data_8QES # _model_server_result.job_id Y26EBHpY0NxUEAehiISMkA _model_server_result.datetime_utc '2024-11-23 09:03:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qes # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 8QES # _exptl.entry_id 8QES _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 123.109 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICOTINIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.73 _cell.angle_gamma 90 _cell.entry_id 8QES _cell.length_a 71.45 _cell.length_b 57.96 _cell.length_c 116.49 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QES _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,I,J,M,O 1 1 B,G,H,N 2 1 D,K,L,P 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y+1/2,-z+1 -1 0 0 0 1 0 0 0 -1 43.801469 28.98 113.161296 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PHE 127 A PHE 123 1_555 A N HOX 128 A HOX 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale2 A C HOX 128 A HOX 124 1_555 A N ALA 129 A ALA 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 B C PHE 127 B PHE 123 1_555 B N HOX 128 B HOX 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale4 B C HOX 128 B HOX 124 1_555 B N ALA 129 B ALA 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale5 C C PHE 127 C PHE 123 1_555 C N HOX 128 C HOX 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale6 C C HOX 128 C HOX 124 1_555 C N ALA 129 C ALA 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale7 D C PHE 127 D PHE 123 1_555 D N HOX 128 D HOX 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale8 D C HOX 128 D HOX 124 1_555 D N ALA 129 D ALA 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? # _chem_comp.formula 'C6 H5 N O2' _chem_comp.formula_weight 123.109 _chem_comp.id NIO _chem_comp.mon_nstd_flag . _chem_comp.name 'NICOTINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C1 NIO doub 316 n y N C5 NIO sing 317 n y C1 C2 NIO sing 318 n y C1 H1 NIO sing 319 n n C2 C3 NIO doub 320 n y C2 C6 NIO sing 321 n n C3 C4 NIO sing 322 n y C3 H3 NIO sing 323 n n C4 C5 NIO doub 324 n y C4 H4 NIO sing 325 n n C5 H5 NIO sing 326 n n C6 O1 NIO doub 327 n n C6 O2 NIO sing 328 n n O2 HO2 NIO sing 329 n n # _atom_sites.entry_id 8QES _atom_sites.fract_transf_matrix[1][1] 0.013996 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00342 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017253 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008837 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FMN A 1 301 1 FMN FMN . F 3 NIO A 1 302 1 NIO NIO . G 2 FMN B 1 301 1 FMN FMN . H 3 NIO B 1 302 1 NIO NIO . I 2 FMN C 1 301 1 FMN FMN . J 3 NIO C 1 302 1 NIO NIO . K 2 FMN D 1 301 1 FMN FMN . L 3 NIO D 1 302 1 NIO NIO . M 4 HOH A 1 401 158 HOH HOH . M 4 HOH A 2 402 171 HOH HOH . M 4 HOH A 3 403 154 HOH HOH . M 4 HOH A 4 404 164 HOH HOH . M 4 HOH A 5 405 33 HOH HOH . M 4 HOH A 6 406 44 HOH HOH . M 4 HOH A 7 407 30 HOH HOH . M 4 HOH A 8 408 162 HOH HOH . M 4 HOH A 9 409 95 HOH HOH . M 4 HOH A 10 410 102 HOH HOH . M 4 HOH A 11 411 7 HOH HOH . M 4 HOH A 12 412 32 HOH HOH . M 4 HOH A 13 413 96 HOH HOH . M 4 HOH A 14 414 19 HOH HOH . M 4 HOH A 15 415 29 HOH HOH . M 4 HOH A 16 416 37 HOH HOH . M 4 HOH A 17 417 157 HOH HOH . M 4 HOH A 18 418 25 HOH HOH . M 4 HOH A 19 419 94 HOH HOH . M 4 HOH A 20 420 152 HOH HOH . M 4 HOH A 21 421 97 HOH HOH . M 4 HOH A 22 422 166 HOH HOH . M 4 HOH A 23 423 31 HOH HOH . M 4 HOH A 24 424 92 HOH HOH . M 4 HOH A 25 425 67 HOH HOH . M 4 HOH A 26 426 167 HOH HOH . M 4 HOH A 27 427 21 HOH HOH . M 4 HOH A 28 428 145 HOH HOH . M 4 HOH A 29 429 28 HOH HOH . M 4 HOH A 30 430 104 HOH HOH . M 4 HOH A 31 431 146 HOH HOH . M 4 HOH A 32 432 168 HOH HOH . M 4 HOH A 33 433 239 HOH HOH . M 4 HOH A 34 434 43 HOH HOH . M 4 HOH A 35 435 36 HOH HOH . M 4 HOH A 36 436 93 HOH HOH . M 4 HOH A 37 437 26 HOH HOH . M 4 HOH A 38 438 23 HOH HOH . M 4 HOH A 39 439 35 HOH HOH . M 4 HOH A 40 440 34 HOH HOH . M 4 HOH A 41 441 17 HOH HOH . M 4 HOH A 42 442 39 HOH HOH . M 4 HOH A 43 443 240 HOH HOH . M 4 HOH A 44 444 103 HOH HOH . M 4 HOH A 45 445 98 HOH HOH . M 4 HOH A 46 446 170 HOH HOH . M 4 HOH A 47 447 91 HOH HOH . M 4 HOH A 48 448 89 HOH HOH . M 4 HOH A 49 449 88 HOH HOH . M 4 HOH A 50 450 215 HOH HOH . M 4 HOH A 51 451 42 HOH HOH . M 4 HOH A 52 452 13 HOH HOH . M 4 HOH A 53 453 85 HOH HOH . M 4 HOH A 54 454 124 HOH HOH . M 4 HOH A 55 455 40 HOH HOH . M 4 HOH A 56 456 227 HOH HOH . M 4 HOH A 57 457 84 HOH HOH . M 4 HOH A 58 458 90 HOH HOH . M 4 HOH A 59 459 38 HOH HOH . M 4 HOH A 60 460 24 HOH HOH . M 4 HOH A 61 461 209 HOH HOH . M 4 HOH A 62 462 226 HOH HOH . M 4 HOH A 63 463 165 HOH HOH . M 4 HOH A 64 464 161 HOH HOH . M 4 HOH A 65 465 225 HOH HOH . M 4 HOH A 66 466 163 HOH HOH . M 4 HOH A 67 467 101 HOH HOH . N 4 HOH B 1 401 47 HOH HOH . N 4 HOH B 2 402 192 HOH HOH . N 4 HOH B 3 403 113 HOH HOH . N 4 HOH B 4 404 111 HOH HOH . N 4 HOH B 5 405 179 HOH HOH . N 4 HOH B 6 406 5 HOH HOH . N 4 HOH B 7 407 20 HOH HOH . N 4 HOH B 8 408 183 HOH HOH . N 4 HOH B 9 409 15 HOH HOH . N 4 HOH B 10 410 57 HOH HOH . N 4 HOH B 11 411 155 HOH HOH . N 4 HOH B 12 412 193 HOH HOH . N 4 HOH B 13 413 79 HOH HOH . N 4 HOH B 14 414 120 HOH HOH . N 4 HOH B 15 415 182 HOH HOH . N 4 HOH B 16 416 100 HOH HOH . N 4 HOH B 17 417 148 HOH HOH . N 4 HOH B 18 418 107 HOH HOH . N 4 HOH B 19 419 53 HOH HOH . N 4 HOH B 20 420 112 HOH HOH . N 4 HOH B 21 421 151 HOH HOH . N 4 HOH B 22 422 56 HOH HOH . N 4 HOH B 23 423 150 HOH HOH . N 4 HOH B 24 424 187 HOH HOH . N 4 HOH B 25 425 4 HOH HOH . N 4 HOH B 26 426 27 HOH HOH . N 4 HOH B 27 427 177 HOH HOH . N 4 HOH B 28 428 190 HOH HOH . N 4 HOH B 29 429 51 HOH HOH . N 4 HOH B 30 430 54 HOH HOH . N 4 HOH B 31 431 230 HOH HOH . N 4 HOH B 32 432 48 HOH HOH . N 4 HOH B 33 433 180 HOH HOH . N 4 HOH B 34 434 178 HOH HOH . N 4 HOH B 35 435 87 HOH HOH . N 4 HOH B 36 436 243 HOH HOH . N 4 HOH B 37 437 6 HOH HOH . N 4 HOH B 38 438 109 HOH HOH . N 4 HOH B 39 439 118 HOH HOH . N 4 HOH B 40 440 121 HOH HOH . N 4 HOH B 41 441 108 HOH HOH . N 4 HOH B 42 442 49 HOH HOH . N 4 HOH B 43 443 115 HOH HOH . N 4 HOH B 44 444 194 HOH HOH . N 4 HOH B 45 445 11 HOH HOH . N 4 HOH B 46 446 116 HOH HOH . N 4 HOH B 47 447 110 HOH HOH . N 4 HOH B 48 448 188 HOH HOH . N 4 HOH B 49 449 228 HOH HOH . N 4 HOH B 50 450 181 HOH HOH . N 4 HOH B 51 451 119 HOH HOH . N 4 HOH B 52 452 114 HOH HOH . N 4 HOH B 53 453 160 HOH HOH . N 4 HOH B 54 454 223 HOH HOH . N 4 HOH B 55 455 159 HOH HOH . N 4 HOH B 56 456 189 HOH HOH . N 4 HOH B 57 457 106 HOH HOH . N 4 HOH B 58 458 58 HOH HOH . N 4 HOH B 59 459 185 HOH HOH . N 4 HOH B 60 460 55 HOH HOH . N 4 HOH B 61 461 117 HOH HOH . N 4 HOH B 62 462 238 HOH HOH . N 4 HOH B 63 463 127 HOH HOH . N 4 HOH B 64 464 175 HOH HOH . N 4 HOH B 65 465 186 HOH HOH . O 4 HOH C 1 401 125 HOH HOH . O 4 HOH C 2 402 86 HOH HOH . O 4 HOH C 3 403 61 HOH HOH . O 4 HOH C 4 404 46 HOH HOH . O 4 HOH C 5 405 212 HOH HOH . O 4 HOH C 6 406 122 HOH HOH . O 4 HOH C 7 407 244 HOH HOH . O 4 HOH C 8 408 45 HOH HOH . O 4 HOH C 9 409 173 HOH HOH . O 4 HOH C 10 410 2 HOH HOH . O 4 HOH C 11 411 197 HOH HOH . O 4 HOH C 12 412 208 HOH HOH . O 4 HOH C 13 413 200 HOH HOH . O 4 HOH C 14 414 63 HOH HOH . O 4 HOH C 15 415 62 HOH HOH . O 4 HOH C 16 416 195 HOH HOH . O 4 HOH C 17 417 60 HOH HOH . O 4 HOH C 18 418 206 HOH HOH . O 4 HOH C 19 419 64 HOH HOH . O 4 HOH C 20 420 204 HOH HOH . O 4 HOH C 21 421 153 HOH HOH . O 4 HOH C 22 422 149 HOH HOH . O 4 HOH C 23 423 16 HOH HOH . O 4 HOH C 24 424 196 HOH HOH . O 4 HOH C 25 425 214 HOH HOH . O 4 HOH C 26 426 65 HOH HOH . O 4 HOH C 27 427 172 HOH HOH . O 4 HOH C 28 428 216 HOH HOH . O 4 HOH C 29 429 222 HOH HOH . O 4 HOH C 30 430 198 HOH HOH . O 4 HOH C 31 431 218 HOH HOH . O 4 HOH C 32 432 217 HOH HOH . O 4 HOH C 33 433 1 HOH HOH . O 4 HOH C 34 434 8 HOH HOH . O 4 HOH C 35 435 144 HOH HOH . O 4 HOH C 36 436 66 HOH HOH . O 4 HOH C 37 437 211 HOH HOH . O 4 HOH C 38 438 169 HOH HOH . O 4 HOH C 39 439 242 HOH HOH . O 4 HOH C 40 440 126 HOH HOH . O 4 HOH C 41 441 199 HOH HOH . O 4 HOH C 42 442 22 HOH HOH . O 4 HOH C 43 443 18 HOH HOH . O 4 HOH C 44 444 219 HOH HOH . O 4 HOH C 45 445 207 HOH HOH . O 4 HOH C 46 446 201 HOH HOH . O 4 HOH C 47 447 83 HOH HOH . O 4 HOH C 48 448 224 HOH HOH . O 4 HOH C 49 449 123 HOH HOH . O 4 HOH C 50 450 213 HOH HOH . O 4 HOH C 51 451 59 HOH HOH . O 4 HOH C 52 452 105 HOH HOH . O 4 HOH C 53 453 41 HOH HOH . O 4 HOH C 54 454 203 HOH HOH . O 4 HOH C 55 455 210 HOH HOH . O 4 HOH C 56 456 202 HOH HOH . O 4 HOH C 57 457 205 HOH HOH . P 4 HOH D 1 401 72 HOH HOH . P 4 HOH D 2 402 220 HOH HOH . P 4 HOH D 3 403 50 HOH HOH . P 4 HOH D 4 404 140 HOH HOH . P 4 HOH D 5 405 237 HOH HOH . P 4 HOH D 6 406 234 HOH HOH . P 4 HOH D 7 407 73 HOH HOH . P 4 HOH D 8 408 232 HOH HOH . P 4 HOH D 9 409 139 HOH HOH . P 4 HOH D 10 410 133 HOH HOH . P 4 HOH D 11 411 231 HOH HOH . P 4 HOH D 12 412 156 HOH HOH . P 4 HOH D 13 413 71 HOH HOH . P 4 HOH D 14 414 69 HOH HOH . P 4 HOH D 15 415 221 HOH HOH . P 4 HOH D 16 416 143 HOH HOH . P 4 HOH D 17 417 235 HOH HOH . P 4 HOH D 18 418 75 HOH HOH . P 4 HOH D 19 419 76 HOH HOH . P 4 HOH D 20 420 137 HOH HOH . P 4 HOH D 21 421 128 HOH HOH . P 4 HOH D 22 422 176 HOH HOH . P 4 HOH D 23 423 147 HOH HOH . P 4 HOH D 24 424 241 HOH HOH . P 4 HOH D 25 425 131 HOH HOH . P 4 HOH D 26 426 74 HOH HOH . P 4 HOH D 27 427 245 HOH HOH . P 4 HOH D 28 428 52 HOH HOH . P 4 HOH D 29 429 130 HOH HOH . P 4 HOH D 30 430 78 HOH HOH . P 4 HOH D 31 431 236 HOH HOH . P 4 HOH D 32 432 184 HOH HOH . P 4 HOH D 33 433 81 HOH HOH . P 4 HOH D 34 434 14 HOH HOH . P 4 HOH D 35 435 141 HOH HOH . P 4 HOH D 36 436 68 HOH HOH . P 4 HOH D 37 437 70 HOH HOH . P 4 HOH D 38 438 80 HOH HOH . P 4 HOH D 39 439 142 HOH HOH . P 4 HOH D 40 440 136 HOH HOH . P 4 HOH D 41 441 12 HOH HOH . P 4 HOH D 42 442 174 HOH HOH . P 4 HOH D 43 443 10 HOH HOH . P 4 HOH D 44 444 191 HOH HOH . P 4 HOH D 45 445 9 HOH HOH . P 4 HOH D 46 446 229 HOH HOH . P 4 HOH D 47 447 82 HOH HOH . P 4 HOH D 48 448 3 HOH HOH . P 4 HOH D 49 449 132 HOH HOH . P 4 HOH D 50 450 77 HOH HOH . P 4 HOH D 51 451 99 HOH HOH . P 4 HOH D 52 452 233 HOH HOH . P 4 HOH D 53 453 135 HOH HOH . P 4 HOH D 54 454 129 HOH HOH . P 4 HOH D 55 455 134 HOH HOH . P 4 HOH D 56 456 138 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NIO . . . F 3 20.933 -13.066 -10.556 1 20.33 ? N NIO 302 A 1 HETATM 2 C C1 NIO . . . F 3 19.988 -13.854 -10.043 1 20.97 ? C1 NIO 302 A 1 HETATM 3 C C2 NIO . . . F 3 19.601 -13.797 -8.717 1 22.16 ? C2 NIO 302 A 1 HETATM 4 C C3 NIO . . . F 3 20.249 -12.91 -7.895 1 24 ? C3 NIO 302 A 1 HETATM 5 C C4 NIO . . . F 3 21.199 -12.066 -8.439 1 25.21 ? C4 NIO 302 A 1 HETATM 6 C C5 NIO . . . F 3 21.472 -12.159 -9.778 1 19.81 ? C5 NIO 302 A 1 HETATM 7 C C6 NIO . . . F 3 18.545 -14.688 -8.208 1 19.83 ? C6 NIO 302 A 1 HETATM 8 O O1 NIO . . . F 3 18.012 -15.441 -9.02 1 22.69 ? O1 NIO 302 A 1 HETATM 9 O O2 NIO . . . F 3 18.209 -14.58 -7.055 1 14.88 ? O2 NIO 302 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 63 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 9 #