data_8QCN # _model_server_result.job_id EvPFNkDa2KMR1haS7R1UsA _model_server_result.datetime_utc '2024-11-07 21:47:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qcn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 8QCN # _exptl.entry_id 8QCN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 268.292 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[3-(4-azanyl-2-oxidanylidene-1~{H}-pyrimidin-5-yl)prop-2-ynyl]cyclopropanesulfonamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 127.39 _cell.angle_gamma 90 _cell.entry_id 8QCN _cell.length_a 143.928 _cell.length_b 53.113 _cell.length_c 91.717 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QCN _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C10 H12 N4 O3 S' _chem_comp.formula_weight 268.292 _chem_comp.id QB9 _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[3-(4-azanyl-2-oxidanylidene-1~{H}-pyrimidin-5-yl)prop-2-ynyl]cyclopropanesulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms N-(3-(4-amino-2-oxo-1,2-dihydropyrimidin-5-yl)prop-2-yn-1-yl)cyclopropanesulfonamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C02 N01 QB9 sing 321 n n N03 C02 QB9 doub 322 n n C04 N03 QB9 sing 323 n n O05 C04 QB9 doub 324 n n N06 C04 QB9 sing 325 n n C07 N06 QB9 sing 326 n n C08 C07 QB9 doub 327 n n C09 C08 QB9 sing 328 n n C10 C09 QB9 trip 329 n n C11 C10 QB9 sing 330 n n N12 C11 QB9 sing 331 n n S13 N12 QB9 sing 332 n n O14 S13 QB9 doub 333 n n O15 S13 QB9 doub 334 n n C16 S13 QB9 sing 335 n n C17 C16 QB9 sing 336 n n C18 C17 QB9 sing 337 n n C02 C08 QB9 sing 338 n n C16 C18 QB9 sing 339 n n N12 H121 QB9 sing 340 n n C17 H172 QB9 sing 341 n n C17 H171 QB9 sing 342 n n C07 H071 QB9 sing 343 n n C11 H112 QB9 sing 344 n n C11 H111 QB9 sing 345 n n C16 H161 QB9 sing 346 n n C18 H181 QB9 sing 347 n n C18 H182 QB9 sing 348 n n N01 H011 QB9 sing 349 n n N01 H012 QB9 sing 350 n n N06 H061 QB9 sing 351 n n # _atom_sites.entry_id 8QCN _atom_sites.fract_transf_matrix[1][1] 0.006948 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00531 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018828 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013723 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 301 302 ADP ADP . D 3 QB9 A 1 302 303 QB9 LIG . E 2 ADP B 1 301 302 ADP ADP . F 3 QB9 B 1 302 303 QB9 LIG . G 4 HOH A 1 401 56 HOH HOH . G 4 HOH A 2 402 40 HOH HOH . G 4 HOH A 3 403 88 HOH HOH . G 4 HOH A 4 404 87 HOH HOH . G 4 HOH A 5 405 9 HOH HOH . G 4 HOH A 6 406 80 HOH HOH . G 4 HOH A 7 407 38 HOH HOH . G 4 HOH A 8 408 71 HOH HOH . G 4 HOH A 9 409 31 HOH HOH . G 4 HOH A 10 410 19 HOH HOH . G 4 HOH A 11 411 95 HOH HOH . G 4 HOH A 12 412 28 HOH HOH . G 4 HOH A 13 413 35 HOH HOH . G 4 HOH A 14 414 74 HOH HOH . G 4 HOH A 15 415 67 HOH HOH . G 4 HOH A 16 416 39 HOH HOH . G 4 HOH A 17 417 22 HOH HOH . G 4 HOH A 18 418 112 HOH HOH . G 4 HOH A 19 419 54 HOH HOH . G 4 HOH A 20 420 33 HOH HOH . G 4 HOH A 21 421 62 HOH HOH . G 4 HOH A 22 422 53 HOH HOH . G 4 HOH A 23 423 32 HOH HOH . G 4 HOH A 24 424 73 HOH HOH . G 4 HOH A 25 425 110 HOH HOH . G 4 HOH A 26 426 2 HOH HOH . G 4 HOH A 27 427 8 HOH HOH . G 4 HOH A 28 428 66 HOH HOH . G 4 HOH A 29 429 57 HOH HOH . G 4 HOH A 30 430 45 HOH HOH . G 4 HOH A 31 431 10 HOH HOH . G 4 HOH A 32 432 111 HOH HOH . G 4 HOH A 33 433 12 HOH HOH . G 4 HOH A 34 434 94 HOH HOH . G 4 HOH A 35 435 64 HOH HOH . G 4 HOH A 36 436 104 HOH HOH . G 4 HOH A 37 437 98 HOH HOH . G 4 HOH A 38 438 60 HOH HOH . G 4 HOH A 39 439 13 HOH HOH . G 4 HOH A 40 440 90 HOH HOH . G 4 HOH A 41 441 44 HOH HOH . G 4 HOH A 42 442 77 HOH HOH . G 4 HOH A 43 443 69 HOH HOH . G 4 HOH A 44 444 15 HOH HOH . G 4 HOH A 45 445 97 HOH HOH . G 4 HOH A 46 446 103 HOH HOH . G 4 HOH A 47 447 46 HOH HOH . G 4 HOH A 48 448 84 HOH HOH . H 4 HOH B 1 401 78 HOH HOH . H 4 HOH B 2 402 51 HOH HOH . H 4 HOH B 3 403 61 HOH HOH . H 4 HOH B 4 404 29 HOH HOH . H 4 HOH B 5 405 107 HOH HOH . H 4 HOH B 6 406 101 HOH HOH . H 4 HOH B 7 407 25 HOH HOH . H 4 HOH B 8 408 59 HOH HOH . H 4 HOH B 9 409 48 HOH HOH . H 4 HOH B 10 410 52 HOH HOH . H 4 HOH B 11 411 41 HOH HOH . H 4 HOH B 12 412 50 HOH HOH . H 4 HOH B 13 413 49 HOH HOH . H 4 HOH B 14 414 21 HOH HOH . H 4 HOH B 15 415 30 HOH HOH . H 4 HOH B 16 416 47 HOH HOH . H 4 HOH B 17 417 113 HOH HOH . H 4 HOH B 18 418 36 HOH HOH . H 4 HOH B 19 419 5 HOH HOH . H 4 HOH B 20 420 26 HOH HOH . H 4 HOH B 21 421 65 HOH HOH . H 4 HOH B 22 422 79 HOH HOH . H 4 HOH B 23 423 20 HOH HOH . H 4 HOH B 24 424 43 HOH HOH . H 4 HOH B 25 425 108 HOH HOH . H 4 HOH B 26 426 70 HOH HOH . H 4 HOH B 27 427 23 HOH HOH . H 4 HOH B 28 428 105 HOH HOH . H 4 HOH B 29 429 18 HOH HOH . H 4 HOH B 30 430 6 HOH HOH . H 4 HOH B 31 431 102 HOH HOH . H 4 HOH B 32 432 24 HOH HOH . H 4 HOH B 33 433 63 HOH HOH . H 4 HOH B 34 434 27 HOH HOH . H 4 HOH B 35 435 7 HOH HOH . H 4 HOH B 36 436 34 HOH HOH . H 4 HOH B 37 437 91 HOH HOH . H 4 HOH B 38 438 55 HOH HOH . H 4 HOH B 39 439 14 HOH HOH . H 4 HOH B 40 440 89 HOH HOH . H 4 HOH B 41 441 100 HOH HOH . H 4 HOH B 42 442 92 HOH HOH . H 4 HOH B 43 443 96 HOH HOH . H 4 HOH B 44 444 85 HOH HOH . H 4 HOH B 45 445 86 HOH HOH . H 4 HOH B 46 446 99 HOH HOH . H 4 HOH B 47 447 93 HOH HOH . H 4 HOH B 48 448 16 HOH HOH . H 4 HOH B 49 449 109 HOH HOH . H 4 HOH B 50 450 81 HOH HOH . H 4 HOH B 51 451 72 HOH HOH . H 4 HOH B 52 452 11 HOH HOH . H 4 HOH B 53 453 75 HOH HOH . H 4 HOH B 54 454 106 HOH HOH . H 4 HOH B 55 455 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 QB9 . . . D 3 1.057 -4.265 22.134 1 51.38 ? C10 QB9 302 A 1 HETATM 2 N N12 QB9 . . . D 3 3.094 -3.853 20.771 1 63.85 ? N12 QB9 302 A 1 HETATM 3 C C17 QB9 . . . D 3 2.272 -1.109 22.557 1 68.63 ? C17 QB9 302 A 1 HETATM 4 C C02 QB9 . . . D 3 -2.013 -3.719 23.912 1 42.89 ? C02 QB9 302 A 1 HETATM 5 C C04 QB9 . . . D 3 -2.497 -2.893 26.017 1 50.08 ? C04 QB9 302 A 1 HETATM 6 C C07 QB9 . . . D 3 -0.262 -3.033 25.367 1 45.02 ? C07 QB9 302 A 1 HETATM 7 C C08 QB9 . . . D 3 -0.658 -3.549 24.143 1 46.13 ? C08 QB9 302 A 1 HETATM 8 C C09 QB9 . . . D 3 0.336 -3.936 23.034 1 47.92 ? C09 QB9 302 A 1 HETATM 9 C C11 QB9 . . . D 3 1.947 -4.747 20.973 1 57.2 ? C11 QB9 302 A 1 HETATM 10 C C16 QB9 . . . D 3 1.814 -1.265 21.104 1 58.86 ? C16 QB9 302 A 1 HETATM 11 C C18 QB9 . . . D 3 2.389 0.068 21.584 1 52.3 ? C18 QB9 302 A 1 HETATM 12 N N01 QB9 . . . D 3 -2.452 -4.265 22.633 1 49.99 ? N01 QB9 302 A 1 HETATM 13 N N03 QB9 . . . D 3 -2.896 -3.388 24.846 1 44.58 ? N03 QB9 302 A 1 HETATM 14 N N06 QB9 . . . D 3 -1.191 -2.72 26.268 1 51.51 ? N06 QB9 302 A 1 HETATM 15 O O05 QB9 . . . D 3 -3.308 -2.608 26.836 1 53.19 ? O05 QB9 302 A 1 HETATM 16 O O14 QB9 . . . D 3 4.204 -1.659 19.809 1 48.21 ? O14 QB9 302 A 1 HETATM 17 O O15 QB9 . . . D 3 2.372 -2.403 18.687 1 65.71 ? O15 QB9 302 A 1 HETATM 18 S S13 QB9 . . . D 3 2.901 -2.298 20.052 1 54.8 ? S13 QB9 302 A 1 HETATM 19 H H121 QB9 . . . D 3 4.009 -4.154 21.058 1 77.97 ? H121 QB9 302 A 1 HETATM 20 H H172 QB9 . . . D 3 3.207 -1.603 22.811 1 83.71 ? H172 QB9 302 A 1 HETATM 21 H H171 QB9 . . . D 3 1.477 -1.031 23.294 1 83.71 ? H171 QB9 302 A 1 HETATM 22 H H071 QB9 . . . D 3 0.793 -2.885 25.588 1 55.37 ? H071 QB9 302 A 1 HETATM 23 H H112 QB9 . . . D 3 1.356 -4.776 20.061 1 69.99 ? H112 QB9 302 A 1 HETATM 24 H H111 QB9 . . . D 3 2.313 -5.747 21.197 1 69.99 ? H111 QB9 302 A 1 HETATM 25 H H161 QB9 . . . D 3 0.739 -1.261 20.937 1 71.99 ? H161 QB9 302 A 1 HETATM 26 H H181 QB9 . . . D 3 3.397 0.296 21.242 1 64.11 ? H181 QB9 302 A 1 HETATM 27 H H182 QB9 . . . D 3 1.665 0.868 21.726 1 64.11 ? H182 QB9 302 A 1 HETATM 28 H H011 QB9 . . . D 3 -2.991 -3.702 22.003 1 61.34 ? H011 QB9 302 A 1 HETATM 29 H H012 QB9 . . . D 3 -2.205 -5.209 22.381 1 61.34 ? H012 QB9 302 A 1 HETATM 30 H H061 QB9 . . . D 3 -0.907 -2.346 27.158 1 63.16 ? H061 QB9 302 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 38 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #