETATM 28 H "H5'1" ADP . . . E 2 51.243 3.847 21.694 1 62.06 ? "H5'1" ADP 301 B 1 HETATM 29 H "H5'2" ADP . . . E 2 51.224 2.133 22.117 1 62.06 ? "H5'2" ADP 301 B 1 HETATM 30 H H4' ADP . . . E 2 52.187 3.414 23.825 1 59.16 ? H4' ADP 301 B 1 HETATM 31 H H3' ADP . . . E 2 49.799 1.784 24.46 1 64.64 ? H3' ADP 301 B 1 HETATM 32 H HO3' ADP . . . E 2 51.468 0.768 25.185 1 101.54 ? HO3' ADP 301 B 1 HETATM 33 H H2' ADP . . . E 2 48.841 3.067 26.106 1 65.33 ? H2' ADP 301 B 1 HETATM 34 H HO2' ADP . . . E 2 50.547 2.244 27.459 1 70.01 ? HO2' ADP 301 B 1 HETATM 35 H H1' ADP . . . E 2 50.657 5.289 26.277 1 68.38 ? H1' ADP 301 B 1 HETATM 36 H H8 ADP . . . E 2 49.608 7.413 26.432 1 44.95 ? H8 ADP 301 B 1 HETATM 37 H HN61 ADP . . . E 2 44.798 8.231 25.534 1 38.3 ? HN61 ADP 301 B 1 HETATM 38 H HN62 ADP . . . E 2 43.504 7.292 24.832 1 38.3 ? HN62 ADP 301 B 1 HETATM 39 H H2 ADP . . . E 2 45.388 3.251 23.692 1 51.67 ? H2 ADP 301 B 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 39 #