data_8QFG # _model_server_result.job_id UPHGYUKkP7DtG9Yj2g5WMw _model_server_result.datetime_utc '2025-07-03 21:27:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8qfg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 8QFG # _exptl.entry_id 8QFG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8QFG _cell.length_a 52.511 _cell.length_b 141.425 _cell.length_c 104.732 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8QFG _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? -1 0 0 0 1 0 0 0 -1 52.51 0 -52.365 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 156 A ASP 156 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc2 A OD2 ASP 156 A ASP 156 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc3 A O ILE 157 A ILE 157 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc4 A OD2 ASP 200 A ASP 200 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc5 A OD1 ASP 200 A ASP 200 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc6 C O3G ATP . A ATP 402 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc7 C O2B ATP . A ATP 402 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc8 C O2A ATP . A ATP 402 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc9 C O2A ATP . A ATP 402 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc10 E MG MG . A MG 404 1_555 F O HOH . A HOH 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc11 E MG MG . A MG 404 1_555 F O HOH . A HOH 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 8QFG _atom_sites.fract_transf_matrix[1][1] 0.019044 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007071 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009548 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 401 1 FMN FMN . C 3 ATP A 1 402 2 ATP ATP . D 4 MG A 1 403 3 MG MG . E 4 MG A 1 404 4 MG MG . F 5 HOH A 1 501 95 HOH HOH . F 5 HOH A 2 502 61 HOH HOH . F 5 HOH A 3 503 85 HOH HOH . F 5 HOH A 4 504 57 HOH HOH . F 5 HOH A 5 505 100 HOH HOH . F 5 HOH A 6 506 87 HOH HOH . F 5 HOH A 7 507 2 HOH HOH . F 5 HOH A 8 508 62 HOH HOH . F 5 HOH A 9 509 97 HOH HOH . F 5 HOH A 10 510 3 HOH HOH . F 5 HOH A 11 511 7 HOH HOH . F 5 HOH A 12 512 65 HOH HOH . F 5 HOH A 13 513 104 HOH HOH . F 5 HOH A 14 514 16 HOH HOH . F 5 HOH A 15 515 38 HOH HOH . F 5 HOH A 16 516 37 HOH HOH . F 5 HOH A 17 517 63 HOH HOH . F 5 HOH A 18 518 76 HOH HOH . F 5 HOH A 19 519 42 HOH HOH . F 5 HOH A 20 520 52 HOH HOH . F 5 HOH A 21 521 24 HOH HOH . F 5 HOH A 22 522 49 HOH HOH . F 5 HOH A 23 523 53 HOH HOH . F 5 HOH A 24 524 11 HOH HOH . F 5 HOH A 25 525 84 HOH HOH . F 5 HOH A 26 526 10 HOH HOH . F 5 HOH A 27 527 5 HOH HOH . F 5 HOH A 28 528 64 HOH HOH . F 5 HOH A 29 529 34 HOH HOH . F 5 HOH A 30 530 6 HOH HOH . F 5 HOH A 31 531 77 HOH HOH . F 5 HOH A 32 532 13 HOH HOH . F 5 HOH A 33 533 31 HOH HOH . F 5 HOH A 34 534 55 HOH HOH . F 5 HOH A 35 535 21 HOH HOH . F 5 HOH A 36 536 1 HOH HOH . F 5 HOH A 37 537 48 HOH HOH . F 5 HOH A 38 538 80 HOH HOH . F 5 HOH A 39 539 32 HOH HOH . F 5 HOH A 40 540 29 HOH HOH . F 5 HOH A 41 541 82 HOH HOH . F 5 HOH A 42 542 56 HOH HOH . F 5 HOH A 43 543 26 HOH HOH . F 5 HOH A 44 544 22 HOH HOH . F 5 HOH A 45 545 14 HOH HOH . F 5 HOH A 46 546 8 HOH HOH . F 5 HOH A 47 547 12 HOH HOH . F 5 HOH A 48 548 36 HOH HOH . F 5 HOH A 49 549 44 HOH HOH . F 5 HOH A 50 550 19 HOH HOH . F 5 HOH A 51 551 47 HOH HOH . F 5 HOH A 52 552 46 HOH HOH . F 5 HOH A 53 553 33 HOH HOH . F 5 HOH A 54 554 101 HOH HOH . F 5 HOH A 55 555 15 HOH HOH . F 5 HOH A 56 556 41 HOH HOH . F 5 HOH A 57 557 20 HOH HOH . F 5 HOH A 58 558 73 HOH HOH . F 5 HOH A 59 559 9 HOH HOH . F 5 HOH A 60 560 4 HOH HOH . F 5 HOH A 61 561 43 HOH HOH . F 5 HOH A 62 562 23 HOH HOH . F 5 HOH A 63 563 67 HOH HOH . F 5 HOH A 64 564 66 HOH HOH . F 5 HOH A 65 565 28 HOH HOH . F 5 HOH A 66 566 27 HOH HOH . F 5 HOH A 67 567 54 HOH HOH . F 5 HOH A 68 568 18 HOH HOH . F 5 HOH A 69 569 50 HOH HOH . F 5 HOH A 70 570 75 HOH HOH . F 5 HOH A 71 571 78 HOH HOH . F 5 HOH A 72 572 71 HOH HOH . F 5 HOH A 73 573 88 HOH HOH . F 5 HOH A 74 574 86 HOH HOH . F 5 HOH A 75 575 68 HOH HOH . F 5 HOH A 76 576 70 HOH HOH . F 5 HOH A 77 577 92 HOH HOH . F 5 HOH A 78 578 81 HOH HOH . F 5 HOH A 79 579 35 HOH HOH . F 5 HOH A 80 580 107 HOH HOH . F 5 HOH A 81 581 51 HOH HOH . F 5 HOH A 82 582 91 HOH HOH . F 5 HOH A 83 583 98 HOH HOH . F 5 HOH A 84 584 17 HOH HOH . F 5 HOH A 85 585 30 HOH HOH . F 5 HOH A 86 586 96 HOH HOH . F 5 HOH A 87 587 103 HOH HOH . F 5 HOH A 88 588 93 HOH HOH . F 5 HOH A 89 589 60 HOH HOH . F 5 HOH A 90 590 39 HOH HOH . F 5 HOH A 91 591 58 HOH HOH . F 5 HOH A 92 592 90 HOH HOH . F 5 HOH A 93 593 79 HOH HOH . F 5 HOH A 94 594 40 HOH HOH . F 5 HOH A 95 595 102 HOH HOH . F 5 HOH A 96 596 74 HOH HOH . F 5 HOH A 97 597 69 HOH HOH . F 5 HOH A 98 598 25 HOH HOH . F 5 HOH A 99 599 72 HOH HOH . F 5 HOH A 100 600 105 HOH HOH . F 5 HOH A 101 601 45 HOH HOH . F 5 HOH A 102 602 59 HOH HOH . F 5 HOH A 103 603 89 HOH HOH . F 5 HOH A 104 604 83 HOH HOH . F 5 HOH A 105 605 94 HOH HOH . F 5 HOH A 106 606 106 HOH HOH . F 5 HOH A 107 607 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 3 33.676 35.75 -18.053 1 35.12 ? PG ATP 402 A 1 HETATM 2 O O1G ATP . . . C 3 33.944 36.166 -16.639 1 35.87 ? O1G ATP 402 A 1 HETATM 3 O O2G ATP . . . C 3 33.098 36.77 -18.941 1 33.2 ? O2G ATP 402 A 1 HETATM 4 O O3G ATP . . . C 3 32.816 34.505 -18.21 1 33.45 ? O3G ATP 402 A 1 HETATM 5 P PB ATP . . . C 3 35.79 34.119 -19.336 1 37.39 ? PB ATP 402 A 1 HETATM 6 O O1B ATP . . . C 3 37.283 34.254 -19.44 1 36.93 ? O1B ATP 402 A 1 HETATM 7 O O2B ATP . . . C 3 35.331 32.905 -18.532 1 34.34 ? O2B ATP 402 A 1 HETATM 8 O O3B ATP . . . C 3 35.069 35.374 -18.764 1 44.47 ? O3B ATP 402 A 1 HETATM 9 P PA ATP . . . C 3 33.989 33.233 -21.418 1 33.12 ? PA ATP 402 A 1 HETATM 10 O O1A ATP . . . C 3 33.235 34.094 -22.335 1 36.11 ? O1A ATP 402 A 1 HETATM 11 O O2A ATP . . . C 3 33.124 32.522 -20.385 1 32.46 ? O2A ATP 402 A 1 HETATM 12 O O3A ATP . . . C 3 35.162 33.947 -20.789 1 40.71 ? O3A ATP 402 A 1 HETATM 13 O O5' ATP . . . C 3 34.679 32.103 -22.297 1 34.17 ? O5' ATP 402 A 1 HETATM 14 C C5' ATP . . . C 3 35.29 30.937 -21.703 1 31.39 ? C5' ATP 402 A 1 HETATM 15 C C4' ATP . . . C 3 35.114 29.777 -22.673 1 31.34 ? C4' ATP 402 A 1 HETATM 16 O O4' ATP . . . C 3 33.717 29.734 -23.01 1 31.79 ? O4' ATP 402 A 1 HETATM 17 C C3' ATP . . . C 3 35.748 30.172 -23.995 1 34.18 ? C3' ATP 402 A 1 HETATM 18 O O3' ATP . . . C 3 37.097 29.707 -24.073 1 35.14 ? O3' ATP 402 A 1 HETATM 19 C C2' ATP . . . C 3 34.961 29.336 -24.996 1 33.21 ? C2' ATP 402 A 1 HETATM 20 O O2' ATP . . . C 3 35.322 27.971 -24.874 1 38.54 ? O2' ATP 402 A 1 HETATM 21 C C1' ATP . . . C 3 33.569 29.338 -24.384 1 33.11 ? C1' ATP 402 A 1 HETATM 22 N N9 ATP . . . C 3 32.728 30.316 -25.063 1 33.01 ? N9 ATP 402 A 1 HETATM 23 C C8 ATP . . . C 3 32.828 31.682 -24.983 1 33.4 ? C8 ATP 402 A 1 HETATM 24 N N7 ATP . . . C 3 31.897 32.33 -25.648 1 32.96 ? N7 ATP 402 A 1 HETATM 25 C C5 ATP . . . C 3 31.105 31.317 -26.165 1 33.64 ? C5 ATP 402 A 1 HETATM 26 C C6 ATP . . . C 3 29.957 31.336 -26.978 1 32.46 ? C6 ATP 402 A 1 HETATM 27 N N6 ATP . . . C 3 29.363 32.464 -27.371 1 37.05 ? N6 ATP 402 A 1 HETATM 28 N N1 ATP . . . C 3 29.39 30.144 -27.316 1 33.78 ? N1 ATP 402 A 1 HETATM 29 C C2 ATP . . . C 3 30.014 29.022 -26.944 1 32.41 ? C2 ATP 402 A 1 HETATM 30 N N3 ATP . . . C 3 31.111 28.889 -26.191 1 33.36 ? N3 ATP 402 A 1 HETATM 31 C C4 ATP . . . C 3 31.604 30.074 -25.817 1 31.15 ? C4 ATP 402 A 1 HETATM 32 H "H5'1" ATP . . . C 3 34.857 30.73 -20.86 1 37.68 ? "H5'1" ATP 402 A 1 HETATM 33 H "H5'2" ATP . . . C 3 36.234 31.099 -21.55 1 37.68 ? "H5'2" ATP 402 A 1 HETATM 34 H H4' ATP . . . C 3 35.412 28.923 -22.325 1 37.63 ? H4' ATP 402 A 1 HETATM 35 H H3' ATP . . . C 3 35.657 31.13 -24.113 1 41.03 ? H3' ATP 402 A 1 HETATM 36 H H2' ATP . . . C 3 35.036 29.734 -25.878 1 39.87 ? H2' ATP 402 A 1 HETATM 37 H HO2' ATP . . . C 3 35.097 27.54 -25.578 1 46.26 ? HO2' ATP 402 A 1 HETATM 38 H H1' ATP . . . C 3 33.17 28.453 -24.392 1 39.75 ? H1' ATP 402 A 1 HETATM 39 H H8 ATP . . . C 3 33.496 32.112 -24.5 1 40.1 ? H8 ATP 402 A 1 HETATM 40 H HN61 ATP . . . C 3 28.622 32.416 -27.8 1 44.47 ? HN61 ATP 402 A 1 HETATM 41 H HN62 ATP . . . C 3 29.732 33.225 -27.22 1 44.47 ? HN62 ATP 402 A 1 HETATM 42 H H2 ATP . . . C 3 29.635 28.23 -27.25 1 38.91 ? H2 ATP 402 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 42 #