data_8QD6 # _model_server_result.job_id eCMTf54mLMhY3biMEOnJQw _model_server_result.datetime_utc '2025-01-10 18:57:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qd6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 8QD6 # _exptl.entry_id 8QD6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8QD6 _cell.length_a 54.72 _cell.length_b 154.97 _cell.length_c 91.37 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QD6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_557 x,-y,-z+2 1 0 0 0 -1 0 0 0 -1 0 0 182.74 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 260 A ILE 244 1_555 A N DHA 261 A DHA 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C DHA 261 A DHA 245 1_555 A N PHE 262 A PHE 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A O LEU 244 A LEU 228 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc2 A O GLU 245 A GLU 229 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.102 ? metalc ? metalc3 A O ASP 247 A ASP 231 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc4 A O ILE 250 A ILE 234 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 8QD6 _atom_sites.fract_transf_matrix[1][1] 0.018275 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006453 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010945 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 401 1 NA NA . C 3 PG4 A 1 402 7 PG4 PG4 . D 4 ACT A 1 403 8 ACT ACT . E 5 HOH A 1 501 223 HOH HOH . E 5 HOH A 2 502 43 HOH HOH . E 5 HOH A 3 503 225 HOH HOH . E 5 HOH A 4 504 81 HOH HOH . E 5 HOH A 5 505 51 HOH HOH . E 5 HOH A 6 506 181 HOH HOH . E 5 HOH A 7 507 112 HOH HOH . E 5 HOH A 8 508 63 HOH HOH . E 5 HOH A 9 509 47 HOH HOH . E 5 HOH A 10 510 92 HOH HOH . E 5 HOH A 11 511 41 HOH HOH . E 5 HOH A 12 512 192 HOH HOH . E 5 HOH A 13 513 179 HOH HOH . E 5 HOH A 14 514 23 HOH HOH . E 5 HOH A 15 515 57 HOH HOH . E 5 HOH A 16 516 83 HOH HOH . E 5 HOH A 17 517 71 HOH HOH . E 5 HOH A 18 518 184 HOH HOH . E 5 HOH A 19 519 146 HOH HOH . E 5 HOH A 20 520 24 HOH HOH . E 5 HOH A 21 521 167 HOH HOH . E 5 HOH A 22 522 96 HOH HOH . E 5 HOH A 23 523 243 HOH HOH . E 5 HOH A 24 524 105 HOH HOH . E 5 HOH A 25 525 123 HOH HOH . E 5 HOH A 26 526 187 HOH HOH . E 5 HOH A 27 527 212 HOH HOH . E 5 HOH A 28 528 159 HOH HOH . E 5 HOH A 29 529 97 HOH HOH . E 5 HOH A 30 530 28 HOH HOH . E 5 HOH A 31 531 151 HOH HOH . E 5 HOH A 32 532 197 HOH HOH . E 5 HOH A 33 533 88 HOH HOH . E 5 HOH A 34 534 118 HOH HOH . E 5 HOH A 35 535 128 HOH HOH . E 5 HOH A 36 536 52 HOH HOH . E 5 HOH A 37 537 40 HOH HOH . E 5 HOH A 38 538 122 HOH HOH . E 5 HOH A 39 539 186 HOH HOH . E 5 HOH A 40 540 132 HOH HOH . E 5 HOH A 41 541 125 HOH HOH . E 5 HOH A 42 542 108 HOH HOH . E 5 HOH A 43 543 17 HOH HOH . E 5 HOH A 44 544 200 HOH HOH . E 5 HOH A 45 545 31 HOH HOH . E 5 HOH A 46 546 13 HOH HOH . E 5 HOH A 47 547 32 HOH HOH . E 5 HOH A 48 548 55 HOH HOH . E 5 HOH A 49 549 102 HOH HOH . E 5 HOH A 50 550 75 HOH HOH . E 5 HOH A 51 551 198 HOH HOH . E 5 HOH A 52 552 101 HOH HOH . E 5 HOH A 53 553 56 HOH HOH . E 5 HOH A 54 554 189 HOH HOH . E 5 HOH A 55 555 148 HOH HOH . E 5 HOH A 56 556 210 HOH HOH . E 5 HOH A 57 557 70 HOH HOH . E 5 HOH A 58 558 50 HOH HOH . E 5 HOH A 59 559 45 HOH HOH . E 5 HOH A 60 560 60 HOH HOH . E 5 HOH A 61 561 64 HOH HOH . E 5 HOH A 62 562 44 HOH HOH . E 5 HOH A 63 563 25 HOH HOH . E 5 HOH A 64 564 180 HOH HOH . E 5 HOH A 65 565 143 HOH HOH . E 5 HOH A 66 566 39 HOH HOH . E 5 HOH A 67 567 36 HOH HOH . E 5 HOH A 68 568 202 HOH HOH . E 5 HOH A 69 569 250 HOH HOH . E 5 HOH A 70 570 68 HOH HOH . E 5 HOH A 71 571 135 HOH HOH . E 5 HOH A 72 572 21 HOH HOH . E 5 HOH A 73 573 46 HOH HOH . E 5 HOH A 74 574 84 HOH HOH . E 5 HOH A 75 575 59 HOH HOH . E 5 HOH A 76 576 78 HOH HOH . E 5 HOH A 77 577 65 HOH HOH . E 5 HOH A 78 578 201 HOH HOH . E 5 HOH A 79 579 249 HOH HOH . E 5 HOH A 80 580 61 HOH HOH . E 5 HOH A 81 581 175 HOH HOH . E 5 HOH A 82 582 62 HOH HOH . E 5 HOH A 83 583 19 HOH HOH . E 5 HOH A 84 584 29 HOH HOH . E 5 HOH A 85 585 22 HOH HOH . E 5 HOH A 86 586 220 HOH HOH . E 5 HOH A 87 587 152 HOH HOH . E 5 HOH A 88 588 49 HOH HOH . E 5 HOH A 89 589 58 HOH HOH . E 5 HOH A 90 590 76 HOH HOH . E 5 HOH A 91 591 99 HOH HOH . E 5 HOH A 92 592 139 HOH HOH . E 5 HOH A 93 593 129 HOH HOH . E 5 HOH A 94 594 33 HOH HOH . E 5 HOH A 95 595 98 HOH HOH . E 5 HOH A 96 596 87 HOH HOH . E 5 HOH A 97 597 15 HOH HOH . E 5 HOH A 98 598 113 HOH HOH . E 5 HOH A 99 599 133 HOH HOH . E 5 HOH A 100 600 104 HOH HOH . E 5 HOH A 101 601 16 HOH HOH . E 5 HOH A 102 602 221 HOH HOH . E 5 HOH A 103 603 86 HOH HOH . E 5 HOH A 104 604 42 HOH HOH . E 5 HOH A 105 605 20 HOH HOH . E 5 HOH A 106 606 12 HOH HOH . E 5 HOH A 107 607 196 HOH HOH . E 5 HOH A 108 608 158 HOH HOH . E 5 HOH A 109 609 38 HOH HOH . E 5 HOH A 110 610 204 HOH HOH . E 5 HOH A 111 611 30 HOH HOH . E 5 HOH A 112 612 77 HOH HOH . E 5 HOH A 113 613 120 HOH HOH . E 5 HOH A 114 614 94 HOH HOH . E 5 HOH A 115 615 232 HOH HOH . E 5 HOH A 116 616 54 HOH HOH . E 5 HOH A 117 617 237 HOH HOH . E 5 HOH A 118 618 162 HOH HOH . E 5 HOH A 119 619 121 HOH HOH . E 5 HOH A 120 620 100 HOH HOH . E 5 HOH A 121 621 85 HOH HOH . E 5 HOH A 122 622 48 HOH HOH . E 5 HOH A 123 623 178 HOH HOH . E 5 HOH A 124 624 138 HOH HOH . E 5 HOH A 125 625 14 HOH HOH . E 5 HOH A 126 626 90 HOH HOH . E 5 HOH A 127 627 214 HOH HOH . E 5 HOH A 128 628 18 HOH HOH . E 5 HOH A 129 629 228 HOH HOH . E 5 HOH A 130 630 80 HOH HOH . E 5 HOH A 131 631 35 HOH HOH . E 5 HOH A 132 632 69 HOH HOH . E 5 HOH A 133 633 109 HOH HOH . E 5 HOH A 134 634 199 HOH HOH . E 5 HOH A 135 635 74 HOH HOH . E 5 HOH A 136 636 116 HOH HOH . E 5 HOH A 137 637 165 HOH HOH . E 5 HOH A 138 638 34 HOH HOH . E 5 HOH A 139 639 240 HOH HOH . E 5 HOH A 140 640 194 HOH HOH . E 5 HOH A 141 641 67 HOH HOH . E 5 HOH A 142 642 117 HOH HOH . E 5 HOH A 143 643 142 HOH HOH . E 5 HOH A 144 644 160 HOH HOH . E 5 HOH A 145 645 164 HOH HOH . E 5 HOH A 146 646 111 HOH HOH . E 5 HOH A 147 647 27 HOH HOH . E 5 HOH A 148 648 91 HOH HOH . E 5 HOH A 149 649 141 HOH HOH . E 5 HOH A 150 650 124 HOH HOH . E 5 HOH A 151 651 213 HOH HOH . E 5 HOH A 152 652 136 HOH HOH . E 5 HOH A 153 653 103 HOH HOH . E 5 HOH A 154 654 193 HOH HOH . E 5 HOH A 155 655 107 HOH HOH . E 5 HOH A 156 656 218 HOH HOH . E 5 HOH A 157 657 171 HOH HOH . E 5 HOH A 158 658 182 HOH HOH . E 5 HOH A 159 659 140 HOH HOH . E 5 HOH A 160 660 93 HOH HOH . E 5 HOH A 161 661 177 HOH HOH . E 5 HOH A 162 662 190 HOH HOH . E 5 HOH A 163 663 79 HOH HOH . E 5 HOH A 164 664 26 HOH HOH . E 5 HOH A 165 665 66 HOH HOH . E 5 HOH A 166 666 205 HOH HOH . E 5 HOH A 167 667 37 HOH HOH . E 5 HOH A 168 668 10 HOH HOH . E 5 HOH A 169 669 11 HOH HOH . E 5 HOH A 170 670 168 HOH HOH . E 5 HOH A 171 671 89 HOH HOH . E 5 HOH A 172 672 149 HOH HOH . E 5 HOH A 173 673 206 HOH HOH . E 5 HOH A 174 674 208 HOH HOH . E 5 HOH A 175 675 53 HOH HOH . E 5 HOH A 176 676 150 HOH HOH . E 5 HOH A 177 677 173 HOH HOH . E 5 HOH A 178 678 222 HOH HOH . E 5 HOH A 179 679 153 HOH HOH . E 5 HOH A 180 680 241 HOH HOH . E 5 HOH A 181 681 144 HOH HOH . E 5 HOH A 182 682 216 HOH HOH . E 5 HOH A 183 683 115 HOH HOH . E 5 HOH A 184 684 137 HOH HOH . E 5 HOH A 185 685 73 HOH HOH . E 5 HOH A 186 686 203 HOH HOH . E 5 HOH A 187 687 95 HOH HOH . E 5 HOH A 188 688 119 HOH HOH . E 5 HOH A 189 689 145 HOH HOH . E 5 HOH A 190 690 172 HOH HOH . E 5 HOH A 191 691 155 HOH HOH . E 5 HOH A 192 692 239 HOH HOH . E 5 HOH A 193 693 114 HOH HOH . E 5 HOH A 194 694 215 HOH HOH . E 5 HOH A 195 695 209 HOH HOH . E 5 HOH A 196 696 183 HOH HOH . E 5 HOH A 197 697 195 HOH HOH . E 5 HOH A 198 698 217 HOH HOH . E 5 HOH A 199 699 163 HOH HOH . E 5 HOH A 200 700 226 HOH HOH . E 5 HOH A 201 701 236 HOH HOH . E 5 HOH A 202 702 219 HOH HOH . E 5 HOH A 203 703 185 HOH HOH . E 5 HOH A 204 704 110 HOH HOH . E 5 HOH A 205 705 191 HOH HOH . E 5 HOH A 206 706 169 HOH HOH . E 5 HOH A 207 707 234 HOH HOH . E 5 HOH A 208 708 170 HOH HOH . E 5 HOH A 209 709 231 HOH HOH . E 5 HOH A 210 710 235 HOH HOH . E 5 HOH A 211 711 131 HOH HOH . E 5 HOH A 212 712 127 HOH HOH . E 5 HOH A 213 713 147 HOH HOH . E 5 HOH A 214 714 230 HOH HOH . E 5 HOH A 215 715 229 HOH HOH . E 5 HOH A 216 716 174 HOH HOH . E 5 HOH A 217 717 134 HOH HOH . E 5 HOH A 218 718 130 HOH HOH . E 5 HOH A 219 719 154 HOH HOH . E 5 HOH A 220 720 247 HOH HOH . E 5 HOH A 221 721 188 HOH HOH . E 5 HOH A 222 722 248 HOH HOH . E 5 HOH A 223 723 224 HOH HOH . E 5 HOH A 224 724 251 HOH HOH . E 5 HOH A 225 725 72 HOH HOH . E 5 HOH A 226 726 126 HOH HOH . E 5 HOH A 227 727 161 HOH HOH . E 5 HOH A 228 728 157 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . D 4 0.48 17.688 94.062 1 37.71 ? C ACT 403 A 1 HETATM 2 O O ACT . . . D 4 0.691 17.849 92.839 1 39.5 ? O ACT 403 A 1 HETATM 3 O OXT ACT . . . D 4 -0.644 17.439 94.553 1 36.45 ? OXT ACT 403 A 1 HETATM 4 C CH3 ACT . . . D 4 1.669 17.806 95.017 1 38.92 ? CH3 ACT 403 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #