data_8QCZ # _model_server_result.job_id UO-zhdnx_cnCuIkq-ZQ7fg _model_server_result.datetime_utc '2024-10-10 03:29:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qcz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 8QCZ # _exptl.entry_id 8QCZ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8QCZ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QCZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 8QCZ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id HEM _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 601 _pdbx_nonpoly_scheme.auth_seq_num 601 _pdbx_nonpoly_scheme.pdb_mon_id HEM _pdbx_nonpoly_scheme.auth_mon_id HEM _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 96.435 101.682 65.917 1 181.98 ? CHA HEM 601 A 1 HETATM 2 C CHB HEM . . . B 2 99.736 103.842 63.091 1 182.81 ? CHB HEM 601 A 1 HETATM 3 C CHC HEM . . . B 2 96.773 107.638 62.538 1 182.18 ? CHC HEM 601 A 1 HETATM 4 C CHD HEM . . . B 2 93.977 105.874 66.093 1 182.57 ? CHD HEM 601 A 1 HETATM 5 C C1A HEM . . . B 2 97.592 101.914 65.2 1 184.46 ? C1A HEM 601 A 1 HETATM 6 C C2A HEM . . . B 2 98.733 101.027 65.071 1 184.97 ? C2A HEM 601 A 1 HETATM 7 C C3A HEM . . . B 2 99.641 101.628 64.294 1 185.07 ? C3A HEM 601 A 1 HETATM 8 C C4A HEM . . . B 2 99.111 102.915 63.896 1 184.59 ? C4A HEM 601 A 1 HETATM 9 C CMA HEM . . . B 2 101.017 101.061 63.881 1 182.36 ? CMA HEM 601 A 1 HETATM 10 C CAA HEM . . . B 2 98.883 99.635 65.722 1 182.19 ? CAA HEM 601 A 1 HETATM 11 C CBA HEM . . . B 2 98.648 98.549 64.676 1 181.93 ? CBA HEM 601 A 1 HETATM 12 C CGA HEM . . . B 2 99.871 97.675 64.588 1 182.61 ? CGA HEM 601 A 1 HETATM 13 O O1A HEM . . . B 2 99.831 96.658 63.849 1 183.87 ? O1A HEM 601 A 1 HETATM 14 O O2A HEM . . . B 2 100.888 97.996 65.255 1 180.59 ? O2A HEM 601 A 1 HETATM 15 C C1B HEM . . . B 2 99.149 104.976 62.573 1 183.97 ? C1B HEM 601 A 1 HETATM 16 C C2B HEM . . . B 2 99.542 105.668 61.364 1 184.26 ? C2B HEM 601 A 1 HETATM 17 C C3B HEM . . . B 2 98.735 106.72 61.195 1 184.92 ? C3B HEM 601 A 1 HETATM 18 C C4B HEM . . . B 2 97.788 106.734 62.303 1 183.77 ? C4B HEM 601 A 1 HETATM 19 C CMB HEM . . . B 2 100.7 105.259 60.429 1 181.29 ? CMB HEM 601 A 1 HETATM 20 C CAB HEM . . . B 2 98.847 107.706 60.006 1 183.65 ? CAB HEM 601 A 1 HETATM 21 C CBB HEM . . . B 2 98.044 108.766 59.855 1 181.86 ? CBB HEM 601 A 1 HETATM 22 C C1C HEM . . . B 2 95.808 107.543 63.519 1 183.48 ? C1C HEM 601 A 1 HETATM 23 C C2C HEM . . . B 2 94.886 108.585 63.915 1 183.52 ? C2C HEM 601 A 1 HETATM 24 C C3C HEM . . . B 2 94.107 108.117 64.894 1 183.29 ? C3C HEM 601 A 1 HETATM 25 C C4C HEM . . . B 2 94.509 106.742 65.161 1 183.79 ? C4C HEM 601 A 1 HETATM 26 C CMC HEM . . . B 2 94.814 110.003 63.307 1 182.41 ? CMC HEM 601 A 1 HETATM 27 C CAC HEM . . . B 2 92.991 108.948 65.578 1 182.12 ? CAC HEM 601 A 1 HETATM 28 C CBC HEM . . . B 2 92.214 108.469 66.555 1 181.7 ? CBC HEM 601 A 1 HETATM 29 C C1D HEM . . . B 2 94.4 104.589 66.36 1 183.79 ? C1D HEM 601 A 1 HETATM 30 C C2D HEM . . . B 2 93.847 103.706 67.365 1 183.85 ? C2D HEM 601 A 1 HETATM 31 C C3D HEM . . . B 2 94.518 102.55 67.324 1 183.76 ? C3D HEM 601 A 1 HETATM 32 C C4D HEM . . . B 2 95.527 102.653 66.286 1 183.28 ? C4D HEM 601 A 1 HETATM 33 C CMD HEM . . . B 2 92.681 104.058 68.316 1 181.5 ? CMD HEM 601 A 1 HETATM 34 C CAD HEM . . . B 2 94.259 101.323 68.226 1 182.05 ? CAD HEM 601 A 1 HETATM 35 C CBD HEM . . . B 2 93.041 100.557 67.718 1 181.63 ? CBD HEM 601 A 1 HETATM 36 C CGD HEM . . . B 2 92.2 100.119 68.887 1 180.79 ? CGD HEM 601 A 1 HETATM 37 O O1D HEM . . . B 2 91.173 99.429 68.663 1 181.08 ? O1D HEM 601 A 1 HETATM 38 O O2D HEM . . . B 2 92.555 100.462 70.044 1 179.61 ? O2D HEM 601 A 1 HETATM 39 N NA HEM . . . B 2 97.861 103.055 64.467 1 185.69 ? NA HEM 601 A 1 HETATM 40 N NB HEM . . . B 2 98.077 105.654 63.117 1 185.5 ? NB HEM 601 A 1 HETATM 41 N NC HEM . . . B 2 95.548 106.434 64.301 1 185.62 ? NC HEM 601 A 1 HETATM 42 N ND HEM . . . B 2 95.422 103.912 65.721 1 184.78 ? ND HEM 601 A 1 HETATM 43 FE FE HEM . . . B 2 96.733 104.765 64.399 1 196.95 ? FE HEM 601 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #