data_8QDO # _model_server_result.job_id sF2fclvxTtev-9SWiVbczQ _model_server_result.datetime_utc '2025-03-06 01:05:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qdo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 8QDO # _exptl.entry_id 8QDO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8QDO _cell.length_a 90.61 _cell.length_b 137.44 _cell.length_c 275.12 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QDO _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall 'I 2b 2c' _symmetry.space_group_name_H-M 'I 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 237 n n O1 HO1 PG4 sing 238 n n C1 C2 PG4 sing 239 n n C1 H11 PG4 sing 240 n n C1 H12 PG4 sing 241 n n C2 O2 PG4 sing 242 n n C2 H21 PG4 sing 243 n n C2 H22 PG4 sing 244 n n O2 C3 PG4 sing 245 n n C3 C4 PG4 sing 246 n n C3 H31 PG4 sing 247 n n C3 H32 PG4 sing 248 n n C4 O3 PG4 sing 249 n n C4 H41 PG4 sing 250 n n C4 H42 PG4 sing 251 n n O3 C5 PG4 sing 252 n n C5 C6 PG4 sing 253 n n C5 H51 PG4 sing 254 n n C5 H52 PG4 sing 255 n n C6 O4 PG4 sing 256 n n C6 H61 PG4 sing 257 n n C6 H62 PG4 sing 258 n n O4 C7 PG4 sing 259 n n C7 C8 PG4 sing 260 n n C7 H71 PG4 sing 261 n n C7 H72 PG4 sing 262 n n C8 O5 PG4 sing 263 n n C8 H81 PG4 sing 264 n n C8 H82 PG4 sing 265 n n O5 HO5 PG4 sing 266 n n # _atom_sites.entry_id 8QDO _atom_sites.fract_transf_matrix[1][1] 0.011036 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007276 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003635 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PG4 A 1 601 601 PG4 PG4 . D 3 HOH A 1 701 18 HOH HOH . D 3 HOH A 2 702 2 HOH HOH . D 3 HOH A 3 703 16 HOH HOH . D 3 HOH A 4 704 38 HOH HOH . D 3 HOH A 5 705 34 HOH HOH . D 3 HOH A 6 706 4 HOH HOH . D 3 HOH A 7 707 8 HOH HOH . D 3 HOH A 8 708 11 HOH HOH . D 3 HOH A 9 709 15 HOH HOH . D 3 HOH A 10 710 12 HOH HOH . D 3 HOH A 11 711 40 HOH HOH . D 3 HOH A 12 712 1 HOH HOH . D 3 HOH A 13 713 48 HOH HOH . D 3 HOH A 14 714 17 HOH HOH . D 3 HOH A 15 715 42 HOH HOH . D 3 HOH A 16 716 3 HOH HOH . D 3 HOH A 17 717 52 HOH HOH . D 3 HOH A 18 718 5 HOH HOH . D 3 HOH A 19 719 36 HOH HOH . D 3 HOH A 20 720 30 HOH HOH . D 3 HOH A 21 721 10 HOH HOH . D 3 HOH A 22 722 39 HOH HOH . D 3 HOH A 23 723 7 HOH HOH . D 3 HOH A 24 724 14 HOH HOH . D 3 HOH A 25 725 13 HOH HOH . D 3 HOH A 26 726 19 HOH HOH . E 3 HOH B 1 601 24 HOH HOH . E 3 HOH B 2 602 29 HOH HOH . E 3 HOH B 3 603 31 HOH HOH . E 3 HOH B 4 604 6 HOH HOH . E 3 HOH B 5 605 44 HOH HOH . E 3 HOH B 6 606 45 HOH HOH . E 3 HOH B 7 607 41 HOH HOH . E 3 HOH B 8 608 50 HOH HOH . E 3 HOH B 9 609 28 HOH HOH . E 3 HOH B 10 610 21 HOH HOH . E 3 HOH B 11 611 49 HOH HOH . E 3 HOH B 12 612 26 HOH HOH . E 3 HOH B 13 613 22 HOH HOH . E 3 HOH B 14 614 32 HOH HOH . E 3 HOH B 15 615 23 HOH HOH . E 3 HOH B 16 616 9 HOH HOH . E 3 HOH B 17 617 51 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . C 2 59.266 2.692 63.926 0.5 76.85 ? O1 PG4 601 A 1 HETATM 2 C C1 PG4 . . . C 2 59.664 2.314 65.216 0.5 78.63 ? C1 PG4 601 A 1 HETATM 3 C C2 PG4 . . . C 2 61.19 2.215 65.267 0.5 78.72 ? C2 PG4 601 A 1 HETATM 4 O O2 PG4 . . . C 2 61.654 2.399 66.579 0.5 84.15 ? O2 PG4 601 A 1 HETATM 5 C C3 PG4 . . . C 2 61.472 1.301 67.435 0.5 84.27 ? C3 PG4 601 A 1 HETATM 6 C C4 PG4 . . . C 2 62.817 0.623 67.716 0.5 82.64 ? C4 PG4 601 A 1 HETATM 7 O O3 PG4 . . . C 2 62.864 0.14 69.034 0.5 85.18 ? O3 PG4 601 A 1 HETATM 8 C C5 PG4 . . . C 2 61.781 -0.677 69.393 0.5 84.18 ? C5 PG4 601 A 1 HETATM 9 C C6 PG4 . . . C 2 62.128 -1.544 70.606 0.5 82.92 ? C6 PG4 601 A 1 HETATM 10 O O4 PG4 . . . C 2 60.993 -2.269 71.003 0.5 84.7 ? O4 PG4 601 A 1 HETATM 11 C C7 PG4 . . . C 2 61.075 -2.82 72.291 0.5 78.91 ? C7 PG4 601 A 1 HETATM 12 C C8 PG4 . . . C 2 60.145 -2.07 73.246 0.5 75.58 ? C8 PG4 601 A 1 HETATM 13 O O5 PG4 . . . C 2 58.891 -2.698 73.301 0.5 77.13 ? O5 PG4 601 A 1 HETATM 14 H HO1 PG4 . . . C 2 59.199 3.633 63.882 0.5 92.26 ? HO1 PG4 601 A 1 HETATM 15 H H11 PG4 . . . C 2 59.326 3.056 65.932 0.5 94.39 ? H11 PG4 601 A 1 HETATM 16 H H12 PG4 . . . C 2 59.23 1.351 65.461 0.5 94.39 ? H12 PG4 601 A 1 HETATM 17 H H21 PG4 . . . C 2 61.495 1.235 64.915 0.5 94.5 ? H21 PG4 601 A 1 HETATM 18 H H22 PG4 . . . C 2 61.619 2.978 64.627 0.5 94.5 ? H22 PG4 601 A 1 HETATM 19 H H31 PG4 . . . C 2 61.041 1.643 68.37 0.5 101.16 ? H31 PG4 601 A 1 HETATM 20 H H32 PG4 . . . C 2 60.802 0.588 66.967 0.5 101.16 ? H32 PG4 601 A 1 HETATM 21 H H41 PG4 . . . C 2 62.949 -0.205 67.028 0.5 99.21 ? H41 PG4 601 A 1 HETATM 22 H H42 PG4 . . . C 2 63.616 1.344 67.572 0.5 99.21 ? H42 PG4 601 A 1 HETATM 23 H H51 PG4 . . . C 2 60.929 -0.05 69.637 0.5 101.05 ? H51 PG4 601 A 1 HETATM 24 H H52 PG4 . . . C 2 61.528 -1.32 68.557 0.5 101.05 ? H52 PG4 601 A 1 HETATM 25 H H61 PG4 . . . C 2 62.924 -2.233 70.341 0.5 99.54 ? H61 PG4 601 A 1 HETATM 26 H H62 PG4 . . . C 2 62.456 -0.909 71.422 0.5 99.54 ? H62 PG4 601 A 1 HETATM 27 H H71 PG4 . . . C 2 60.784 -3.865 72.254 0.5 94.73 ? H71 PG4 601 A 1 HETATM 28 H H72 PG4 . . . C 2 62.096 -2.742 72.65 0.5 94.73 ? H72 PG4 601 A 1 HETATM 29 H H81 PG4 . . . C 2 60.583 -2.06 74.239 0.5 90.73 ? H81 PG4 601 A 1 HETATM 30 H H82 PG4 . . . C 2 60.019 -1.051 72.896 0.5 90.73 ? H82 PG4 601 A 1 HETATM 31 H HO5 PG4 . . . C 2 58.746 -3.192 72.509 0.5 92.59 ? HO5 PG4 601 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #