data_8QEL # _model_server_result.job_id sQdTpLU_RsbTEaBh8xwcyw _model_server_result.datetime_utc '2024-11-05 04:43:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qel # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":4000}' # _entry.id 8QEL # _exptl.entry_id 8QEL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 268.271 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3~{Z})-3-[(4-methyl-1~{H}-imidazol-5-yl)methylidene]-2-oxidanylidene-1~{H}-indole-5-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8QEL _cell.length_a 85.028 _cell.length_b 85.028 _cell.length_c 168.94 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QEL _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ARG 177 B ARG 445 1_555 B N TPO 178 B TPO 446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 B C TPO 178 B TPO 446 1_555 B N ARG 179 B ARG 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? # _chem_comp.formula 'C14 H12 N4 O2' _chem_comp.formula_weight 268.271 _chem_comp.id UH3 _chem_comp.mon_nstd_flag . _chem_comp.name (3~{Z})-3-[(4-methyl-1~{H}-imidazol-5-yl)methylidene]-2-oxidanylidene-1~{H}-indole-5-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 UH3 doub 377 n y C1 C6 UH3 sing 378 n y C1 C14 UH3 sing 379 n n C2 C3 UH3 sing 380 n y C3 C4 UH3 doub 381 n y C3 C8 UH3 sing 382 n n C4 C5 UH3 sing 383 n y C4 N1 UH3 sing 384 n n C5 C6 UH3 doub 385 n y N1 C7 UH3 sing 386 n n C7 C8 UH3 sing 387 n n C7 O1 UH3 doub 388 n n C8 C9 UH3 doub 389 z n C9 C10 UH3 sing 390 n n C10 C11 UH3 doub 391 n y C10 N3 UH3 sing 392 n y C11 N2 UH3 sing 393 n y C11 C13 UH3 sing 394 n n N2 C12 UH3 doub 395 n y C12 N3 UH3 sing 396 n y C14 N4 UH3 sing 397 n n C14 O2 UH3 doub 398 n n N1 H1 UH3 sing 399 n n C9 H9 UH3 sing 400 n n C5 H5 UH3 sing 401 n n C6 H6 UH3 sing 402 n n N3 H3 UH3 sing 403 n n C2 H2 UH3 sing 404 n n N4 H41 UH3 sing 405 n n N4 H42 UH3 sing 406 n n C12 H12 UH3 sing 407 n n C13 H132 UH3 sing 408 n n C13 H133 UH3 sing 409 n n C13 H131 UH3 sing 410 n n # _atom_sites.entry_id 8QEL _atom_sites.fract_transf_matrix[1][1] 0.011761 _atom_sites.fract_transf_matrix[1][2] 0.00679 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01358 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005919 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id UH3 _pdbx_nonpoly_scheme.pdb_strand_id B _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 4000 _pdbx_nonpoly_scheme.auth_seq_num 4000 _pdbx_nonpoly_scheme.pdb_mon_id UH3 _pdbx_nonpoly_scheme.auth_mon_id XXX _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 UH3 . . . C 3 -46.493 10.9 20.012 1 70.86 ? N1 UH3 4000 B 1 HETATM 2 C C7 UH3 . . . C 3 -46.323 11.447 18.787 1 71.06 ? C7 UH3 4000 B 1 HETATM 3 C C8 UH3 . . . C 3 -45.623 12.763 18.99 1 71.71 ? C8 UH3 4000 B 1 HETATM 4 N N2 UH3 . . . C 3 -45.708 14.688 14.554 1 73.84 ? N2 UH3 4000 B 1 HETATM 5 C C9 UH3 . . . C 3 -45.344 13.7 18.049 1 72.86 ? C9 UH3 4000 B 1 HETATM 6 O O1 UH3 . . . C 3 -46.622 10.923 17.72 1 70.93 ? O1 UH3 4000 B 1 HETATM 7 C C1 UH3 . . . C 3 -44.835 13.645 22.644 1 70.92 ? C1 UH3 4000 B 1 HETATM 8 C C5 UH3 . . . C 3 -45.965 11.514 22.385 1 70.73 ? C5 UH3 4000 B 1 HETATM 9 C C6 UH3 . . . C 3 -45.412 12.494 23.193 1 70.69 ? C6 UH3 4000 B 1 HETATM 10 N N3 UH3 . . . C 3 -46.216 12.926 15.819 1 73.88 ? N3 UH3 4000 B 1 HETATM 11 C C4 UH3 . . . C 3 -45.957 11.705 21.009 1 70.99 ? C4 UH3 4000 B 1 HETATM 12 C C3 UH3 . . . C 3 -45.388 12.857 20.424 1 71.27 ? C3 UH3 4000 B 1 HETATM 13 C C2 UH3 . . . C 3 -44.811 13.818 21.257 1 71.02 ? C2 UH3 4000 B 1 HETATM 14 N N4 UH3 . . . C 3 -43.935 15.876 23.027 1 71.5 ? N4 UH3 4000 B 1 HETATM 15 C C10 UH3 . . . C 3 -45.56 13.815 16.64 1 73.77 ? C10 UH3 4000 B 1 HETATM 16 C C11 UH3 . . . C 3 -45.249 14.895 15.839 1 74.04 ? C11 UH3 4000 B 1 HETATM 17 C C12 UH3 . . . C 3 -46.28 13.492 14.595 1 73.82 ? C12 UH3 4000 B 1 HETATM 18 C C13 UH3 . . . C 3 -44.535 16.158 16.194 1 74.04 ? C13 UH3 4000 B 1 HETATM 19 C C14 UH3 . . . C 3 -44.242 14.694 23.553 1 71.25 ? C14 UH3 4000 B 1 HETATM 20 O O2 UH3 . . . C 3 -44.049 14.427 24.749 1 71.2 ? O2 UH3 4000 B 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 20 #