data_8QER # _model_server_result.job_id tnJxupV_U5jXAFaikphLfA _model_server_result.datetime_utc '2024-11-13 10:59:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qer # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":508}' # _entry.id 8QER # _exptl.entry_id 8QER _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8QER _cell.length_a 100.322 _cell.length_b 103.969 _cell.length_c 140.729 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QER _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,Y 1 1,2 B,O,P,Q,R,S,T,U,V,W,X,Z 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 -x-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -100.322 0 70.3645 3 'crystal symmetry operation' 4_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 140.729 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 K N N ? 4 S N N ? 4 T N N ? 4 U N N ? 4 V N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 8QER _atom_sites.fract_transf_matrix[1][1] 0.009968 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009618 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007106 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UGL A 1 501 500 UGL I11 . D 3 FMT A 1 502 1 FMT FMT . E 3 FMT A 1 503 3 FMT FMT . F 3 FMT A 1 504 4 FMT FMT . G 3 FMT A 1 505 5 FMT FMT . H 3 FMT A 1 506 6 FMT FMT . I 3 FMT A 1 507 8 FMT FMT . J 3 FMT A 1 508 10 FMT FMT . K 4 DMS A 1 509 11 DMS DMS . L 5 EDO A 1 510 12 EDO EDO . M 6 CL A 1 511 2 CL CL . N 6 CL A 1 512 3 CL CL . O 2 UGL B 1 501 501 UGL I11 . P 3 FMT B 1 502 2 FMT FMT . Q 3 FMT B 1 503 7 FMT FMT . R 3 FMT B 1 504 9 FMT FMT . S 4 DMS B 1 505 13 DMS DMS . T 4 DMS B 1 506 14 DMS DMS . U 4 DMS B 1 507 15 DMS DMS . V 4 DMS B 1 508 16 DMS DMS . W 6 CL B 1 509 1 CL CL . X 6 CL B 1 510 4 CL CL . Y 7 HOH A 1 601 21 HOH HOH . Y 7 HOH A 2 602 200 HOH HOH . Y 7 HOH A 3 603 43 HOH HOH . Y 7 HOH A 4 604 45 HOH HOH . Y 7 HOH A 5 605 199 HOH HOH . Y 7 HOH A 6 606 33 HOH HOH . Y 7 HOH A 7 607 205 HOH HOH . Y 7 HOH A 8 608 42 HOH HOH . Y 7 HOH A 9 609 29 HOH HOH . Y 7 HOH A 10 610 55 HOH HOH . Y 7 HOH A 11 611 64 HOH HOH . Y 7 HOH A 12 612 28 HOH HOH . Y 7 HOH A 13 613 179 HOH HOH . Y 7 HOH A 14 614 12 HOH HOH . Y 7 HOH A 15 615 10 HOH HOH . Y 7 HOH A 16 616 135 HOH HOH . Y 7 HOH A 17 617 23 HOH HOH . Y 7 HOH A 18 618 44 HOH HOH . Y 7 HOH A 19 619 180 HOH HOH . Y 7 HOH A 20 620 142 HOH HOH . Y 7 HOH A 21 621 37 HOH HOH . Y 7 HOH A 22 622 181 HOH HOH . Y 7 HOH A 23 623 174 HOH HOH . Y 7 HOH A 24 624 149 HOH HOH . Y 7 HOH A 25 625 4 HOH HOH . Y 7 HOH A 26 626 185 HOH HOH . Y 7 HOH A 27 627 36 HOH HOH . Y 7 HOH A 28 628 49 HOH HOH . Y 7 HOH A 29 629 202 HOH HOH . Y 7 HOH A 30 630 155 HOH HOH . Y 7 HOH A 31 631 167 HOH HOH . Y 7 HOH A 32 632 71 HOH HOH . Y 7 HOH A 33 633 54 HOH HOH . Y 7 HOH A 34 634 116 HOH HOH . Y 7 HOH A 35 635 82 HOH HOH . Y 7 HOH A 36 636 61 HOH HOH . Y 7 HOH A 37 637 177 HOH HOH . Y 7 HOH A 38 638 35 HOH HOH . Y 7 HOH A 39 639 140 HOH HOH . Y 7 HOH A 40 640 95 HOH HOH . Y 7 HOH A 41 641 136 HOH HOH . Y 7 HOH A 42 642 188 HOH HOH . Y 7 HOH A 43 643 24 HOH HOH . Y 7 HOH A 44 644 73 HOH HOH . Y 7 HOH A 45 645 156 HOH HOH . Y 7 HOH A 46 646 182 HOH HOH . Y 7 HOH A 47 647 69 HOH HOH . Y 7 HOH A 48 648 161 HOH HOH . Y 7 HOH A 49 649 164 HOH HOH . Y 7 HOH A 50 650 17 HOH HOH . Y 7 HOH A 51 651 66 HOH HOH . Y 7 HOH A 52 652 65 HOH HOH . Y 7 HOH A 53 653 198 HOH HOH . Y 7 HOH A 54 654 3 HOH HOH . Y 7 HOH A 55 655 98 HOH HOH . Y 7 HOH A 56 656 160 HOH HOH . Y 7 HOH A 57 657 34 HOH HOH . Y 7 HOH A 58 658 25 HOH HOH . Y 7 HOH A 59 659 94 HOH HOH . Y 7 HOH A 60 660 60 HOH HOH . Y 7 HOH A 61 661 58 HOH HOH . Y 7 HOH A 62 662 2 HOH HOH . Y 7 HOH A 63 663 46 HOH HOH . Y 7 HOH A 64 664 84 HOH HOH . Y 7 HOH A 65 665 107 HOH HOH . Y 7 HOH A 66 666 63 HOH HOH . Y 7 HOH A 67 667 8 HOH HOH . Y 7 HOH A 68 668 41 HOH HOH . Y 7 HOH A 69 669 203 HOH HOH . Y 7 HOH A 70 670 87 HOH HOH . Y 7 HOH A 71 671 32 HOH HOH . Y 7 HOH A 72 672 40 HOH HOH . Y 7 HOH A 73 673 72 HOH HOH . Y 7 HOH A 74 674 93 HOH HOH . Y 7 HOH A 75 675 20 HOH HOH . Y 7 HOH A 76 676 131 HOH HOH . Y 7 HOH A 77 677 158 HOH HOH . Y 7 HOH A 78 678 56 HOH HOH . Y 7 HOH A 79 679 120 HOH HOH . Y 7 HOH A 80 680 168 HOH HOH . Y 7 HOH A 81 681 122 HOH HOH . Y 7 HOH A 82 682 78 HOH HOH . Y 7 HOH A 83 683 204 HOH HOH . Y 7 HOH A 84 684 123 HOH HOH . Y 7 HOH A 85 685 109 HOH HOH . Y 7 HOH A 86 686 113 HOH HOH . Y 7 HOH A 87 687 110 HOH HOH . Y 7 HOH A 88 688 118 HOH HOH . Y 7 HOH A 89 689 184 HOH HOH . Y 7 HOH A 90 690 115 HOH HOH . Y 7 HOH A 91 691 117 HOH HOH . Y 7 HOH A 92 692 100 HOH HOH . Y 7 HOH A 93 693 121 HOH HOH . Y 7 HOH A 94 694 178 HOH HOH . Y 7 HOH A 95 695 111 HOH HOH . Y 7 HOH A 96 696 157 HOH HOH . Y 7 HOH A 97 697 186 HOH HOH . Y 7 HOH A 98 698 171 HOH HOH . Y 7 HOH A 99 699 173 HOH HOH . Z 7 HOH B 1 601 1 HOH HOH . Z 7 HOH B 2 602 67 HOH HOH . Z 7 HOH B 3 603 183 HOH HOH . Z 7 HOH B 4 604 192 HOH HOH . Z 7 HOH B 5 605 102 HOH HOH . Z 7 HOH B 6 606 47 HOH HOH . Z 7 HOH B 7 607 96 HOH HOH . Z 7 HOH B 8 608 201 HOH HOH . Z 7 HOH B 9 609 134 HOH HOH . Z 7 HOH B 10 610 144 HOH HOH . Z 7 HOH B 11 611 75 HOH HOH . Z 7 HOH B 12 612 193 HOH HOH . Z 7 HOH B 13 613 89 HOH HOH . Z 7 HOH B 14 614 5 HOH HOH . Z 7 HOH B 15 615 145 HOH HOH . Z 7 HOH B 16 616 137 HOH HOH . Z 7 HOH B 17 617 39 HOH HOH . Z 7 HOH B 18 618 147 HOH HOH . Z 7 HOH B 19 619 14 HOH HOH . Z 7 HOH B 20 620 22 HOH HOH . Z 7 HOH B 21 621 146 HOH HOH . Z 7 HOH B 22 622 31 HOH HOH . Z 7 HOH B 23 623 7 HOH HOH . Z 7 HOH B 24 624 124 HOH HOH . Z 7 HOH B 25 625 99 HOH HOH . Z 7 HOH B 26 626 197 HOH HOH . Z 7 HOH B 27 627 196 HOH HOH . Z 7 HOH B 28 628 139 HOH HOH . Z 7 HOH B 29 629 172 HOH HOH . Z 7 HOH B 30 630 138 HOH HOH . Z 7 HOH B 31 631 141 HOH HOH . Z 7 HOH B 32 632 90 HOH HOH . Z 7 HOH B 33 633 153 HOH HOH . Z 7 HOH B 34 634 165 HOH HOH . Z 7 HOH B 35 635 169 HOH HOH . Z 7 HOH B 36 636 27 HOH HOH . Z 7 HOH B 37 637 53 HOH HOH . Z 7 HOH B 38 638 26 HOH HOH . Z 7 HOH B 39 639 154 HOH HOH . Z 7 HOH B 40 640 81 HOH HOH . Z 7 HOH B 41 641 163 HOH HOH . Z 7 HOH B 42 642 143 HOH HOH . Z 7 HOH B 43 643 150 HOH HOH . Z 7 HOH B 44 644 9 HOH HOH . Z 7 HOH B 45 645 162 HOH HOH . Z 7 HOH B 46 646 38 HOH HOH . Z 7 HOH B 47 647 52 HOH HOH . Z 7 HOH B 48 648 16 HOH HOH . Z 7 HOH B 49 649 59 HOH HOH . Z 7 HOH B 50 650 151 HOH HOH . Z 7 HOH B 51 651 101 HOH HOH . Z 7 HOH B 52 652 152 HOH HOH . Z 7 HOH B 53 653 80 HOH HOH . Z 7 HOH B 54 654 62 HOH HOH . Z 7 HOH B 55 655 74 HOH HOH . Z 7 HOH B 56 656 125 HOH HOH . Z 7 HOH B 57 657 148 HOH HOH . Z 7 HOH B 58 658 77 HOH HOH . Z 7 HOH B 59 659 11 HOH HOH . Z 7 HOH B 60 660 76 HOH HOH . Z 7 HOH B 61 661 30 HOH HOH . Z 7 HOH B 62 662 92 HOH HOH . Z 7 HOH B 63 663 13 HOH HOH . Z 7 HOH B 64 664 91 HOH HOH . Z 7 HOH B 65 665 88 HOH HOH . Z 7 HOH B 66 666 189 HOH HOH . Z 7 HOH B 67 667 85 HOH HOH . Z 7 HOH B 68 668 106 HOH HOH . Z 7 HOH B 69 669 133 HOH HOH . Z 7 HOH B 70 670 50 HOH HOH . Z 7 HOH B 71 671 83 HOH HOH . Z 7 HOH B 72 672 57 HOH HOH . Z 7 HOH B 73 673 48 HOH HOH . Z 7 HOH B 74 674 19 HOH HOH . Z 7 HOH B 75 675 68 HOH HOH . Z 7 HOH B 76 676 6 HOH HOH . Z 7 HOH B 77 677 51 HOH HOH . Z 7 HOH B 78 678 104 HOH HOH . Z 7 HOH B 79 679 18 HOH HOH . Z 7 HOH B 80 680 114 HOH HOH . Z 7 HOH B 81 681 15 HOH HOH . Z 7 HOH B 82 682 126 HOH HOH . Z 7 HOH B 83 683 105 HOH HOH . Z 7 HOH B 84 684 103 HOH HOH . Z 7 HOH B 85 685 108 HOH HOH . Z 7 HOH B 86 686 170 HOH HOH . Z 7 HOH B 87 687 166 HOH HOH . Z 7 HOH B 88 688 190 HOH HOH . Z 7 HOH B 89 689 176 HOH HOH . Z 7 HOH B 90 690 175 HOH HOH . Z 7 HOH B 91 691 112 HOH HOH . Z 7 HOH B 92 692 86 HOH HOH . Z 7 HOH B 93 693 119 HOH HOH . Z 7 HOH B 94 694 79 HOH HOH . Z 7 HOH B 95 695 132 HOH HOH . Z 7 HOH B 96 696 70 HOH HOH . Z 7 HOH B 97 697 97 HOH HOH . Z 7 HOH B 98 698 191 HOH HOH . Z 7 HOH B 99 699 195 HOH HOH . Z 7 HOH B 100 700 128 HOH HOH . Z 7 HOH B 101 701 127 HOH HOH . Z 7 HOH B 102 702 159 HOH HOH . Z 7 HOH B 103 703 187 HOH HOH . Z 7 HOH B 104 704 130 HOH HOH . Z 7 HOH B 105 705 194 HOH HOH . Z 7 HOH B 106 706 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . V 4 6.432 -19.38 42.118 1 103.28 0 S DMS 508 B 1 HETATM 2 O O DMS . . . V 4 5.277 -20.289 41.835 1 97 0 O DMS 508 B 1 HETATM 3 C C1 DMS . . . V 4 6.757 -19.594 43.838 1 78.53 0 C1 DMS 508 B 1 HETATM 4 C C2 DMS . . . V 4 7.871 -20.221 41.5 1 99.93 0 C2 DMS 508 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 4 #