data_8QCU
#
_model_server_result.job_id            TKIkXHTQSPV431ScndxPGA 
_model_server_result.datetime_utc      '2024-12-01 15:07:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8qcu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":208}' 
#
_entry.id    8QCU 
#
_exptl.entry_id    8QCU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              404.376 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'Tricarbonyl di(imidazole) rhenium(I)' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8QCU 
_cell.length_a            81.12 
_cell.length_b            81.12 
_cell.length_c            37.19 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8QCU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    'P 4nw 2abw' 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
metalc ? metalc1 A NE2 HIS 15 A HIS 15 1_555 H RE REI . A REI 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? 
metalc ? metalc2 A OD2 ASP 18 A ASP 18 1_555 K RE RE . A RE 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? 
metalc ? metalc3 A O SER 60 A SER 60 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? 
metalc ? metalc4 A O CYS 64 A CYS 64 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? 
metalc ? metalc5 A OG SER 72 A SER 72 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
metalc ? metalc6 A O ARG 73 A ARG 73 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? 
metalc ? metalc7 A OD2 ASP 101 A ASP 101 1_555 G RE VHL . A VHL 206 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.233 ? 
metalc ? metalc8 A OD2 ASP 101 A ASP 101 1_555 G RE VHL . A VHL 206 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.215 ? 
metalc ? metalc9 A OD2 ASP 119 A ASP 119 1_555 I RE VHL . A VHL 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? 
metalc ? metalc10 F NA NA . A NA 205 1_555 S O HOH . A HOH 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? 
metalc ? metalc11 F NA NA . A NA 205 1_555 S O HOH . A HOH 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
metalc ? metalc12 I N2 VHL . A VHL 208 1_555 O RE RE . A RE 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.773 ? 
metalc ? metalc13 O RE RE . A RE 214 1_555 S O HOH . A HOH 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? 
#
_chem_comp.formula           'C9 H6 N4 O3 Re 1' 
_chem_comp.formula_weight    404.376 
_chem_comp.id                VHL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'Tricarbonyl di(imidazole) rhenium(I)' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     di(imidazol-1-yl)-tris(oxidaniumylidynemethyl)rhenium(1+) 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
RE N1 VHL sing 405 n n 
RE N3 VHL sing 406 n n 
C1 O1 VHL trip 407 n n 
C2 O2 VHL trip 408 n n 
C3 O3 VHL trip 409 n n 
N1 C4 VHL sing 410 n y 
N1 C6 VHL sing 411 n y 
C4 N2 VHL doub 412 n y 
N2 C5 VHL sing 413 n y 
C5 C6 VHL doub 414 n y 
N3 C7 VHL sing 415 n y 
N3 C9 VHL sing 416 n y 
C7 N4 VHL doub 417 n y 
N4 C8 VHL sing 418 n y 
C8 C9 VHL doub 419 n y 
C6 H61 VHL sing 420 n n 
C5 H51 VHL sing 421 n n 
C4 H41 VHL sing 422 n n 
C7 H71 VHL sing 423 n n 
C9 H91 VHL sing 424 n n 
C8 H81 VHL sing 425 n n 
RE C1 VHL sing 426 n n 
RE C2 VHL sing 427 n n 
RE C3 VHL sing 428 n n 
#
_atom_sites.entry_id                     8QCU 
_atom_sites.fract_transf_matrix[1][1]    0.012327 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012327 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026889 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CL A 1 201 1131 CL CL . 
C 2 CL A 1 202 1132 CL CL . 
D 2 CL A 1 203 1135 CL CL . 
E 2 CL A 1 204 1137 CL CL . 
F 3 NA A 1 205 1138 NA NA . 
G 4 VHL A 1 206 2142 VHL RII . 
H 5 REI A 1 207 2143 REI RI3 . 
I 4 VHL A 1 208 2144 VHL RII . 
J 6 IMD A 1 209 2145 IMD IMD . 
K 7 RE A 1 210 5 RE RE . 
L 7 RE A 1 211 6 RE RE . 
M 7 RE A 1 212 7 RE RE . 
N 7 RE A 1 213 9 RE RE . 
O 7 RE A 1 214 10 RE RE . 
P 7 RE A 1 215 11 RE RE . 
Q 2 CL A 1 216 1 CL CL . 
R 8 BR A 1 217 1 BR BR . 
S 9 HOH A 1 301 20 HOH HOH . 
S 9 HOH A 2 302 84 HOH HOH . 
S 9 HOH A 3 303 4 HOH HOH . 
S 9 HOH A 4 304 60 HOH HOH . 
S 9 HOH A 5 305 50 HOH HOH . 
S 9 HOH A 6 306 95 HOH HOH . 
S 9 HOH A 7 307 81 HOH HOH . 
S 9 HOH A 8 308 65 HOH HOH . 
S 9 HOH A 9 309 54 HOH HOH . 
S 9 HOH A 10 310 18 HOH HOH . 
S 9 HOH A 11 311 63 HOH HOH . 
S 9 HOH A 12 312 71 HOH HOH . 
S 9 HOH A 13 313 83 HOH HOH . 
S 9 HOH A 14 314 36 HOH HOH . 
S 9 HOH A 15 315 52 HOH HOH . 
S 9 HOH A 16 316 41 HOH HOH . 
S 9 HOH A 17 317 42 HOH HOH . 
S 9 HOH A 18 318 31 HOH HOH . 
S 9 HOH A 19 319 34 HOH HOH . 
S 9 HOH A 20 320 28 HOH HOH . 
S 9 HOH A 21 321 62 HOH HOH . 
S 9 HOH A 22 322 69 HOH HOH . 
S 9 HOH A 23 323 19 HOH HOH . 
S 9 HOH A 24 324 68 HOH HOH . 
S 9 HOH A 25 325 79 HOH HOH . 
S 9 HOH A 26 326 35 HOH HOH . 
S 9 HOH A 27 327 58 HOH HOH . 
S 9 HOH A 28 328 1 HOH HOH . 
S 9 HOH A 29 329 78 HOH HOH . 
S 9 HOH A 30 330 27 HOH HOH . 
S 9 HOH A 31 331 17 HOH HOH . 
S 9 HOH A 32 332 2 HOH HOH . 
S 9 HOH A 33 333 12 HOH HOH . 
S 9 HOH A 34 334 46 HOH HOH . 
S 9 HOH A 35 335 86 HOH HOH . 
S 9 HOH A 36 336 11 HOH HOH . 
S 9 HOH A 37 337 57 HOH HOH . 
S 9 HOH A 38 338 74 HOH HOH . 
S 9 HOH A 39 339 51 HOH HOH . 
S 9 HOH A 40 340 10 HOH HOH . 
S 9 HOH A 41 341 48 HOH HOH . 
S 9 HOH A 42 342 105 HOH HOH . 
S 9 HOH A 43 343 21 HOH HOH . 
S 9 HOH A 44 344 59 HOH HOH . 
S 9 HOH A 45 345 8 HOH HOH . 
S 9 HOH A 46 346 29 HOH HOH . 
S 9 HOH A 47 347 101 HOH HOH . 
S 9 HOH A 48 348 75 HOH HOH . 
S 9 HOH A 49 349 73 HOH HOH . 
S 9 HOH A 50 350 33 HOH HOH . 
S 9 HOH A 51 351 89 HOH HOH . 
S 9 HOH A 52 352 64 HOH HOH . 
S 9 HOH A 53 353 30 HOH HOH . 
S 9 HOH A 54 354 22 HOH HOH . 
S 9 HOH A 55 355 15 HOH HOH . 
S 9 HOH A 56 356 53 HOH HOH . 
S 9 HOH A 57 357 49 HOH HOH . 
S 9 HOH A 58 358 39 HOH HOH . 
S 9 HOH A 59 359 97 HOH HOH . 
S 9 HOH A 60 360 55 HOH HOH . 
S 9 HOH A 61 361 72 HOH HOH . 
S 9 HOH A 62 362 70 HOH HOH . 
S 9 HOH A 63 363 3 HOH HOH . 
S 9 HOH A 64 364 80 HOH HOH . 
S 9 HOH A 65 365 47 HOH HOH . 
S 9 HOH A 66 366 40 HOH HOH . 
S 9 HOH A 67 367 13 HOH HOH . 
S 9 HOH A 68 368 43 HOH HOH . 
S 9 HOH A 69 369 92 HOH HOH . 
S 9 HOH A 70 370 45 HOH HOH . 
S 9 HOH A 71 371 66 HOH HOH . 
S 9 HOH A 72 372 7 HOH HOH . 
S 9 HOH A 73 373 56 HOH HOH . 
S 9 HOH A 74 374 87 HOH HOH . 
S 9 HOH A 75 375 6 HOH HOH . 
S 9 HOH A 76 376 76 HOH HOH . 
S 9 HOH A 77 377 67 HOH HOH . 
S 9 HOH A 78 378 85 HOH HOH . 
S 9 HOH A 79 379 91 HOH HOH . 
S 9 HOH A 80 380 112 HOH HOH . 
S 9 HOH A 81 381 93 HOH HOH . 
S 9 HOH A 82 382 44 HOH HOH . 
S 9 HOH A 83 383 88 HOH HOH . 
S 9 HOH A 84 384 94 HOH HOH . 
S 9 HOH A 85 385 143 HOH HOH . 
S 9 HOH A 86 386 77 HOH HOH . 
S 9 HOH A 87 387 16 HOH HOH . 
S 9 HOH A 88 388 107 HOH HOH . 
S 9 HOH A 89 389 82 HOH HOH . 
S 9 HOH A 90 390 98 HOH HOH . 
S 9 HOH A 91 391 115 HOH HOH . 
S 9 HOH A 92 392 103 HOH HOH . 
S 9 HOH A 93 393 24 HOH HOH . 
S 9 HOH A 94 394 90 HOH HOH . 
S 9 HOH A 95 395 26 HOH HOH . 
S 9 HOH A 96 396 96 HOH HOH . 
S 9 HOH A 97 397 99 HOH HOH . 
S 9 HOH A 98 398 14 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 VHL . . . I 4 -12.009 35.66 4.33 0.53 22.48 ? C1 VHL 208 A 1 
HETATM 2 C C2 VHL . . . I 4 -9.367 36.182 3.965 0.53 21.36 ? C2 VHL 208 A 1 
HETATM 3 C C3 VHL . . . I 4 -10.318 34.11 5.439 0.53 21.03 ? C3 VHL 208 A 1 
HETATM 4 C C6 VHL . . . I 4 -13.163 35.558 7.26 0.53 24.68 ? C6 VHL 208 A 1 
HETATM 5 C C5 VHL . . . I 4 -13.6 35.649 8.502 0.53 25.03 ? C5 VHL 208 A 1 
HETATM 6 C C4 VHL . . . I 4 -11.499 36.225 8.451 0.53 24.46 ? C4 VHL 208 A 1 
HETATM 7 C C7 VHL . . . I 4 -10.289 39.02 6.28 0.53 23.23 ? C7 VHL 208 A 1 
HETATM 8 C C9 VHL . . . I 4 -11.689 38.878 4.675 0.53 23.81 ? C9 VHL 208 A 1 
HETATM 9 C C8 VHL . . . I 4 -11.59 40.179 5.022 0.53 23.86 ? C8 VHL 208 A 1 
HETATM 10 N N1 VHL . . . I 4 -11.82 35.926 7.206 0.53 23.03 ? N1 VHL 208 A 1 
HETATM 11 N N2 VHL . . . I 4 -12.546 36.075 9.26 0.53 25.36 ? N2 VHL 208 A 1 
HETATM 12 N N3 VHL . . . I 4 -10.866 38.127 5.503 0.53 21.91 ? N3 VHL 208 A 1 
HETATM 13 N N4 VHL . . . I 4 -10.733 40.255 6.012 0.53 24.45 ? N4 VHL 208 A 1 
HETATM 14 O O1 VHL . . . I 4 -12.903 35.47 3.606 0.53 23.89 ? O1 VHL 208 A 1 
HETATM 15 O O2 VHL . . . I 4 -8.654 36.279 3.07 0.53 23.77 ? O2 VHL 208 A 1 
HETATM 16 O O3 VHL . . . I 4 -10.222 32.994 5.387 0.53 22.43 ? O3 VHL 208 A 1 
HETATM 17 RE RE VHL . . . I 4 -10.541 35.989 5.459 0.53 21.39 ? RE VHL 208 A 1 
HETATM 18 H H61 VHL . . . I 4 -13.675 35.292 6.531 0.53 29.63 ? H61 VHL 208 A 1 
HETATM 19 H H51 VHL . . . I 4 -14.457 35.459 8.802 0.53 30.04 ? H51 VHL 208 A 1 
HETATM 20 H H41 VHL . . . I 4 -10.657 36.51 8.724 0.53 29.36 ? H41 VHL 208 A 1 
HETATM 21 H H71 VHL . . . I 4 -9.686 38.816 6.958 0.53 27.88 ? H71 VHL 208 A 1 
HETATM 22 H H91 VHL . . . I 4 -12.218 38.539 3.99 0.53 28.58 ? H91 VHL 208 A 1 
HETATM 23 H H81 VHL . . . I 4 -11.996 40.891 4.621 0.53 28.63 ? H81 VHL 208 A 1 
HETATM 24 H H21 VHL . . . I 4 -12.555 36.214 10.109 0.53 30.44 ? H21 VHL 208 A 1 
HETATM 25 H H42 VHL . . . I 4 -10.486 40.975 6.412 0.53 29.35 ? H42 VHL 208 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           25 
#