data_8QFG # _model_server_result.job_id 0u0_dud6UTA3jWH9ndVy6w _model_server_result.datetime_utc '2025-07-02 19:08:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qfg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8QFG # _exptl.entry_id 8QFG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8QFG _cell.length_a 52.511 _cell.length_b 141.425 _cell.length_c 104.732 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QFG _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? -1 0 0 0 1 0 0 0 -1 52.51 0 -52.365 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 156 A ASP 156 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc2 A OD2 ASP 156 A ASP 156 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc3 A O ILE 157 A ILE 157 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc4 A OD2 ASP 200 A ASP 200 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc5 A OD1 ASP 200 A ASP 200 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc6 C O3G ATP . A ATP 402 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc7 C O2B ATP . A ATP 402 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc8 C O2A ATP . A ATP 402 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc9 C O2A ATP . A ATP 402 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc10 E MG MG . A MG 404 1_555 F O HOH . A HOH 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc11 E MG MG . A MG 404 1_555 F O HOH . A HOH 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 132 n n N1 C10 FMN doub 133 n n C2 O2 FMN doub 134 n n C2 N3 FMN sing 135 n n N3 C4 FMN sing 136 n n N3 HN3 FMN sing 137 n n C4 O4 FMN doub 138 n n C4 C4A FMN sing 139 n n C4A N5 FMN doub 140 n n C4A C10 FMN sing 141 n n N5 C5A FMN sing 142 n n C5A C6 FMN doub 143 n y C5A C9A FMN sing 144 n y C6 C7 FMN sing 145 n y C6 H6 FMN sing 146 n n C7 C7M FMN sing 147 n n C7 C8 FMN doub 148 n y C7M HM71 FMN sing 149 n n C7M HM72 FMN sing 150 n n C7M HM73 FMN sing 151 n n C8 C8M FMN sing 152 n n C8 C9 FMN sing 153 n y C8M HM81 FMN sing 154 n n C8M HM82 FMN sing 155 n n C8M HM83 FMN sing 156 n n C9 C9A FMN doub 157 n y C9 H9 FMN sing 158 n n C9A N10 FMN sing 159 n n N10 C10 FMN sing 160 n n N10 C1' FMN sing 161 n n C1' C2' FMN sing 162 n n C1' "H1'1" FMN sing 163 n n C1' "H1'2" FMN sing 164 n n C2' O2' FMN sing 165 n n C2' C3' FMN sing 166 n n C2' H2' FMN sing 167 n n O2' HO2' FMN sing 168 n n C3' O3' FMN sing 169 n n C3' C4' FMN sing 170 n n C3' H3' FMN sing 171 n n O3' HO3' FMN sing 172 n n C4' O4' FMN sing 173 n n C4' C5' FMN sing 174 n n C4' H4' FMN sing 175 n n O4' HO4' FMN sing 176 n n C5' O5' FMN sing 177 n n C5' "H5'1" FMN sing 178 n n C5' "H5'2" FMN sing 179 n n O5' P FMN sing 180 n n P O1P FMN doub 181 n n P O2P FMN sing 182 n n P O3P FMN sing 183 n n O2P HOP2 FMN sing 184 n n O3P HOP3 FMN sing 185 n n # _atom_sites.entry_id 8QFG _atom_sites.fract_transf_matrix[1][1] 0.019044 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007071 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009548 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 401 1 FMN FMN . C 3 ATP A 1 402 2 ATP ATP . D 4 MG A 1 403 3 MG MG . E 4 MG A 1 404 4 MG MG . F 5 HOH A 1 501 95 HOH HOH . F 5 HOH A 2 502 61 HOH HOH . F 5 HOH A 3 503 85 HOH HOH . F 5 HOH A 4 504 57 HOH HOH . F 5 HOH A 5 505 100 HOH HOH . F 5 HOH A 6 506 87 HOH HOH . F 5 HOH A 7 507 2 HOH HOH . F 5 HOH A 8 508 62 HOH HOH . F 5 HOH A 9 509 97 HOH HOH . F 5 HOH A 10 510 3 HOH HOH . F 5 HOH A 11 511 7 HOH HOH . F 5 HOH A 12 512 65 HOH HOH . F 5 HOH A 13 513 104 HOH HOH . F 5 HOH A 14 514 16 HOH HOH . F 5 HOH A 15 515 38 HOH HOH . F 5 HOH A 16 516 37 HOH HOH . F 5 HOH A 17 517 63 HOH HOH . F 5 HOH A 18 518 76 HOH HOH . F 5 HOH A 19 519 42 HOH HOH . F 5 HOH A 20 520 52 HOH HOH . F 5 HOH A 21 521 24 HOH HOH . F 5 HOH A 22 522 49 HOH HOH . F 5 HOH A 23 523 53 HOH HOH . F 5 HOH A 24 524 11 HOH HOH . F 5 HOH A 25 525 84 HOH HOH . F 5 HOH A 26 526 10 HOH HOH . F 5 HOH A 27 527 5 HOH HOH . F 5 HOH A 28 528 64 HOH HOH . F 5 HOH A 29 529 34 HOH HOH . F 5 HOH A 30 530 6 HOH HOH . F 5 HOH A 31 531 77 HOH HOH . F 5 HOH A 32 532 13 HOH HOH . F 5 HOH A 33 533 31 HOH HOH . F 5 HOH A 34 534 55 HOH HOH . F 5 HOH A 35 535 21 HOH HOH . F 5 HOH A 36 536 1 HOH HOH . F 5 HOH A 37 537 48 HOH HOH . F 5 HOH A 38 538 80 HOH HOH . F 5 HOH A 39 539 32 HOH HOH . F 5 HOH A 40 540 29 HOH HOH . F 5 HOH A 41 541 82 HOH HOH . F 5 HOH A 42 542 56 HOH HOH . F 5 HOH A 43 543 26 HOH HOH . F 5 HOH A 44 544 22 HOH HOH . F 5 HOH A 45 545 14 HOH HOH . F 5 HOH A 46 546 8 HOH HOH . F 5 HOH A 47 547 12 HOH HOH . F 5 HOH A 48 548 36 HOH HOH . F 5 HOH A 49 549 44 HOH HOH . F 5 HOH A 50 550 19 HOH HOH . F 5 HOH A 51 551 47 HOH HOH . F 5 HOH A 52 552 46 HOH HOH . F 5 HOH A 53 553 33 HOH HOH . F 5 HOH A 54 554 101 HOH HOH . F 5 HOH A 55 555 15 HOH HOH . F 5 HOH A 56 556 41 HOH HOH . F 5 HOH A 57 557 20 HOH HOH . F 5 HOH A 58 558 73 HOH HOH . F 5 HOH A 59 559 9 HOH HOH . F 5 HOH A 60 560 4 HOH HOH . F 5 HOH A 61 561 43 HOH HOH . F 5 HOH A 62 562 23 HOH HOH . F 5 HOH A 63 563 67 HOH HOH . F 5 HOH A 64 564 66 HOH HOH . F 5 HOH A 65 565 28 HOH HOH . F 5 HOH A 66 566 27 HOH HOH . F 5 HOH A 67 567 54 HOH HOH . F 5 HOH A 68 568 18 HOH HOH . F 5 HOH A 69 569 50 HOH HOH . F 5 HOH A 70 570 75 HOH HOH . F 5 HOH A 71 571 78 HOH HOH . F 5 HOH A 72 572 71 HOH HOH . F 5 HOH A 73 573 88 HOH HOH . F 5 HOH A 74 574 86 HOH HOH . F 5 HOH A 75 575 68 HOH HOH . F 5 HOH A 76 576 70 HOH HOH . F 5 HOH A 77 577 92 HOH HOH . F 5 HOH A 78 578 81 HOH HOH . F 5 HOH A 79 579 35 HOH HOH . F 5 HOH A 80 580 107 HOH HOH . F 5 HOH A 81 581 51 HOH HOH . F 5 HOH A 82 582 91 HOH HOH . F 5 HOH A 83 583 98 HOH HOH . F 5 HOH A 84 584 17 HOH HOH . F 5 HOH A 85 585 30 HOH HOH . F 5 HOH A 86 586 96 HOH HOH . F 5 HOH A 87 587 103 HOH HOH . F 5 HOH A 88 588 93 HOH HOH . F 5 HOH A 89 589 60 HOH HOH . F 5 HOH A 90 590 39 HOH HOH . F 5 HOH A 91 591 58 HOH HOH . F 5 HOH A 92 592 90 HOH HOH . F 5 HOH A 93 593 79 HOH HOH . F 5 HOH A 94 594 40 HOH HOH . F 5 HOH A 95 595 102 HOH HOH . F 5 HOH A 96 596 74 HOH HOH . F 5 HOH A 97 597 69 HOH HOH . F 5 HOH A 98 598 25 HOH HOH . F 5 HOH A 99 599 72 HOH HOH . F 5 HOH A 100 600 105 HOH HOH . F 5 HOH A 101 601 45 HOH HOH . F 5 HOH A 102 602 59 HOH HOH . F 5 HOH A 103 603 89 HOH HOH . F 5 HOH A 104 604 83 HOH HOH . F 5 HOH A 105 605 94 HOH HOH . F 5 HOH A 106 606 106 HOH HOH . F 5 HOH A 107 607 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 22.48 -10.871 -3.474 1 72.44 ? N1 FMN 401 A 1 HETATM 2 C C2 FMN . . . B 2 21.106 -11.353 -3.527 1 67.1 ? C2 FMN 401 A 1 HETATM 3 O O2 FMN . . . B 2 20.535 -11.591 -2.547 1 74.69 ? O2 FMN 401 A 1 HETATM 4 N N3 FMN . . . B 2 20.466 -11.557 -4.823 1 58.68 ? N3 FMN 401 A 1 HETATM 5 C C4 FMN . . . B 2 21.22 -11.254 -6.009 1 67.66 ? C4 FMN 401 A 1 HETATM 6 O O4 FMN . . . B 2 20.704 -11.401 -7.021 1 62 ? O4 FMN 401 A 1 HETATM 7 C C4A FMN . . . B 2 22.628 -10.742 -5.956 1 61.05 ? C4A FMN 401 A 1 HETATM 8 N N5 FMN . . . B 2 23.364 -10.443 -7.16 1 58.18 ? N5 FMN 401 A 1 HETATM 9 C C5A FMN . . . B 2 24.76 -9.942 -7.054 1 69.06 ? C5A FMN 401 A 1 HETATM 10 C C6 FMN . . . B 2 25.465 -9.659 -8.221 1 61.07 ? C6 FMN 401 A 1 HETATM 11 C C7 FMN . . . B 2 26.769 -9.185 -8.155 1 69.56 ? C7 FMN 401 A 1 HETATM 12 C C7M FMN . . . B 2 27.25 -8.981 -9.584 1 60.69 ? C7M FMN 401 A 1 HETATM 13 C C8 FMN . . . B 2 27.367 -8.999 -6.911 1 77.16 ? C8 FMN 401 A 1 HETATM 14 C C8M FMN . . . B 2 28.803 -8.488 -6.904 1 88.77 ? C8M FMN 401 A 1 HETATM 15 C C9 FMN . . . B 2 26.671 -9.279 -5.755 1 59.11 ? C9 FMN 401 A 1 HETATM 16 C C9A FMN . . . B 2 25.36 -9.753 -5.798 1 56.45 ? C9A FMN 401 A 1 HETATM 17 N N10 FMN . . . B 2 24.584 -10.06 -4.556 1 69.65 ? N10 FMN 401 A 1 HETATM 18 C C10 FMN . . . B 2 23.236 -10.555 -4.676 1 57.95 ? C10 FMN 401 A 1 HETATM 19 C C1' FMN . . . B 2 25.105 -9.921 -3.207 1 57.77 ? C1' FMN 401 A 1 HETATM 20 C C2' FMN . . . B 2 24.381 -8.803 -2.44 1 62 ? C2' FMN 401 A 1 HETATM 21 O O2' FMN . . . B 2 24.884 -7.567 -2.832 1 50.58 ? O2' FMN 401 A 1 HETATM 22 C C3' FMN . . . B 2 24.575 -8.986 -0.935 1 68.55 ? C3' FMN 401 A 1 HETATM 23 O O3' FMN . . . B 2 25.924 -9.232 -0.668 1 52.69 ? O3' FMN 401 A 1 HETATM 24 C C4' FMN . . . B 2 23.73 -10.149 -0.408 1 71.21 ? C4' FMN 401 A 1 HETATM 25 O O4' FMN . . . B 2 22.39 -9.766 -0.338 1 71.74 ? O4' FMN 401 A 1 HETATM 26 C C5' FMN . . . B 2 24.232 -10.516 0.978 1 88.99 ? C5' FMN 401 A 1 HETATM 27 O O5' FMN . . . B 2 23.273 -11.294 1.602 1 82.78 ? O5' FMN 401 A 1 HETATM 28 P P FMN . . . B 2 23.362 -11.481 3.222 1 62.99 ? P FMN 401 A 1 HETATM 29 O O1P FMN . . . B 2 22.609 -10.357 3.872 1 66.33 ? O1P FMN 401 A 1 HETATM 30 O O2P FMN . . . B 2 24.8 -11.444 3.65 1 68.19 ? O2P FMN 401 A 1 HETATM 31 O O3P FMN . . . B 2 22.76 -12.804 3.602 1 61.63 ? O3P FMN 401 A 1 HETATM 32 H HN3 FMN . . . B 2 19.525 -11.892 -4.884 1 70.43 ? HN3 FMN 401 A 1 HETATM 33 H H6 FMN . . . B 2 24.99 -9.803 -9.183 1 73.31 ? H6 FMN 401 A 1 HETATM 34 H HM71 FMN . . . B 2 27.963 -8.163 -9.607 1 72.85 ? HM71 FMN 401 A 1 HETATM 35 H HM72 FMN . . . B 2 27.718 -9.891 -9.947 1 72.85 ? HM72 FMN 401 A 1 HETATM 36 H HM73 FMN . . . B 2 26.406 -8.727 -10.218 1 72.85 ? HM73 FMN 401 A 1 HETATM 37 H HM81 FMN . . . B 2 29.193 -8.517 -5.891 1 106.54 ? HM81 FMN 401 A 1 HETATM 38 H HM82 FMN . . . B 2 29.414 -9.116 -7.545 1 106.54 ? HM82 FMN 401 A 1 HETATM 39 H HM83 FMN . . . B 2 28.825 -7.466 -7.271 1 106.54 ? HM83 FMN 401 A 1 HETATM 40 H H9 FMN . . . B 2 27.16 -9.132 -4.803 1 70.95 ? H9 FMN 401 A 1 HETATM 41 H "H1'1" FMN . . . B 2 26.16 -9.689 -3.229 1 69.34 ? "H1'1" FMN 401 A 1 HETATM 42 H "H1'2" FMN . . . B 2 24.982 -10.868 -2.699 1 69.34 ? "H1'2" FMN 401 A 1 HETATM 43 H H2' FMN . . . B 2 23.321 -8.813 -2.653 1 74.42 ? H2' FMN 401 A 1 HETATM 44 H HO2' FMN . . . B 2 25.23 -7.632 -3.709 1 60.72 ? HO2' FMN 401 A 1 HETATM 45 H H3' FMN . . . B 2 24.276 -8.076 -0.429 1 82.27 ? H3' FMN 401 A 1 HETATM 46 H H4' FMN . . . B 2 23.814 -11.014 -1.05 1 85.47 ? H4' FMN 401 A 1 HETATM 47 H HO4' FMN . . . B 2 21.987 -10.168 0.415 1 86.11 ? HO4' FMN 401 A 1 HETATM 48 H "H5'1" FMN . . . B 2 24.41 -9.618 1.561 1 106.8 ? "H5'1" FMN 401 A 1 HETATM 49 H "H5'2" FMN . . . B 2 25.157 -11.077 0.897 1 106.8 ? "H5'2" FMN 401 A 1 # _model_server_stats.io_time_ms 89 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 354 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 49 #